RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 RNF169Q8NCN4 708 aa3.59□□□□□ -1.83
CSMD3-202ENST00000339701 SCG3Q8WXD2 468 aaKnown RBP3.59□□□□□ -1.83
CSMD3-202ENST00000339701 ABTB1Q969K4 478 aaPredicted RBP3.59□□□□□ -1.83
CSMD3-202ENST00000339701 KATNAL1Q9BW62 490 aa3.59□□□□□ -1.83
CSMD3-202ENST00000339701 TACC3Q9Y6A5 838 aa3.59□□□□□ -1.83
CSMD3-202ENST00000339701 A0A1W2PP64 1363 aa3.59□□□□□ -1.83
CSMD3-202ENST00000339701 LOC102724428A0A0B4J2F2 783 aa3.59□□□□□ -1.83
CSMD3-202ENST00000339701 CCDC194A0A1B0GVG4 234 aa3.59□□□□□ -1.83
CSMD3-202ENST00000339701 PYGBP11216 843 aa3.59□□□□□ -1.83
CSMD3-202ENST00000339701 GTF2A2P52657 109 aa3.59□□□□□ -1.83
CSMD3-202ENST00000339701 SIK1P57059 783 aa3.59□□□□□ -1.83
CSMD3-202ENST00000339701 ZBTB16Q05516 673 aa3.59□□□□□ -1.83
CSMD3-202ENST00000339701 DHX9Q08211 1270 aaKnown RBP3.59□□□□□ -1.83
CSMD3-202ENST00000339701 DRP2Q13474 957 aa3.59□□□□□ -1.83
CSMD3-202ENST00000339701 TTC31Q49AM3 519 aaPredicted RBP3.59□□□□□ -1.83
CSMD3-202ENST00000339701 SEPT8Q92599 483 aa3.59□□□□□ -1.83
CSMD3-202ENST00000339701 CSRNP1Q96S65 589 aa3.59□□□□□ -1.83
CSMD3-202ENST00000339701 CYTH2Q99418 400 aa3.59□□□□□ -1.83
CSMD3-202ENST00000339701 POP1Q99575 1024 aaKnown RBP3.59□□□□□ -1.83
CSMD3-202ENST00000339701 SENP1Q9P0U3 644 aa3.59□□□□□ -1.83
CSMD3-202ENST00000339701 IPO11Q9UI26 975 aaKnown RBP3.59□□□□□ -1.83
CSMD3-202ENST00000339701 DOLKQ9UPQ8 538 aa3.59□□□□□ -1.83
CSMD3-202ENST00000339701 KDM3BQ7LBC6 1761 aa3.59□□□□□ -1.83
CSMD3-202ENST00000339701 IDEP14735 1019 aa3.59□□□□□ -1.83
CSMD3-202ENST00000339701 PLCD1P51178 756 aa3.59□□□□□ -1.83
CSMD3-202ENST00000339701 SMTNP53814 917 aa3.59□□□□□ -1.83
CSMD3-202ENST00000339701 CCDC89Q8N998 374 aa3.59□□□□□ -1.83
CSMD3-202ENST00000339701 CHURC1Q8WUH1 139 aa3.59□□□□□ -1.83
CSMD3-202ENST00000339701 ATRIPQ8WXE1 791 aa3.59□□□□□ -1.83
CSMD3-202ENST00000339701 CCDC138Q96M89 665 aa3.59□□□□□ -1.83
CSMD3-202ENST00000339701 YIPF3Q9GZM5 350 aa3.59□□□□□ -1.83
CSMD3-202ENST00000339701 MIS18AQ9NYP9 233 aa3.59□□□□□ -1.83
CSMD3-202ENST00000339701 ZKSCAN5Q9Y2L8 839 aa3.59□□□□□ -1.83
CSMD3-202ENST00000339701 TIAM2Q8IVF5 1701 aa3.59□□□□□ -1.83
CSMD3-202ENST00000339701 ARAP2Q8WZ64 1704 aa3.59□□□□□ -1.83
CSMD3-202ENST00000339701 ARHGAP10A1A4S6 786 aa3.59□□□□□ -1.84
CSMD3-202ENST00000339701 GOLGA8AA7E2F4 631 aa3.59□□□□□ -1.84
CSMD3-202ENST00000339701 GOLGA8BA8MQT2 603 aa3.59□□□□□ -1.84
CSMD3-202ENST00000339701 XPAP23025 273 aaPredicted RBP3.59□□□□□ -1.84
CSMD3-202ENST00000339701 ZC3H14Q6PJT7 736 aaKnown RBP3.59□□□□□ -1.84
CSMD3-202ENST00000339701 RUFY3Q7L099 469 aa3.59□□□□□ -1.84
CSMD3-202ENST00000339701 ADAT2Q7Z6V5 191 aaKnown RBP3.59□□□□□ -1.84
CSMD3-202ENST00000339701 CPLX4Q7Z7G2 160 aa3.59□□□□□ -1.84
CSMD3-202ENST00000339701 TMTC1Q8IUR5 882 aa3.59□□□□□ -1.84
CSMD3-202ENST00000339701 ADPGKQ9BRR6 497 aa3.59□□□□□ -1.84
CSMD3-202ENST00000339701 NHEJ1Q9H9Q4 299 aaPredicted RBP3.59□□□□□ -1.84
CSMD3-202ENST00000339701 BAG5Q9UL15 447 aa3.59□□□□□ -1.84
CSMD3-202ENST00000339701 EDARQ9UNE0 448 aa3.59□□□□□ -1.84
CSMD3-202ENST00000339701 MAP3K19Q56UN5 1328 aa3.59□□□□□ -1.84
CSMD3-202ENST00000339701 KRT14P02533 472 aa3.59□□□□□ -1.84
CSMD3-202ENST00000339701 MMEP08473 750 aa3.59□□□□□ -1.84
CSMD3-202ENST00000339701 PRR29P0C7W0 189 aa3.59□□□□□ -1.84
CSMD3-202ENST00000339701 ANXA13P27216 316 aa3.59□□□□□ -1.84
CSMD3-202ENST00000339701 BLVRAP53004 296 aa3.59□□□□□ -1.84
CSMD3-202ENST00000339701 YARSP54577 528 aaKnown RBP3.59□□□□□ -1.84
CSMD3-202ENST00000339701 RAB15P59190 212 aa3.59□□□□□ -1.84
CSMD3-202ENST00000339701 GUCY1B3Q02153 619 aa3.59□□□□□ -1.84
CSMD3-202ENST00000339701 PAK2Q13177 524 aa3.59□□□□□ -1.84
CSMD3-202ENST00000339701 THOC7Q6I9Y2 204 aaKnown RBP3.59□□□□□ -1.84
CSMD3-202ENST00000339701 CC2D1AQ6P1N0 951 aaPredicted RBP3.59□□□□□ -1.84
CSMD3-202ENST00000339701 WDR75Q8IWA0 830 aaKnown RBP3.59□□□□□ -1.84
CSMD3-202ENST00000339701 NECAB1Q8N987 351 aa3.59□□□□□ -1.84
CSMD3-202ENST00000339701 N4BP2L2Q92802 583 aaPredicted RBP3.59□□□□□ -1.84
CSMD3-202ENST00000339701 STAMBPL1Q96FJ0 436 aa3.59□□□□□ -1.84
CSMD3-202ENST00000339701 OLFM1Q99784 485 aa3.59□□□□□ -1.84
CSMD3-202ENST00000339701 RIOK1Q9BRS2 568 aaKnown RBP3.59□□□□□ -1.84
CSMD3-202ENST00000339701 TBC1D2Q9BYX2 928 aa3.59□□□□□ -1.84
CSMD3-202ENST00000339701 ARFGEF2Q9Y6D5 1785 aa3.59□□□□□ -1.84
CSMD3-202ENST00000339701 KDM4AO75164 1064 aa3.59□□□□□ -1.84
CSMD3-202ENST00000339701 SUPT20HL2P0C7V6 817 aa3.59□□□□□ -1.84
CSMD3-202ENST00000339701 KRT3P12035 628 aa3.59□□□□□ -1.84
CSMD3-202ENST00000339701 SKIP12755 728 aa3.59□□□□□ -1.84
CSMD3-202ENST00000339701 NNMTP40261 264 aa3.59□□□□□ -1.84
CSMD3-202ENST00000339701 ZNF165P49910 485 aa3.59□□□□□ -1.84
CSMD3-202ENST00000339701 SLFN5Q08AF3 891 aa3.59□□□□□ -1.84
CSMD3-202ENST00000339701 EZH2Q15910 746 aaKnown RBP3.59□□□□□ -1.84
CSMD3-202ENST00000339701 DENND2CQ68D51 928 aa3.59□□□□□ -1.84
CSMD3-202ENST00000339701 TERB1Q8NA31 727 aa3.59□□□□□ -1.84
CSMD3-202ENST00000339701 TRIM58Q8NG06 486 aa3.59□□□□□ -1.84
CSMD3-202ENST00000339701 TRIM62Q9BVG3 475 aa3.59□□□□□ -1.84
CSMD3-202ENST00000339701 TRIM45Q9H8W5 580 aaPredicted RBP3.59□□□□□ -1.84
CSMD3-202ENST00000339701 FARP1Q9Y4F1 1045 aaPredicted RBP3.59□□□□□ -1.84
CSMD3-202ENST00000339701 MYO10Q9HD67 2058 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 TNKSO95271 1327 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 I3L4J1 428 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 ATP2B3Q16720 1220 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 CHADLQ6NUI6 762 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 INTS8Q75QN2 995 aaKnown RBP3.58□□□□□ -1.84
CSMD3-202ENST00000339701 VPS52Q8N1B4 723 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 YME1L1Q96TA2 773 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 EPS8L2Q9H6S3 715 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 TMEM265A0A087WTH1 108 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 HOXC9P31274 260 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 IARSP41252 1262 aaKnown RBP3.58□□□□□ -1.84
CSMD3-202ENST00000339701 EIF4A2Q14240 407 aaKnown RBP3.58□□□□□ -1.84
CSMD3-202ENST00000339701 AOC3Q16853 763 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 TXNRD1Q16881 649 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 ANKRD20A3Q5VUR7 823 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 ARHGEF16Q5VV41 709 aa3.58□□□□□ -1.84
CSMD3-202ENST00000339701 PRPF40BQ6NWY9 871 aaKnown RBP3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms