RNA–Protein interactions for RNA: ENST00000375271.4

PTCH1-202, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,058 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-202ENST00000375271 BTNL9Q6UXG8 535 aa16.59■□□□□ 0.25
PTCH1-202ENST00000375271 CAGE1Q8TC20 777 aa16.59■□□□□ 0.25
PTCH1-202ENST00000375271 CHD7Q9P2D1 2997 aa16.59■□□□□ 0.25
PTCH1-202ENST00000375271 LCTP09848 1927 aa16.58■□□□□ 0.25
PTCH1-202ENST00000375271 SCN5AQ14524 2016 aa16.58■□□□□ 0.25
PTCH1-202ENST00000375271 RBM47A0AV96 593 aaKnown RBP16.58■□□□□ 0.24
PTCH1-202ENST00000375271 RPS6P62753 249 aaKnown RBP16.58■□□□□ 0.24
PTCH1-202ENST00000375271 USH1GQ495M9 461 aa16.58■□□□□ 0.24
PTCH1-202ENST00000375271 PI4K2BQ8TCG2 481 aa16.58■□□□□ 0.24
PTCH1-202ENST00000375271 AFAP1L1Q8TED9 768 aa16.58■□□□□ 0.24
PTCH1-202ENST00000375271 TMEM47Q9BQJ4 181 aa16.58■□□□□ 0.24
PTCH1-202ENST00000375271 INCENPQ9NQS7 918 aa16.58■□□□□ 0.24
PTCH1-202ENST00000375271 ANAPC4Q9UJX5 808 aa16.58■□□□□ 0.24
PTCH1-202ENST00000375271 NCOR1O75376 2440 aa16.58■□□□□ 0.24
PTCH1-202ENST00000375271 WDR19Q8NEZ3 1342 aa16.57■□□□□ 0.24
PTCH1-202ENST00000375271 PARNO95453 639 aaKnown RBP16.57■□□□□ 0.24
PTCH1-202ENST00000375271 TAP1Q03518 808 aa16.57■□□□□ 0.24
PTCH1-202ENST00000375271 EVI5LQ96CN4 794 aa16.57■□□□□ 0.24
PTCH1-202ENST00000375271 HELLSQ9NRZ9 838 aa16.57■□□□□ 0.24
PTCH1-202ENST00000375271 XIRP2A4UGR9 3374 aa16.57■□□□□ 0.24
PTCH1-202ENST00000375271 A6NJR5 290 aa16.56■□□□□ 0.24
PTCH1-202ENST00000375271 DHX16O60231 1041 aaKnown RBP16.56■□□□□ 0.24
PTCH1-202ENST00000375271 GH1P01241 217 aa16.56■□□□□ 0.24
PTCH1-202ENST00000375271 PDHBP11177 359 aa16.56■□□□□ 0.24
PTCH1-202ENST00000375271 POU3F3P20264 500 aaPredicted RBP16.56■□□□□ 0.24
PTCH1-202ENST00000375271 CASTP20810 708 aaKnown RBP16.56■□□□□ 0.24
PTCH1-202ENST00000375271 CHST3Q7LGC8 479 aa16.56■□□□□ 0.24
PTCH1-202ENST00000375271 PPP1R13LQ8WUF5 828 aa16.56■□□□□ 0.24
PTCH1-202ENST00000375271 COPS5Q92905 334 aa16.56■□□□□ 0.24
PTCH1-202ENST00000375271 RNF41Q9H4P4 317 aaPredicted RBP16.56■□□□□ 0.24
PTCH1-202ENST00000375271 SCN10AQ9Y5Y9 1956 aa16.56■□□□□ 0.24
PTCH1-202ENST00000375271 SELPP16109 830 aa16.55■□□□□ 0.24
PTCH1-202ENST00000375271 GRB10Q13322 594 aa16.55■□□□□ 0.24
PTCH1-202ENST00000375271 TMEM31Q5JXX7 168 aa16.55■□□□□ 0.24
PTCH1-202ENST00000375271 GPATCH4Q5T3I0 446 aaKnown RBP16.55■□□□□ 0.24
PTCH1-202ENST00000375271 VPS53Q5VIR6 699 aa16.55■□□□□ 0.24
PTCH1-202ENST00000375271 MFSD6Q6ZSS7 791 aa16.55■□□□□ 0.24
PTCH1-202ENST00000375271 LRRC8DQ7L1W4 858 aa16.55■□□□□ 0.24
PTCH1-202ENST00000375271 C7orf31Q8N865 590 aa16.55■□□□□ 0.24
PTCH1-202ENST00000375271 CLEC4DQ8WXI8 215 aa16.55■□□□□ 0.24
PTCH1-202ENST00000375271 KATNAL1Q9BW62 490 aa16.55■□□□□ 0.24
PTCH1-202ENST00000375271 TCP11L1Q9NUJ3 509 aa16.55■□□□□ 0.24
PTCH1-202ENST00000375271 PRRC2BQ5JSZ5 2229 aaKnown RBP16.55■□□□□ 0.24
PTCH1-202ENST00000375271 EFCAB14O75071 495 aa16.54■□□□□ 0.24
PTCH1-202ENST00000375271 PCP11498 1178 aaKnown RBP16.54■□□□□ 0.24
PTCH1-202ENST00000375271 MFAP1P55081 439 aaKnown RBP16.54■□□□□ 0.24
PTCH1-202ENST00000375271 HAND2P61296 217 aa16.54■□□□□ 0.24
PTCH1-202ENST00000375271 ZNF543Q08ER8 600 aa16.54■□□□□ 0.24
PTCH1-202ENST00000375271 ALX1Q15699 326 aa16.54■□□□□ 0.24
PTCH1-202ENST00000375271 MCMDC2Q4G0Z9 681 aa16.54■□□□□ 0.24
PTCH1-202ENST00000375271 KRT40Q6A162 431 aa16.54■□□□□ 0.24
PTCH1-202ENST00000375271 CNKSR3Q6P9H4 555 aa16.54■□□□□ 0.24
PTCH1-202ENST00000375271 SEPT14Q6ZU15 432 aa16.54■□□□□ 0.24
PTCH1-202ENST00000375271 OTUD7AQ8TE49 926 aaPredicted RBP16.54■□□□□ 0.24
PTCH1-202ENST00000375271 NSUN6Q8TEA1 469 aaKnown RBP16.54■□□□□ 0.24
PTCH1-202ENST00000375271 AFG1LQ8WV93 481 aa16.54■□□□□ 0.24
PTCH1-202ENST00000375271 TTC14Q96N46 770 aa16.54■□□□□ 0.24
PTCH1-202ENST00000375271 MTUS1Q9ULD2 1270 aa16.54■□□□□ 0.24
PTCH1-202ENST00000375271 EPOPA6NHQ4 379 aa16.53■□□□□ 0.24
PTCH1-202ENST00000375271 MMP3P08254 477 aa16.53■□□□□ 0.24
PTCH1-202ENST00000375271 EDNRBP24530 442 aa16.53■□□□□ 0.24
PTCH1-202ENST00000375271 NOVP48745 357 aa16.53■□□□□ 0.24
PTCH1-202ENST00000375271 WDR5P61964 334 aaKnown RBP16.53■□□□□ 0.24
PTCH1-202ENST00000375271 STXBP2Q15833 593 aa16.53■□□□□ 0.24
PTCH1-202ENST00000375271 DGKDQ16760 1214 aa16.53■□□□□ 0.24
PTCH1-202ENST00000375271 ANKRD45Q5TZF3 282 aa16.53■□□□□ 0.24
PTCH1-202ENST00000375271 MCF2L2Q86YR7 1114 aa16.53■□□□□ 0.24
PTCH1-202ENST00000375271 GDPD5Q8WTR4 605 aa16.53■□□□□ 0.24
PTCH1-202ENST00000375271 ESR2Q92731 530 aa16.53■□□□□ 0.24
PTCH1-202ENST00000375271 BDP1A6H8Y1 2624 aa16.53■□□□□ 0.24
PTCH1-202ENST00000375271 ABCB11O95342 1321 aa16.52■□□□□ 0.24
PTCH1-202ENST00000375271 TRIM6-TRIM34B2RNG4 842 aa16.52■□□□□ 0.24
PTCH1-202ENST00000375271 FGAP02671 866 aa16.52■□□□□ 0.24
PTCH1-202ENST00000375271 IKBKEQ14164 716 aa16.52■□□□□ 0.24
PTCH1-202ENST00000375271 CCDC178Q5BJE1 867 aa16.52■□□□□ 0.24
PTCH1-202ENST00000375271 ARHGEF16Q5VV41 709 aa16.52■□□□□ 0.24
PTCH1-202ENST00000375271 IQCA1Q86XH1 822 aa16.52■□□□□ 0.24
PTCH1-202ENST00000375271 DHX37Q8IY37 1157 aaKnown RBP16.52■□□□□ 0.24
PTCH1-202ENST00000375271 VWCEQ96DN2 955 aa16.52■□□□□ 0.24
PTCH1-202ENST00000375271 TGS1Q96RS0 853 aaKnown RBP16.52■□□□□ 0.24
PTCH1-202ENST00000375271 ALG1Q9BT22 464 aa16.52■□□□□ 0.24
PTCH1-202ENST00000375271 KAT14Q9H8E8 782 aa16.52■□□□□ 0.24
PTCH1-202ENST00000375271 LMCD1Q9NZU5 365 aa16.52■□□□□ 0.24
PTCH1-202ENST00000375271 COL4A4P53420 1690 aaPredicted RBP16.52■□□□□ 0.23
PTCH1-202ENST00000375271 TRANK1O15050 2925 aa16.52■□□□□ 0.23
PTCH1-202ENST00000375271 ABHD14A-ACY1A0A1B0GW23 586 aa16.51■□□□□ 0.23
PTCH1-202ENST00000375271 FOXP2O15409 715 aa16.51■□□□□ 0.23
PTCH1-202ENST00000375271 FGRP09769 529 aa16.51■□□□□ 0.23
PTCH1-202ENST00000375271 GOLGA8HP0CJ92 632 aa16.51■□□□□ 0.23
PTCH1-202ENST00000375271 CDC37Q16543 378 aaPredicted RBP16.51■□□□□ 0.23
PTCH1-202ENST00000375271 LY6KQ17RY6 165 aa16.51■□□□□ 0.23
PTCH1-202ENST00000375271 GDF6Q6KF10 455 aaPredicted RBP16.51■□□□□ 0.23
PTCH1-202ENST00000375271 RGS22Q8NE09 1264 aa16.51■□□□□ 0.23
PTCH1-202ENST00000375271 IWS1Q96ST2 819 aa16.51■□□□□ 0.23
PTCH1-202ENST00000375271 RMDN3Q96TC7 470 aa16.51■□□□□ 0.23
PTCH1-202ENST00000375271 RAD9AQ99638 391 aa16.51■□□□□ 0.23
PTCH1-202ENST00000375271 MAF1Q9H063 256 aa16.51■□□□□ 0.23
PTCH1-202ENST00000375271 MRVI1Q9Y6F6 885 aa16.51■□□□□ 0.23
PTCH1-202ENST00000375271 REV3LO60673 3130 aa16.51■□□□□ 0.23
PTCH1-202ENST00000375271 ZMYM6O95789 1325 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms