RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 ZNF445P59923 1031 aa21.1■□□□□ 0.97
CLN3-206ENST00000360019 RPS6P62753 249 aaKnown RBP21.1■□□□□ 0.97
CLN3-206ENST00000360019 PABPC4Q13310 644 aaKnown RBP eCLIP21.1■□□□□ 0.973e-6■■■■□ 26.6
CLN3-206ENST00000360019 MOXD1Q6UVY6 613 aa21.1■□□□□ 0.97
CLN3-206ENST00000360019 SLC30A10Q6XR72 485 aa21.1■□□□□ 0.97
CLN3-206ENST00000360019 SYTL5Q8TDW5 730 aaPredicted RBP21.1■□□□□ 0.97
CLN3-206ENST00000360019 SYMPKQ92797 1274 aaKnown RBP21.1■□□□□ 0.97
CLN3-206ENST00000360019 EPSTI1Q96J88 318 aa21.1■□□□□ 0.97
CLN3-206ENST00000360019 NAP1L4Q99733 375 aaKnown RBP21.1■□□□□ 0.97
CLN3-206ENST00000360019 MAP3K20Q9NYL2 800 aaKnown RBP21.1■□□□□ 0.97
CLN3-206ENST00000360019 KINO60870 393 aaKnown RBP21.09■□□□□ 0.97
CLN3-206ENST00000360019 ZNF202O95125 648 aa21.09■□□□□ 0.97
CLN3-206ENST00000360019 CYP3A4P08684 503 aa21.09■□□□□ 0.97
CLN3-206ENST00000360019 ZBTB48P10074 688 aaPredicted RBP21.09■□□□□ 0.97
CLN3-206ENST00000360019 CETPP11597 493 aa21.09■□□□□ 0.97
CLN3-206ENST00000360019 CALCRLQ16602 461 aa21.09■□□□□ 0.97
CLN3-206ENST00000360019 BRI3BPQ8WY22 251 aa21.09■□□□□ 0.97
CLN3-206ENST00000360019 FAM13BQ9NYF5 915 aa21.09■□□□□ 0.97
CLN3-206ENST00000360019 KCNH3Q9ULD8 1083 aa21.09■□□□□ 0.97
CLN3-206ENST00000360019 CCL15-CCL14A0A0B4J2E2 113 aa21.08■□□□□ 0.97
CLN3-206ENST00000360019 CNMDO75829 334 aa21.08■□□□□ 0.97
CLN3-206ENST00000360019 OSBPP22059 807 aa21.08■□□□□ 0.97
CLN3-206ENST00000360019 CIITAP33076 1130 aa21.08■□□□□ 0.97
CLN3-206ENST00000360019 LONP1P36776 959 aaKnown RBP21.08■□□□□ 0.97
CLN3-206ENST00000360019 SYKP43405 635 aa21.08■□□□□ 0.97
CLN3-206ENST00000360019 GSE1Q14687 1217 aa21.08■□□□□ 0.97
CLN3-206ENST00000360019 CCL15Q16663 113 aa21.08■□□□□ 0.97
CLN3-206ENST00000360019 TKFCQ3LXA3 575 aa21.08■□□□□ 0.97
CLN3-206ENST00000360019 RNF207Q6ZRF8 634 aa21.08■□□□□ 0.97
CLN3-206ENST00000360019 SAMD3Q8N6K7 520 aa21.08■□□□□ 0.97
CLN3-206ENST00000360019 FAM86B1E9PN63 330 aa21.08■□□□□ 0.96
CLN3-206ENST00000360019 FAM86B2P0C5J1 330 aa21.08■□□□□ 0.96
CLN3-206ENST00000360019 UBXN2AP68543 259 aa21.08■□□□□ 0.96
CLN3-206ENST00000360019 NSMFQ6X4W1 530 aa21.08■□□□□ 0.96
CLN3-206ENST00000360019 SAPCD2Q86UD0 394 aa21.08■□□□□ 0.96
CLN3-206ENST00000360019 HAS1Q92839 578 aa21.08■□□□□ 0.96
CLN3-206ENST00000360019 LENG9Q96B70 501 aa21.08■□□□□ 0.96
CLN3-206ENST00000360019 RPTORQ8N122 1335 aa21.08■□□□□ 0.96
CLN3-206ENST00000360019 BTBD19C9JJ37 291 aa21.07■□□□□ 0.96
CLN3-206ENST00000360019 PAGR1Q9BTK6 254 aa21.07■□□□□ 0.96
CLN3-206ENST00000360019 SPATC1LQ9H0A9 340 aa21.07■□□□□ 0.96
CLN3-206ENST00000360019 TNMDQ9H2S6 317 aa21.07■□□□□ 0.96
CLN3-206ENST00000360019 ACAD9Q9H845 621 aa21.07■□□□□ 0.96
CLN3-206ENST00000360019 A0A087X0B3 334 aa21.06■□□□□ 0.96
CLN3-206ENST00000360019 TXKP42681 527 aa21.06■□□□□ 0.96
CLN3-206ENST00000360019 BAATQ14032 418 aaPredicted RBP21.06■□□□□ 0.96
CLN3-206ENST00000360019 Q4G0T1 1027 aa21.06■□□□□ 0.96
CLN3-206ENST00000360019 PRR16Q569H4 304 aa21.06■□□□□ 0.96
CLN3-206ENST00000360019 RBM43Q6ZSC3 357 aaKnown RBP21.06■□□□□ 0.96
CLN3-206ENST00000360019 RIOX2Q8IUF8 465 aa21.06■□□□□ 0.96
CLN3-206ENST00000360019 EHMT1Q9H9B1 1298 aa21.06■□□□□ 0.96
CLN3-206ENST00000360019 TXNRD2Q9NNW7 524 aa21.06■□□□□ 0.96
CLN3-206ENST00000360019 KCNMB3Q9NPA1 279 aa21.06■□□□□ 0.96
CLN3-206ENST00000360019 RBPJLQ9UBG7 517 aa21.06■□□□□ 0.96
CLN3-206ENST00000360019 CYP2C8P10632 490 aa21.06■□□□□ 0.96
CLN3-206ENST00000360019 CDC25AP30304 524 aa21.06■□□□□ 0.96
CLN3-206ENST00000360019 CYP2W1Q8TAV3 490 aa21.06■□□□□ 0.96
CLN3-206ENST00000360019 GJA10Q969M2 543 aa21.06■□□□□ 0.96
CLN3-206ENST00000360019 PURBQ96QR8 312 aaKnown RBP21.06■□□□□ 0.96
CLN3-206ENST00000360019 TAAR1Q96RJ0 339 aa21.06■□□□□ 0.96
CLN3-206ENST00000360019 A1CFQ9NQ94 594 aaKnown RBP21.06■□□□□ 0.96
CLN3-206ENST00000360019 FRMPD4Q14CM0 1322 aa21.06■□□□□ 0.96
CLN3-206ENST00000360019 IGLV3-22A0A075B6J6 115 aa21.05■□□□□ 0.96
CLN3-206ENST00000360019 PP2D1A8MPX8 630 aa21.05■□□□□ 0.96
CLN3-206ENST00000360019 PDHXO00330 501 aa21.05■□□□□ 0.96
CLN3-206ENST00000360019 POLR2DO15514 142 aaKnown RBP21.05■□□□□ 0.96
CLN3-206ENST00000360019 LETM1O95202 739 aaPredicted RBP21.05■□□□□ 0.96
CLN3-206ENST00000360019 TECP42680 631 aa21.05■□□□□ 0.96
CLN3-206ENST00000360019 GAS2L3Q86XJ1 694 aa21.05■□□□□ 0.96
CLN3-206ENST00000360019 RASAL3Q86YV0 1011 aa21.05■□□□□ 0.96
CLN3-206ENST00000360019 PDILTQ8N807 584 aa21.05■□□□□ 0.96
CLN3-206ENST00000360019 CHST13Q8NET6 341 aa21.05■□□□□ 0.96
CLN3-206ENST00000360019 TIGD1Q96MW7 591 aa21.05■□□□□ 0.96
CLN3-206ENST00000360019 PANK2Q9BZ23 570 aa21.05■□□□□ 0.96
CLN3-206ENST00000360019 PNMA3Q9UL41 463 aa21.05■□□□□ 0.96
CLN3-206ENST00000360019 SLC45A1Q9Y2W3 748 aa21.05■□□□□ 0.96
CLN3-206ENST00000360019 FXR2P51116 673 aaKnown RBP eCLIP21.04■□□□□ 0.96
CLN3-206ENST00000360019 ZNF157P51786 506 aaPredicted RBP21.04■□□□□ 0.96
CLN3-206ENST00000360019 LONRF3Q496Y0 759 aa21.04■□□□□ 0.96
CLN3-206ENST00000360019 LRSAM1Q6UWE0 723 aa21.04■□□□□ 0.96
CLN3-206ENST00000360019 ANKRD23Q86SG2 305 aa21.04■□□□□ 0.96
CLN3-206ENST00000360019 CKAP2LQ8IYA6 745 aa21.04■□□□□ 0.96
CLN3-206ENST00000360019 IGSF22Q8N9C0 903 aa21.04■□□□□ 0.96
CLN3-206ENST00000360019 SMC1BQ8NDV3 1235 aa21.04■□□□□ 0.96
CLN3-206ENST00000360019 ETNPPLQ8TBG4 499 aa21.04■□□□□ 0.96
CLN3-206ENST00000360019 MOV10L1Q9BXT6 1211 aaKnown RBP21.04■□□□□ 0.96
CLN3-206ENST00000360019 CYP39A1Q9NYL5 469 aa21.04■□□□□ 0.96
CLN3-206ENST00000360019 RABGAP1Q9Y3P9 1069 aa21.04■□□□□ 0.96
CLN3-206ENST00000360019 ZNF76P36508 570 aa21.04■□□□□ 0.96
CLN3-206ENST00000360019 FAM43AQ8N2R8 423 aa21.04■□□□□ 0.96
CLN3-206ENST00000360019 IL31RAQ8NI17 732 aa21.04■□□□□ 0.96
CLN3-206ENST00000360019 AK8Q96MA6 479 aa21.04■□□□□ 0.96
CLN3-206ENST00000360019 UIMC1Q96RL1 719 aa21.04■□□□□ 0.96
CLN3-206ENST00000360019 PTPN18Q99952 460 aa21.04■□□□□ 0.96
CLN3-206ENST00000360019 Q3C1V9 767 aa21.03■□□□□ 0.96
CLN3-206ENST00000360019 KRBA2Q6ZNG9 492 aa21.03■□□□□ 0.96
CLN3-206ENST00000360019 ZFP91Q96JP5 570 aaPredicted RBP21.03■□□□□ 0.96
CLN3-206ENST00000360019 RMDN3Q96TC7 470 aa21.03■□□□□ 0.96
CLN3-206ENST00000360019 SDF4Q9BRK5 362 aa21.03■□□□□ 0.96
CLN3-206ENST00000360019 MAF1Q9H063 256 aa21.03■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms