RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 CHL1O00533 1208 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 PER1O15534 1290 aaPredicted RBP2.04□□□□□ -2.08
LINC00643-201ENST00000334389 TFRCP02786 760 aaKnown RBP2.04□□□□□ -2.08
LINC00643-201ENST00000334389 GSTO1P78417 241 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 USP17L24Q0WX57 530 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 MTX1Q13505 466 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 PDE3AQ14432 1141 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 EAPPQ56P03 285 aaPredicted RBP2.04□□□□□ -2.08
LINC00643-201ENST00000334389 METTL3Q86U44 580 aaKnown RBP2.04□□□□□ -2.08
LINC00643-201ENST00000334389 ZNF280BQ86YH2 543 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 C7orf61Q8IZ16 206 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 KLHL34Q8N239 644 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 SLC22A17Q8WUG5 538 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 FTHL17Q9BXU8 183 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 SH2D4AQ9H788 454 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 DNAAF2Q9NVR5 837 aaKnown RBP2.04□□□□□ -2.08
LINC00643-201ENST00000334389 SWAP70Q9UH65 585 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 FGF19O95750 216 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 FGBP02675 491 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 NUDT7P0C024 238 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 FAM189BP81408 668 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 ARHGAP4P98171 946 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 MTMR3Q13615 1198 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 TESK1Q15569 626 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 SPTY2D1Q68D10 685 aaPredicted RBP2.04□□□□□ -2.08
LINC00643-201ENST00000334389 IL17REQ8NFR9 667 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 FAM174AQ8TBP5 190 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 SPATA18Q8TC71 538 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 PIGOQ8TEQ8 1089 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 ADAMTS14Q8WXS8 1223 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 DPF3Q92784 378 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 MKL1Q969V6 931 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 C11orf84Q9BUA3 381 aaPredicted RBP2.04□□□□□ -2.08
LINC00643-201ENST00000334389 CXXC4Q9H2H0 198 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 DENND2AQ9ULE3 1009 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 PCDHGB7Q9Y5F8 929 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 FLT1P17948 1338 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 SERINC4A6NH21 518 aa2.03□□□□□ -2.08
LINC00643-201ENST00000334389 K7ELQ4 463 aaPredicted RBP2.03□□□□□ -2.08
LINC00643-201ENST00000334389 REC8O95072 547 aa2.03□□□□□ -2.08
LINC00643-201ENST00000334389 IGLV3-19P01714 112 aa2.03□□□□□ -2.08
LINC00643-201ENST00000334389 PRKCGP05129 697 aa2.03□□□□□ -2.08
LINC00643-201ENST00000334389 POU3F2P20265 443 aaPredicted RBP2.03□□□□□ -2.08
LINC00643-201ENST00000334389 SCP2P22307 547 aa2.03□□□□□ -2.08
LINC00643-201ENST00000334389 VARSP26640 1264 aaKnown RBP2.03□□□□□ -2.08
LINC00643-201ENST00000334389 PLCD1P51178 756 aa2.03□□□□□ -2.08
LINC00643-201ENST00000334389 ATXN1P54253 815 aaKnown RBP2.03□□□□□ -2.08
LINC00643-201ENST00000334389 CTSWP56202 376 aa2.03□□□□□ -2.08
LINC00643-201ENST00000334389 MAP7Q14244 749 aa2.03□□□□□ -2.08
LINC00643-201ENST00000334389 HSP90AB2PQ58FF8 381 aa2.03□□□□□ -2.08
LINC00643-201ENST00000334389 ZFYVE27Q5T4F4 411 aa2.03□□□□□ -2.08
LINC00643-201ENST00000334389 DDX54Q8TDD1 881 aaKnown RBP2.03□□□□□ -2.08
LINC00643-201ENST00000334389 FAM84BQ96KN1 310 aaPredicted RBP2.03□□□□□ -2.08
LINC00643-201ENST00000334389 TMEM175Q9BSA9 504 aa2.03□□□□□ -2.08
LINC00643-201ENST00000334389 KATNAL1Q9BW62 490 aa2.03□□□□□ -2.08
LINC00643-201ENST00000334389 DPH1Q9BZG8 443 aa2.03□□□□□ -2.08
LINC00643-201ENST00000334389 INSL6Q9Y581 213 aa2.03□□□□□ -2.08
LINC00643-201ENST00000334389 CUL9Q8IWT3 2517 aa2.03□□□□□ -2.08
LINC00643-201ENST00000334389 C2CD2LO14523 706 aa2.03□□□□□ -2.08
LINC00643-201ENST00000334389 MSTNO14793 375 aa2.03□□□□□ -2.08
LINC00643-201ENST00000334389 DFNA5O60443 496 aa2.03□□□□□ -2.08
LINC00643-201ENST00000334389 ECI2O75521 394 aa2.03□□□□□ -2.08
LINC00643-201ENST00000334389 SP9P0CG40 484 aa2.03□□□□□ -2.08
LINC00643-201ENST00000334389 PCP11498 1178 aaKnown RBP2.03□□□□□ -2.08
LINC00643-201ENST00000334389 GMPRP36959 345 aa2.03□□□□□ -2.08
LINC00643-201ENST00000334389 CCT4P50991 539 aaKnown RBP2.03□□□□□ -2.08
LINC00643-201ENST00000334389 DLGAP5Q15398 846 aa2.03□□□□□ -2.08
LINC00643-201ENST00000334389 NAB2Q15742 525 aa2.03□□□□□ -2.08
LINC00643-201ENST00000334389 RNF135Q8IUD6 432 aa2.03□□□□□ -2.08
LINC00643-201ENST00000334389 SPATA20Q8TB22 786 aa2.03□□□□□ -2.08
LINC00643-201ENST00000334389 ERLEC1Q96DZ1 483 aa2.03□□□□□ -2.08
LINC00643-201ENST00000334389 METTL22Q9BUU2 404 aaPredicted RBP2.03□□□□□ -2.08
LINC00643-201ENST00000334389 RNF208Q9H0X6 261 aa2.03□□□□□ -2.08
LINC00643-201ENST00000334389 GREM2Q9H772 168 aa2.03□□□□□ -2.08
LINC00643-201ENST00000334389 RXFP1Q9HBX9 757 aa2.03□□□□□ -2.08
LINC00643-201ENST00000334389 NGRNQ9NPE2 291 aaKnown RBP2.03□□□□□ -2.08
LINC00643-201ENST00000334389 DISC1Q9NRI5 854 aa2.03□□□□□ -2.08
LINC00643-201ENST00000334389 FNIP2Q9P278 1114 aa2.03□□□□□ -2.08
LINC00643-201ENST00000334389 RABGEF1Q9UJ41 708 aa2.03□□□□□ -2.08
LINC00643-201ENST00000334389 NIP7Q9Y221 180 aaKnown RBP eCLIP2.03□□□□□ -2.08
LINC00643-201ENST00000334389 AKAP2Q9Y2D5 859 aa2.03□□□□□ -2.08
LINC00643-201ENST00000334389 YBX2Q9Y2T7 364 aaKnown RBP2.03□□□□□ -2.08
LINC00643-201ENST00000334389 NCANO14594 1321 aa2.03□□□□□ -2.08
LINC00643-201ENST00000334389 SCN8AQ9UQD0 1980 aa2.03□□□□□ -2.09
LINC00643-201ENST00000334389 A0A0A0MRY4 1105 aa2.02□□□□□ -2.09
LINC00643-201ENST00000334389 MAN2B1O00754 1011 aa2.02□□□□□ -2.09
LINC00643-201ENST00000334389 WDR46O15213 610 aaKnown RBP2.02□□□□□ -2.09
LINC00643-201ENST00000334389 HOXA2O43364 376 aa2.02□□□□□ -2.09
LINC00643-201ENST00000334389 GDF9O60383 454 aa2.02□□□□□ -2.09
LINC00643-201ENST00000334389 MAFO75444 373 aaPredicted RBP2.02□□□□□ -2.09
LINC00643-201ENST00000334389 NUDT1P36639 197 aa2.02□□□□□ -2.09
LINC00643-201ENST00000334389 ERVK-9P63128 1117 aa2.02□□□□□ -2.09
LINC00643-201ENST00000334389 ERVK-24P63145 666 aa2.02□□□□□ -2.09
LINC00643-201ENST00000334389 POU5F1Q01860 360 aaKnown RBP2.02□□□□□ -2.09
LINC00643-201ENST00000334389 ZNF268Q14587 947 aaPredicted RBP2.02□□□□□ -2.09
LINC00643-201ENST00000334389 PLEKHG4Q58EX7 1191 aa2.02□□□□□ -2.09
LINC00643-201ENST00000334389 DGKKQ5KSL6 1271 aa2.02□□□□□ -2.09
LINC00643-201ENST00000334389 ANKRD54Q6NXT1 300 aa2.02□□□□□ -2.09
LINC00643-201ENST00000334389 BTNL9Q6UXG8 535 aa2.02□□□□□ -2.09
LINC00643-201ENST00000334389 ZNF574Q6ZN55 896 aaPredicted RBP2.02□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms