RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 ATP8B4Q8TF62 1192 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 RUBCNQ92622 972 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 FAM192AQ9GZU8 254 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 ADAM21Q9UKJ8 722 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 ZNF806P0C7X5 589 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 ITKQ08881 620 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 IFT88Q13099 833 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 ART3Q13508 389 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 IQCB1Q15051 598 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 ALKBH8Q96BT7 664 aaKnown RBP8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 JPH4Q96JJ6 628 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 ZFP42Q96MM3 310 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 IMPG2Q9BZV3 1241 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 CSRNP2Q9H175 543 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 FANCEQ9HB96 536 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 SYBUQ9NX95 663 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 PPP6R1Q9UPN7 881 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 PLCL2Q9UPR0 1127 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 SYT1P21579 422 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 OSBPP22059 807 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 SOX5P35711 763 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 AARS2Q5JTZ9 985 aaKnown RBP8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 BICDL1Q6ZP65 573 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 BRSK2Q8IWQ3 736 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 GADD45GIP1Q8TAE8 222 aaPredicted RBP8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 DNAJC9Q8WXX5 260 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 CCDC115Q96NT0 180 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 ZC3H7BQ9UGR2 993 aaKnown RBP8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 SERPINB2P05120 415 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 GUCY2CP25092 1073 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 MAGEA8P43361 318 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 CCT5P48643 541 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 GUCY2FP51841 1108 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 ALDH18A1P54886 795 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 ADCY1Q08828 1119 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 TERF2Q15554 542 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 SND1Q7KZF4 910 aaKnown RBP eCLIP8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 IL1RAPL2Q9NP60 686 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 RNF123Q5XPI4 1314 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 SMCO2A6NFE2 343 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 CTNND1O60716 968 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 TADA3O75528 432 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 BAIAP3O94812 1187 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 MYL1P05976 194 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 UBTFL1P0CB47 393 aaPredicted RBP8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 ACTN1P12814 892 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 SLC20A2Q08357 652 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 ABRAXAS1Q6UWZ7 409 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 RGS9BPQ6ZS82 235 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 KIAA0825Q8IV33 1275 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 ZNF654Q8IZM8 581 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 UHMK1Q8TAS1 419 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 SLC9A7Q96T83 725 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 OSBPL1AQ9BXW6 950 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 RAB34Q9BZG1 259 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 ADNPQ9H2P0 1102 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 TAF4O00268 1085 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 PPM1BO75688 479 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 ASS1P00966 412 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 CCDC166P0CW27 439 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 AFMP43652 599 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 PDE6CP51160 858 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 LGALS3BPQ08380 585 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 MYO1EQ12965 1108 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 RAPGEF1Q13905 1077 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 UTS2BQ765I0 119 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 FAM200AQ8TCP9 573 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 KRT12Q99456 494 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 TYW1Q9NV66 732 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 RABL2BQ9UNT1 228 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 CCDC151A5D8V7 595 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 C16orf96A6NNT2 1141 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 H0Y3Z8 333 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 RPS2P15880 293 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 KRT27Q7Z3Y8 459 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 FAF2Q96CS3 445 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 FAM129AQ9BZQ8 928 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 NACA2Q9H009 215 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 ARHGAP28Q9P2N2 729 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 INPP5FQ9Y2H2 1132 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 LRCH1Q9Y2L9 728 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 PHLDB1Q86UU1 1377 aa8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 TOP2AP11388 1531 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-201ENST00000313860 PAPOLAP51003 745 aaKnown RBP8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 FKBP4Q02790 459 aaKnown RBP eCLIP8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 CLCA4Q14CN2 919 aa8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 ESCO1Q5FWF5 840 aa8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 NSMCE1Q8WV22 266 aa8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 TMEM5Q9Y2B1 443 aa8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 POFUT2Q9Y2G5 429 aa8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 FESP07332 822 aa8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 NCF2P19878 526 aaPredicted RBP8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 HDLBPQ00341 1268 aaKnown RBP8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 PRKG2Q13237 762 aa8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 DAB2IPQ5VWQ8 1189 aa8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 LRRC8EQ6NSJ5 796 aa8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 CCDC60Q8IWA6 550 aaPredicted RBP8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 TDRD7Q8NHU6 1098 aaKnown RBP8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 CCDC42Q96M95 316 aa8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 LRRC27Q9C0I9 530 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms