RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 NWD1Q149M9 1564 aa7.01□□□□□ -1.29
VPS35-201ENST00000299138 MEFVO15553 781 aaPredicted RBP7.01□□□□□ -1.29
VPS35-201ENST00000299138 NBNO60934 754 aa7.01□□□□□ -1.29
VPS35-201ENST00000299138 KRT14P02533 472 aa7.01□□□□□ -1.29
VPS35-201ENST00000299138 S100BP04271 92 aaPredicted RBP7.01□□□□□ -1.29
VPS35-201ENST00000299138 FDPSP14324 419 aaKnown RBP7.01□□□□□ -1.29
VPS35-201ENST00000299138 GNA11P29992 359 aa7.01□□□□□ -1.29
VPS35-201ENST00000299138 GNL1P36915 607 aaPredicted RBP7.01□□□□□ -1.29
VPS35-201ENST00000299138 LONRF3Q496Y0 759 aa7.01□□□□□ -1.29
VPS35-201ENST00000299138 METTL24Q5JXM2 366 aa7.01□□□□□ -1.29
VPS35-201ENST00000299138 MGARPQ8TDB4 240 aa7.01□□□□□ -1.29
VPS35-201ENST00000299138 BCAS4Q8TDM0 211 aa7.01□□□□□ -1.29
VPS35-201ENST00000299138 PPANQ9NQ55 473 aaKnown RBP7.01□□□□□ -1.29
VPS35-201ENST00000299138 IGKV5-2P06315 115 aa7□□□□□ -1.29
VPS35-201ENST00000299138 GHRP10912 638 aa7□□□□□ -1.29
VPS35-201ENST00000299138 HNRNPH3P31942 346 aaKnown RBP7□□□□□ -1.29
VPS35-201ENST00000299138 SLC8A3P57103 927 aa7□□□□□ -1.29
VPS35-201ENST00000299138 NLRP5P59047 1200 aa7□□□□□ -1.29
VPS35-201ENST00000299138 TTC38Q5R3I4 469 aa7□□□□□ -1.29
VPS35-201ENST00000299138 RCSD1Q6JBY9 416 aa7□□□□□ -1.29
VPS35-201ENST00000299138 CCNI2Q6ZMN8 369 aaPredicted RBP7□□□□□ -1.29
VPS35-201ENST00000299138 TRMT1LQ7Z2T5 733 aaKnown RBP7□□□□□ -1.29
VPS35-201ENST00000299138 TRAPPC11Q7Z392 1133 aa7□□□□□ -1.29
VPS35-201ENST00000299138 HOOK2Q96ED9 719 aa7□□□□□ -1.29
VPS35-201ENST00000299138 TCEANC2Q96MN5 208 aa7□□□□□ -1.29
VPS35-201ENST00000299138 TSC22D3Q99576 134 aa7□□□□□ -1.29
VPS35-201ENST00000299138 MAK16Q9BXY0 300 aaKnown RBP7□□□□□ -1.29
VPS35-201ENST00000299138 THEGQ9P2T0 379 aa7□□□□□ -1.29
VPS35-201ENST00000299138 KCNJ18B7U540 433 aa7□□□□□ -1.29
VPS35-201ENST00000299138 TRPA1O75762 1119 aa7□□□□□ -1.29
VPS35-201ENST00000299138 ARID5AQ03989 594 aa7□□□□□ -1.29
VPS35-201ENST00000299138 PDE4BQ07343 736 aa7□□□□□ -1.29
VPS35-201ENST00000299138 KCNJ12Q14500 433 aa7□□□□□ -1.29
VPS35-201ENST00000299138 KDM7AQ6ZMT4 941 aa7□□□□□ -1.29
VPS35-201ENST00000299138 KSR1Q8IVT5 923 aa7□□□□□ -1.29
VPS35-201ENST00000299138 HELBQ8NG08 1087 aaPredicted RBP7□□□□□ -1.29
VPS35-201ENST00000299138 IL25Q9H293 177 aa7□□□□□ -1.29
VPS35-201ENST00000299138 Q9H521 79 aa7□□□□□ -1.29
VPS35-201ENST00000299138 SYNCQ9H7C4 482 aa7□□□□□ -1.29
VPS35-201ENST00000299138 ABHD10Q9NUJ1 306 aa7□□□□□ -1.29
VPS35-201ENST00000299138 LARSQ9P2J5 1176 aaKnown RBP7□□□□□ -1.29
VPS35-201ENST00000299138 GUCA1BQ9UMX6 200 aa7□□□□□ -1.29
VPS35-201ENST00000299138 G3BP2Q9UN86 482 aaKnown RBP7□□□□□ -1.29
VPS35-201ENST00000299138 LOC102724159A0A0B4J2E5 919 aa7□□□□□ -1.29
VPS35-201ENST00000299138 SMTNP53814 917 aa7□□□□□ -1.29
VPS35-201ENST00000299138 LRRC63Q05C16 580 aa7□□□□□ -1.29
VPS35-201ENST00000299138 PWP2Q15269 919 aaKnown RBP7□□□□□ -1.29
VPS35-201ENST00000299138 SLC9C1Q4G0N8 1177 aa7□□□□□ -1.29
VPS35-201ENST00000299138 SH3RF1Q7Z6J0 888 aa7□□□□□ -1.29
VPS35-201ENST00000299138 METTL16Q86W50 562 aaKnown RBP7□□□□□ -1.29
VPS35-201ENST00000299138 PSPC1Q8WXF1 523 aaKnown RBP7□□□□□ -1.29
VPS35-201ENST00000299138 CHAMP1Q96JM3 812 aa7□□□□□ -1.29
VPS35-201ENST00000299138 RILPQ96NA2 401 aa7□□□□□ -1.29
VPS35-201ENST00000299138 ERGIC2Q96RQ1 377 aa7□□□□□ -1.29
VPS35-201ENST00000299138 SUFUQ9UMX1 484 aa7□□□□□ -1.29
VPS35-201ENST00000299138 CLIC4Q9Y696 253 aa7□□□□□ -1.29
VPS35-201ENST00000299138 FGAP02671 866 aa7□□□□□ -1.29
VPS35-201ENST00000299138 PBX1P40424 430 aa7□□□□□ -1.29
VPS35-201ENST00000299138 IRX1P78414 480 aaPredicted RBP7□□□□□ -1.29
VPS35-201ENST00000299138 FKBP4Q02790 459 aaKnown RBP eCLIP7□□□□□ -1.29
VPS35-201ENST00000299138 MKRN3Q13064 507 aaKnown RBP7□□□□□ -1.29
VPS35-201ENST00000299138 AGBL2Q5U5Z8 902 aa7□□□□□ -1.29
VPS35-201ENST00000299138 C16orf87Q6PH81 154 aa7□□□□□ -1.29
VPS35-201ENST00000299138 BICDL1Q6ZP65 573 aa7□□□□□ -1.29
VPS35-201ENST00000299138 WDR75Q8IWA0 830 aaKnown RBP7□□□□□ -1.29
VPS35-201ENST00000299138 SLC35F6Q8N357 371 aa7□□□□□ -1.29
VPS35-201ENST00000299138 TRIML2Q8N7C3 387 aa7□□□□□ -1.29
VPS35-201ENST00000299138 FANCBQ8NB91 859 aa7□□□□□ -1.29
VPS35-201ENST00000299138 TCP11Q8WWU5 503 aa7□□□□□ -1.29
VPS35-201ENST00000299138 LARP6Q9BRS8 491 aaKnown RBP7□□□□□ -1.29
VPS35-201ENST00000299138 EXOC1Q9NV70 894 aa7□□□□□ -1.29
VPS35-201ENST00000299138 CCDC169A6NNP5 214 aa7□□□□□ -1.29
VPS35-201ENST00000299138 SERPINB6P35237 376 aa7□□□□□ -1.29
VPS35-201ENST00000299138 RASSF2P50749 326 aa7□□□□□ -1.29
VPS35-201ENST00000299138 UBXN1Q04323 297 aa7□□□□□ -1.29
VPS35-201ENST00000299138 TMEM139Q8IV31 216 aa7□□□□□ -1.29
VPS35-201ENST00000299138 TEX11Q8IYF3 940 aa7□□□□□ -1.29
VPS35-201ENST00000299138 CEP19Q96LK0 163 aa7□□□□□ -1.29
VPS35-201ENST00000299138 RAB17Q9H0T7 212 aa7□□□□□ -1.29
VPS35-201ENST00000299138 DONSONQ9NYP3 566 aa7□□□□□ -1.29
VPS35-201ENST00000299138 SERTAD1Q9UHV2 236 aa7□□□□□ -1.29
VPS35-201ENST00000299138 LZTS1Q9Y250 596 aa7□□□□□ -1.29
VPS35-201ENST00000299138 PDS5AQ29RF7 1337 aaKnown RBP7□□□□□ -1.29
VPS35-201ENST00000299138 LDHCP07864 332 aa7□□□□□ -1.29
VPS35-201ENST00000299138 SMARCA1P28370 1054 aa7□□□□□ -1.29
VPS35-201ENST00000299138 ATP6V1E1P36543 226 aa7□□□□□ -1.29
VPS35-201ENST00000299138 PUM3Q15397 648 aaKnown RBP7□□□□□ -1.29
VPS35-201ENST00000299138 NBPF20Q3BBV1 942 aa7□□□□□ -1.29
VPS35-201ENST00000299138 MICU3Q86XE3 530 aa7□□□□□ -1.29
VPS35-201ENST00000299138 LRRC59Q96AG4 307 aaKnown RBP7□□□□□ -1.29
VPS35-201ENST00000299138 CCSER1Q9C0I3 900 aa7□□□□□ -1.29
VPS35-201ENST00000299138 SLITRK6Q9H5Y7 841 aa7□□□□□ -1.29
VPS35-201ENST00000299138 TSC22D4Q9Y3Q8 395 aa7□□□□□ -1.29
VPS35-201ENST00000299138 ABLIM1O14639 778 aa6.99□□□□□ -1.29
VPS35-201ENST00000299138 CTDNEP1O95476 244 aa6.99□□□□□ -1.29
VPS35-201ENST00000299138 LMNAP02545 664 aaKnown RBP6.99□□□□□ -1.29
VPS35-201ENST00000299138 STAT6P42226 847 aa6.99□□□□□ -1.29
VPS35-201ENST00000299138 MEA1Q16626 185 aa6.99□□□□□ -1.29
VPS35-201ENST00000299138 CRELD2Q6UXH1 353 aaPredicted RBP6.99□□□□□ -1.29
VPS35-201ENST00000299138 MAIP1Q8WWC4 291 aa6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms