RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 LRRC8CQ8TDW0 803 aa13.75□□□□□ -0.21
SDC3-201ENST00000336798 NXF1Q9UBU9 619 aaKnown RBP13.75□□□□□ -0.21
SDC3-201ENST00000336798 PRKAG2Q9UGJ0 569 aa13.75□□□□□ -0.21
SDC3-201ENST00000336798 GUCY2DQ02846 1103 aa13.74□□□□□ -0.21
SDC3-201ENST00000336798 TRIP13Q15645 432 aaPredicted RBP13.74□□□□□ -0.21
SDC3-201ENST00000336798 SCARA5Q6ZMJ2 495 aa13.74□□□□□ -0.21
SDC3-201ENST00000336798 DNAAF3Q8N9W5 541 aa13.74□□□□□ -0.21
SDC3-201ENST00000336798 ANKRD36BP1Q96IX9 119 aa13.74□□□□□ -0.21
SDC3-201ENST00000336798 POLIQ9UNA4 740 aa13.74□□□□□ -0.21
SDC3-201ENST00000336798 PTGDRQ13258 359 aa13.74□□□□□ -0.21
SDC3-201ENST00000336798 EXT2Q93063 718 aa13.74□□□□□ -0.21
SDC3-201ENST00000336798 CFAP36Q96G28 342 aa13.74□□□□□ -0.21
SDC3-201ENST00000336798 MTRQ99707 1265 aa13.74□□□□□ -0.21
SDC3-201ENST00000336798 MOSPD1Q9UJG1 213 aa13.74□□□□□ -0.21
SDC3-201ENST00000336798 INHBAP08476 426 aa13.74□□□□□ -0.21
SDC3-201ENST00000336798 LCA5Q86VQ0 697 aa13.74□□□□□ -0.21
SDC3-201ENST00000336798 AP5M1Q9H0R1 490 aa13.74□□□□□ -0.21
SDC3-201ENST00000336798 PPP2R2CQ9Y2T4 447 aa13.74□□□□□ -0.21
SDC3-201ENST00000336798 ZFYVE9O95405 1425 aa13.74□□□□□ -0.21
SDC3-201ENST00000336798 TFAMQ00059 246 aaKnown RBP13.74□□□□□ -0.21
SDC3-201ENST00000336798 MIGA2Q7L4E1 593 aa13.74□□□□□ -0.21
SDC3-201ENST00000336798 CSRNP1Q96S65 589 aa13.74□□□□□ -0.21
SDC3-201ENST00000336798 ZMYM6O95789 1325 aa13.74□□□□□ -0.21
SDC3-201ENST00000336798 SYCP2Q9BX26 1530 aa13.74□□□□□ -0.21
SDC3-201ENST00000336798 PDE6AP16499 860 aa13.74□□□□□ -0.21
SDC3-201ENST00000336798 CD58P19256 250 aa13.74□□□□□ -0.21
SDC3-201ENST00000336798 TEX2Q8IWB9 1127 aa13.74□□□□□ -0.21
SDC3-201ENST00000336798 KIAA1468Q9P260 1216 aa13.74□□□□□ -0.21
SDC3-201ENST00000336798 COL4A3BPQ9Y5P4 624 aa13.74□□□□□ -0.21
SDC3-201ENST00000336798 NDUFA8P51970 172 aa13.73□□□□□ -0.21
SDC3-201ENST00000336798 EXOC3L4Q17RC7 722 aa13.73□□□□□ -0.21
SDC3-201ENST00000336798 HABP4Q5JVS0 413 aaKnown RBP13.73□□□□□ -0.21
SDC3-201ENST00000336798 METTL23Q86XA0 190 aa13.73□□□□□ -0.21
SDC3-201ENST00000336798 CHAMP1Q96JM3 812 aa13.73□□□□□ -0.21
SDC3-201ENST00000336798 ANLNQ9NQW6 1124 aa13.73□□□□□ -0.21
SDC3-201ENST00000336798 LMCD1Q9NZU5 365 aa13.73□□□□□ -0.21
SDC3-201ENST00000336798 N4BP1O75113 896 aaKnown RBP13.73□□□□□ -0.21
SDC3-201ENST00000336798 ATP2B4P23634 1241 aa13.73□□□□□ -0.21
SDC3-201ENST00000336798 PPP2R5BQ15173 497 aa13.73□□□□□ -0.21
SDC3-201ENST00000336798 ZKSCAN8Q15776 578 aaPredicted RBP13.73□□□□□ -0.21
SDC3-201ENST00000336798 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.73□□□□□ -0.21
SDC3-201ENST00000336798 CDKL2Q92772 493 aa13.73□□□□□ -0.21
SDC3-201ENST00000336798 TRIM4Q9C037 500 aa13.73□□□□□ -0.21
SDC3-201ENST00000336798 TPCN1Q9ULQ1 816 aa13.73□□□□□ -0.21
SDC3-201ENST00000336798 GSTA4O15217 222 aa13.73□□□□□ -0.21
SDC3-201ENST00000336798 PPFIA4O75335 1185 aa13.73□□□□□ -0.21
SDC3-201ENST00000336798 RAB44Q7Z6P3 723 aaPredicted RBP13.73□□□□□ -0.21
SDC3-201ENST00000336798 HAUS8Q9BT25 410 aa13.73□□□□□ -0.21
SDC3-201ENST00000336798 CUL7Q14999 1698 aa13.73□□□□□ -0.21
SDC3-201ENST00000336798 PPEF1O14829 653 aaPredicted RBP13.73□□□□□ -0.21
SDC3-201ENST00000336798 SART1O43290 800 aaKnown RBP13.73□□□□□ -0.21
SDC3-201ENST00000336798 ADORA1P30542 326 aa13.73□□□□□ -0.21
SDC3-201ENST00000336798 KRT33BQ14525 404 aa13.73□□□□□ -0.21
SDC3-201ENST00000336798 PPWD1Q96BP3 646 aaKnown RBP13.73□□□□□ -0.21
SDC3-201ENST00000336798 HOMER3Q9NSC5 361 aa13.73□□□□□ -0.21
SDC3-201ENST00000336798 SYNDIG1LA6NDD5 238 aa13.73□□□□□ -0.21
SDC3-201ENST00000336798 TTC4O95801 387 aa13.73□□□□□ -0.21
SDC3-201ENST00000336798 PTPREP23469 700 aa13.73□□□□□ -0.21
SDC3-201ENST00000336798 POLR2BP30876 1174 aaKnown RBP13.73□□□□□ -0.21
SDC3-201ENST00000336798 PTK2Q05397 1052 aa13.73□□□□□ -0.21
SDC3-201ENST00000336798 TFDP1Q14186 410 aa13.73□□□□□ -0.21
SDC3-201ENST00000336798 CYP4F22Q6NT55 531 aa13.73□□□□□ -0.21
SDC3-201ENST00000336798 CNOT6LQ96LI5 555 aaKnown RBP13.73□□□□□ -0.21
SDC3-201ENST00000336798 TBK1Q9UHD2 729 aa13.73□□□□□ -0.21
SDC3-201ENST00000336798 SFMBT1Q9UHJ3 866 aa13.73□□□□□ -0.21
SDC3-201ENST00000336798 KCNG1Q9UIX4 513 aa13.73□□□□□ -0.21
SDC3-201ENST00000336798 EIF4A1P60842 406 aaKnown RBP13.72□□□□□ -0.21
SDC3-201ENST00000336798 DYNLL1P63167 89 aaKnown RBP13.72□□□□□ -0.21
SDC3-201ENST00000336798 TMED2Q15363 201 aa13.72□□□□□ -0.21
SDC3-201ENST00000336798 ADALQ6DHV7 355 aa13.72□□□□□ -0.21
SDC3-201ENST00000336798 PFDN1O60925 122 aa13.72□□□□□ -0.21
SDC3-201ENST00000336798 LIG3P49916 1009 aa13.72□□□□□ -0.21
SDC3-201ENST00000336798 PHLDB3Q6NSJ2 640 aa13.72□□□□□ -0.21
SDC3-201ENST00000336798 ANGPTL8Q6UXH0 198 aa13.72□□□□□ -0.21
SDC3-201ENST00000336798 STAG1Q8WVM7 1258 aa13.72□□□□□ -0.21
SDC3-201ENST00000336798 GREM2Q9H772 168 aa13.72□□□□□ -0.21
SDC3-201ENST00000336798 KMT5AQ9NQR1 393 aa13.72□□□□□ -0.21
SDC3-201ENST00000336798 LMBRD1Q9NUN5 540 aa13.72□□□□□ -0.21
SDC3-201ENST00000336798 CPSF3Q9UKF6 684 aaKnown RBP13.72□□□□□ -0.21
SDC3-201ENST00000336798 WDR91A4D1P6 747 aa13.72□□□□□ -0.21
SDC3-201ENST00000336798 HSPD1P10809 573 aaKnown RBP13.72□□□□□ -0.21
SDC3-201ENST00000336798 ATP5JP18859 108 aa13.72□□□□□ -0.21
SDC3-201ENST00000336798 MAP3K21Q5TCX8 1036 aa13.72□□□□□ -0.21
SDC3-201ENST00000336798 TMEM63CQ9P1W3 806 aa13.72□□□□□ -0.21
SDC3-201ENST00000336798 ABT1Q9ULW3 272 aaKnown RBP13.72□□□□□ -0.21
SDC3-201ENST00000336798 ASXL2Q76L83 1435 aa13.72□□□□□ -0.21
SDC3-201ENST00000336798 TRIM37O94972 964 aa13.72□□□□□ -0.21
SDC3-201ENST00000336798 MFAP3P55082 362 aa13.72□□□□□ -0.21
SDC3-201ENST00000336798 FAM26FQ5R3K3 315 aa13.72□□□□□ -0.21
SDC3-201ENST00000336798 GOLGA5Q8TBA6 731 aa13.72□□□□□ -0.21
SDC3-201ENST00000336798 CAPS2Q9BXY5 557 aa13.72□□□□□ -0.21
SDC3-201ENST00000336798 PALD1Q9ULE6 856 aa13.72□□□□□ -0.21
SDC3-201ENST00000336798 A0A087WWV3 80 aa13.72□□□□□ -0.21
SDC3-201ENST00000336798 CXCR5P32302 372 aa13.72□□□□□ -0.21
SDC3-201ENST00000336798 E2F4Q16254 413 aa13.72□□□□□ -0.21
SDC3-201ENST00000336798 KRT82Q9NSB4 513 aa13.72□□□□□ -0.21
SDC3-201ENST00000336798 TYW1Q9NV66 732 aaKnown RBP13.72□□□□□ -0.21
SDC3-201ENST00000336798 HACD3Q9P035 362 aa13.72□□□□□ -0.21
SDC3-201ENST00000336798 LARSQ9P2J5 1176 aaKnown RBP13.72□□□□□ -0.21
SDC3-201ENST00000336798 PRAG1Q86YV5 1406 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms