RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 SLC38A10Q9HBR0 1119 aa11.27□□□□□ -0.6
CLIP1-201ENST00000302528 MED4Q9NPJ6 270 aa11.27□□□□□ -0.6
CLIP1-201ENST00000302528 SLC8A2Q9UPR5 921 aa11.27□□□□□ -0.6
CLIP1-201ENST00000302528 EFCAB14O75071 495 aa11.27□□□□□ -0.61
CLIP1-201ENST00000302528 NCF2P19878 526 aaPredicted RBP11.27□□□□□ -0.61
CLIP1-201ENST00000302528 TFAP4Q01664 338 aa11.27□□□□□ -0.61
CLIP1-201ENST00000302528 OCRLQ01968 901 aa11.27□□□□□ -0.61
CLIP1-201ENST00000302528 TMED2Q15363 201 aa11.27□□□□□ -0.61
CLIP1-201ENST00000302528 TNNI3KQ59H18 835 aa11.27□□□□□ -0.61
CLIP1-201ENST00000302528 PCGF5Q86SE9 256 aa11.27□□□□□ -0.61
CLIP1-201ENST00000302528 NIM1KQ8IY84 436 aa11.27□□□□□ -0.61
CLIP1-201ENST00000302528 ACRBPQ8NEB7 543 aa11.27□□□□□ -0.61
CLIP1-201ENST00000302528 TGFBRAP1Q8WUH2 860 aa11.27□□□□□ -0.61
CLIP1-201ENST00000302528 NCLNQ969V3 563 aa11.27□□□□□ -0.61
CLIP1-201ENST00000302528 TRPC5Q9UL62 973 aaPredicted RBP11.27□□□□□ -0.61
CLIP1-201ENST00000302528 FPGT-TNNI3KV9GXZ4 949 aa11.27□□□□□ -0.61
CLIP1-201ENST00000302528 MESDQ14696 234 aa11.27□□□□□ -0.61
CLIP1-201ENST00000302528 PDXDC1Q6P996 788 aa11.27□□□□□ -0.61
CLIP1-201ENST00000302528 PLEKHM2Q8IWE5 1019 aa11.27□□□□□ -0.61
CLIP1-201ENST00000302528 ZNF653Q96CK0 615 aa11.27□□□□□ -0.61
CLIP1-201ENST00000302528 TTC25Q96NG3 672 aa11.27□□□□□ -0.61
CLIP1-201ENST00000302528 TRIM55Q9BYV6 548 aa11.27□□□□□ -0.61
CLIP1-201ENST00000302528 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.27□□□□□ -0.61
CLIP1-201ENST00000302528 ANGPTL2Q9UKU9 493 aa11.27□□□□□ -0.61
CLIP1-201ENST00000302528 SBNO1A3KN83 1393 aa11.27□□□□□ -0.61
CLIP1-201ENST00000302528 MAFGO15525 162 aa11.27□□□□□ -0.61
CLIP1-201ENST00000302528 SKIP12755 728 aa11.27□□□□□ -0.61
CLIP1-201ENST00000302528 GRAMD4Q6IC98 578 aa11.27□□□□□ -0.61
CLIP1-201ENST00000302528 METTL14Q9HCE5 456 aaKnown RBP11.27□□□□□ -0.61
CLIP1-201ENST00000302528 KDM6BO15054 1643 aa11.26□□□□□ -0.61
CLIP1-201ENST00000302528 SH3TC1Q8TE82 1336 aa11.26□□□□□ -0.61
CLIP1-201ENST00000302528 FBLN1P23142 703 aa11.26□□□□□ -0.61
CLIP1-201ENST00000302528 BPIFB4P59827 614 aa11.26□□□□□ -0.61
CLIP1-201ENST00000302528 TAF11Q15544 211 aa11.26□□□□□ -0.61
CLIP1-201ENST00000302528 TTC30BQ8N4P2 665 aa11.26□□□□□ -0.61
CLIP1-201ENST00000302528 NRBP2Q9NSY0 501 aa11.26□□□□□ -0.61
CLIP1-201ENST00000302528 CSPG5O95196 566 aa11.26□□□□□ -0.61
CLIP1-201ENST00000302528 TECP42680 631 aa11.26□□□□□ -0.61
CLIP1-201ENST00000302528 ARHGEF18Q6ZSZ5 1173 aa11.26□□□□□ -0.61
CLIP1-201ENST00000302528 MAGOHBQ96A72 148 aaKnown RBP11.26□□□□□ -0.61
CLIP1-201ENST00000302528 PCDHB4Q9Y5E5 795 aa11.26□□□□□ -0.61
CLIP1-201ENST00000302528 SYNDIG1LA6NDD5 238 aa11.26□□□□□ -0.61
CLIP1-201ENST00000302528 ESRRBO95718 433 aa11.26□□□□□ -0.61
CLIP1-201ENST00000302528 CEBPAP49715 358 aaPredicted RBP11.26□□□□□ -0.61
CLIP1-201ENST00000302528 SLFN12Q8IYM2 578 aa11.26□□□□□ -0.61
CLIP1-201ENST00000302528 KLHL29Q96CT2 875 aa11.26□□□□□ -0.61
CLIP1-201ENST00000302528 RMDN2Q96LZ7 410 aa11.26□□□□□ -0.61
CLIP1-201ENST00000302528 ZBTB18Q99592 522 aa11.26□□□□□ -0.61
CLIP1-201ENST00000302528 TUBB6Q9BUF5 446 aa11.26□□□□□ -0.61
CLIP1-201ENST00000302528 TEKT3Q9BXF9 490 aa11.26□□□□□ -0.61
CLIP1-201ENST00000302528 LRFN2Q9ULH4 789 aa11.26□□□□□ -0.61
CLIP1-201ENST00000302528 SYCE1LA8MT33 242 aa11.26□□□□□ -0.61
CLIP1-201ENST00000302528 ZRANB2O95218 330 aaKnown RBP eCLIP11.26□□□□□ -0.61
CLIP1-201ENST00000302528 MT-ND3P03897 115 aa11.26□□□□□ -0.61
CLIP1-201ENST00000302528 MFAP3P55082 362 aa11.26□□□□□ -0.61
CLIP1-201ENST00000302528 SNX19Q92543 992 aa11.26□□□□□ -0.61
CLIP1-201ENST00000302528 HAUS4Q9H6D7 363 aa11.26□□□□□ -0.61
CLIP1-201ENST00000302528 WARS2Q9UGM6 360 aaKnown RBP11.26□□□□□ -0.61
CLIP1-201ENST00000302528 BLMP54132 1417 aaPredicted RBP11.26□□□□□ -0.61
CLIP1-201ENST00000302528 EFCAB8A8MWE9 144 aa11.26□□□□□ -0.61
CLIP1-201ENST00000302528 WDR64B1ANS9 1081 aa11.26□□□□□ -0.61
CLIP1-201ENST00000302528 H7C1D1 291 aa11.26□□□□□ -0.61
CLIP1-201ENST00000302528 MCF2LO15068 1137 aa11.26□□□□□ -0.61
CLIP1-201ENST00000302528 POLR2MP0CAP2 368 aa11.26□□□□□ -0.61
CLIP1-201ENST00000302528 ARL4AP40617 200 aa11.26□□□□□ -0.61
CLIP1-201ENST00000302528 EHHADHQ08426 723 aa11.26□□□□□ -0.61
CLIP1-201ENST00000302528 TFDP1Q14186 410 aa11.26□□□□□ -0.61
CLIP1-201ENST00000302528 MCTP2Q6DN12 878 aa11.26□□□□□ -0.61
CLIP1-201ENST00000302528 CYP4F22Q6NT55 531 aa11.26□□□□□ -0.61
CLIP1-201ENST00000302528 SRRM1Q8IYB3 904 aaKnown RBP11.26□□□□□ -0.61
CLIP1-201ENST00000302528 CHCHD3Q9NX63 227 aaKnown RBP11.26□□□□□ -0.61
CLIP1-201ENST00000302528 ZSCAN32Q9NX65 697 aa11.26□□□□□ -0.61
CLIP1-201ENST00000302528 PCDHA12Q9UN75 941 aa11.26□□□□□ -0.61
CLIP1-201ENST00000302528 PDE8AO60658 829 aa11.25□□□□□ -0.61
CLIP1-201ENST00000302528 PYGBP11216 843 aa11.25□□□□□ -0.61
CLIP1-201ENST00000302528 ADAM9Q13443 819 aa11.25□□□□□ -0.61
CLIP1-201ENST00000302528 FAM47AQ5JRC9 791 aa11.25□□□□□ -0.61
CLIP1-201ENST00000302528 FAM160B1Q5W0V3 765 aa11.25□□□□□ -0.61
CLIP1-201ENST00000302528 KRT27Q7Z3Y8 459 aa11.25□□□□□ -0.61
CLIP1-201ENST00000302528 LRRC59Q96AG4 307 aaKnown RBP11.25□□□□□ -0.61
CLIP1-201ENST00000302528 DCAF5Q96JK2 942 aa11.25□□□□□ -0.61
CLIP1-201ENST00000302528 MMTAG2Q9BU76 263 aaKnown RBP11.25□□□□□ -0.61
CLIP1-201ENST00000302528 SNX25Q9H3E2 840 aa11.25□□□□□ -0.61
CLIP1-201ENST00000302528 COG4Q9H9E3 785 aa11.25□□□□□ -0.61
CLIP1-201ENST00000302528 GIMAP4Q9NUV9 329 aa11.25□□□□□ -0.61
CLIP1-201ENST00000302528 CCNL1Q9UK58 526 aaPredicted RBP11.25□□□□□ -0.61
CLIP1-201ENST00000302528 THRAP3Q9Y2W1 955 aaKnown RBP11.25□□□□□ -0.61
CLIP1-201ENST00000302528 COL4A3BPQ9Y5P4 624 aa11.25□□□□□ -0.61
CLIP1-201ENST00000302528 E2F6O75461 281 aa11.25□□□□□ -0.61
CLIP1-201ENST00000302528 PMLP29590 882 aa11.25□□□□□ -0.61
CLIP1-201ENST00000302528 KIAA1841Q6NSI8 718 aa11.25□□□□□ -0.61
CLIP1-201ENST00000302528 MTRQ99707 1265 aa11.25□□□□□ -0.61
CLIP1-201ENST00000302528 TRAIPQ9BWF2 469 aa11.25□□□□□ -0.61
CLIP1-201ENST00000302528 PSTPIP2Q9H939 334 aa11.25□□□□□ -0.61
CLIP1-201ENST00000302528 MID2Q9UJV3 735 aa11.25□□□□□ -0.61
CLIP1-201ENST00000302528 MRPL11Q9Y3B7 192 aaKnown RBP11.25□□□□□ -0.61
CLIP1-201ENST00000302528 SEC24BO95487 1268 aa11.25□□□□□ -0.61
CLIP1-201ENST00000302528 ATP2B4P23634 1241 aa11.25□□□□□ -0.61
CLIP1-201ENST00000302528 GADL1Q6ZQY3 521 aa11.25□□□□□ -0.61
CLIP1-201ENST00000302528 HINFPQ9BQA5 517 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms