RNA–Protein interactions for RNA: ENST00000266546.10

CLSTN3-201, Transcript of calsyntenin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,185 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-201ENST00000266546 ECE2O60344 883 aa12.74□□□□□ -0.37
CLSTN3-201ENST00000266546 HDLBPQ00341 1268 aaKnown RBP12.74□□□□□ -0.37
CLSTN3-201ENST00000266546 C12orf60Q5U649 245 aa12.74□□□□□ -0.37
CLSTN3-201ENST00000266546 RBM43Q6ZSC3 357 aaKnown RBP12.74□□□□□ -0.37
CLSTN3-201ENST00000266546 ZNF526Q8TF50 670 aaPredicted RBP12.74□□□□□ -0.37
CLSTN3-201ENST00000266546 SYMPKQ92797 1274 aaKnown RBP12.74□□□□□ -0.37
CLSTN3-201ENST00000266546 FAM207AQ9NSI2 230 aaPredicted RBP12.74□□□□□ -0.37
CLSTN3-201ENST00000266546 GPR75-ASB3A0A0A6YYF3 556 aa12.74□□□□□ -0.37
CLSTN3-201ENST00000266546 ANKRD62A6NC57 917 aa12.74□□□□□ -0.37
CLSTN3-201ENST00000266546 CCDC84Q86UT8 332 aaPredicted RBP12.74□□□□□ -0.37
CLSTN3-201ENST00000266546 FOXP4Q8IVH2 680 aaPredicted RBP12.74□□□□□ -0.37
CLSTN3-201ENST00000266546 NAP1L4Q99733 375 aaKnown RBP12.74□□□□□ -0.37
CLSTN3-201ENST00000266546 ARHGEF10LQ9HCE6 1279 aa12.74□□□□□ -0.37
CLSTN3-201ENST00000266546 TSKSQ9UJT2 592 aa12.74□□□□□ -0.37
CLSTN3-201ENST00000266546 ATF5Q9Y2D1 282 aaPredicted RBP12.74□□□□□ -0.37
CLSTN3-201ENST00000266546 C21orf2O43822 256 aa12.74□□□□□ -0.37
CLSTN3-201ENST00000266546 MFAP3LO75121 409 aa12.74□□□□□ -0.37
CLSTN3-201ENST00000266546 MAP3K9P80192 1104 aa12.74□□□□□ -0.37
CLSTN3-201ENST00000266546 SLC9C1Q4G0N8 1177 aa12.74□□□□□ -0.37
CLSTN3-201ENST00000266546 PNMA8AQ86V59 439 aaPredicted RBP12.74□□□□□ -0.37
CLSTN3-201ENST00000266546 CCDC26Q8TAB7 109 aa12.74□□□□□ -0.37
CLSTN3-201ENST00000266546 STMN4Q9H169 189 aaPredicted RBP12.74□□□□□ -0.37
CLSTN3-201ENST00000266546 RASAL2Q9UJF2 1139 aa12.74□□□□□ -0.37
CLSTN3-201ENST00000266546 PRPF3O43395 683 aaKnown RBP12.73□□□□□ -0.37
CLSTN3-201ENST00000266546 KRT13P13646 458 aa12.73□□□□□ -0.37
CLSTN3-201ENST00000266546 CRKP46108 304 aa12.73□□□□□ -0.37
CLSTN3-201ENST00000266546 MUM1L1Q5H9M0 696 aa12.73□□□□□ -0.37
CLSTN3-201ENST00000266546 RESP18Q5W5W9 173 aa12.73□□□□□ -0.37
CLSTN3-201ENST00000266546 MCTP2Q6DN12 878 aa12.73□□□□□ -0.37
CLSTN3-201ENST00000266546 CNNM4Q6P4Q7 775 aa12.73□□□□□ -0.37
CLSTN3-201ENST00000266546 FOXP1Q9H334 677 aaPredicted RBP12.73□□□□□ -0.37
CLSTN3-201ENST00000266546 ADGRG1Q9Y653 693 aa12.73□□□□□ -0.37
CLSTN3-201ENST00000266546 VIMP08670 466 aaKnown RBP12.73□□□□□ -0.37
CLSTN3-201ENST00000266546 CDK8P49336 464 aa12.73□□□□□ -0.37
CLSTN3-201ENST00000266546 KRT79Q5XKE5 535 aa12.73□□□□□ -0.37
CLSTN3-201ENST00000266546 IGDCC4Q8TDY8 1250 aa12.73□□□□□ -0.37
CLSTN3-201ENST00000266546 CTNNBL1Q8WYA6 563 aaPredicted RBP12.73□□□□□ -0.37
CLSTN3-201ENST00000266546 IRX2Q9BZI1 471 aaPredicted RBP12.73□□□□□ -0.37
CLSTN3-201ENST00000266546 POLLQ9UGP5 575 aa12.73□□□□□ -0.37
CLSTN3-201ENST00000266546 CYP2D7A0A087X1C5 515 aa12.73□□□□□ -0.37
CLSTN3-201ENST00000266546 TRAF5O00463 557 aa12.73□□□□□ -0.37
CLSTN3-201ENST00000266546 GTPBP6O43824 516 aaPredicted RBP12.73□□□□□ -0.37
CLSTN3-201ENST00000266546 KLRK1P26718 216 aa12.73□□□□□ -0.37
CLSTN3-201ENST00000266546 SSR1P43307 286 aaKnown RBP12.73□□□□□ -0.37
CLSTN3-201ENST00000266546 PI4KBQ9UBF8 816 aa12.73□□□□□ -0.37
CLSTN3-201ENST00000266546 NUP188Q5SRE5 1749 aa12.73□□□□□ -0.37
CLSTN3-201ENST00000266546 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.73□□□□□ -0.37
CLSTN3-201ENST00000266546 NDUFA10O95299 355 aa12.73□□□□□ -0.37
CLSTN3-201ENST00000266546 RRAGAQ7L523 313 aa12.73□□□□□ -0.37
CLSTN3-201ENST00000266546 BAIAP2L1Q9UHR4 511 aa12.73□□□□□ -0.37
CLSTN3-201ENST00000266546 SCG2P13521 617 aa12.72□□□□□ -0.37
CLSTN3-201ENST00000266546 ERCC3P19447 782 aa12.72□□□□□ -0.37
CLSTN3-201ENST00000266546 LETM2Q2VYF4 491 aa12.72□□□□□ -0.37
CLSTN3-201ENST00000266546 SV2BQ7L1I2 683 aa12.72□□□□□ -0.37
CLSTN3-201ENST00000266546 BANK1Q8NDB2 785 aa12.72□□□□□ -0.37
CLSTN3-201ENST00000266546 EEF2KMTQ96G04 330 aa12.72□□□□□ -0.37
CLSTN3-201ENST00000266546 GLI3P10071 1580 aa12.72□□□□□ -0.37
CLSTN3-201ENST00000266546 SHANK3Q9BYB0 1731 aa12.72□□□□□ -0.37
CLSTN3-201ENST00000266546 BUB1BO60566 1050 aaPredicted RBP12.72□□□□□ -0.37
CLSTN3-201ENST00000266546 MRPL12P52815 198 aaKnown RBP12.72□□□□□ -0.37
CLSTN3-201ENST00000266546 TJP1Q07157 1748 aa12.72□□□□□ -0.37
CLSTN3-201ENST00000266546 NR5A1Q13285 461 aa12.72□□□□□ -0.37
CLSTN3-201ENST00000266546 ASPRV1Q53RT3 343 aa12.72□□□□□ -0.37
CLSTN3-201ENST00000266546 ARHGAP27Q6ZUM4 889 aa12.72□□□□□ -0.37
CLSTN3-201ENST00000266546 FAM163AQ96GL9 167 aaPredicted RBP12.72□□□□□ -0.37
CLSTN3-201ENST00000266546 A0A0G2JLW4 131 aa12.72□□□□□ -0.37
CLSTN3-201ENST00000266546 hCG_1984214I3L0E3 225 aa12.72□□□□□ -0.37
CLSTN3-201ENST00000266546 CEP104O60308 925 aa12.72□□□□□ -0.37
CLSTN3-201ENST00000266546 ANTXR2P58335 489 aa12.72□□□□□ -0.37
CLSTN3-201ENST00000266546 KRT71Q3SY84 523 aa12.72□□□□□ -0.37
CLSTN3-201ENST00000266546 CERKLQ49MI3 558 aaPredicted RBP12.72□□□□□ -0.37
CLSTN3-201ENST00000266546 ZNF713Q8N859 430 aaPredicted RBP12.72□□□□□ -0.37
CLSTN3-201ENST00000266546 ENGASEQ8NFI3 743 aa12.72□□□□□ -0.37
CLSTN3-201ENST00000266546 CETN2P41208 172 aa12.71□□□□□ -0.37
CLSTN3-201ENST00000266546 EPHB4P54760 987 aa12.71□□□□□ -0.37
CLSTN3-201ENST00000266546 PTGDRQ13258 359 aa12.71□□□□□ -0.37
CLSTN3-201ENST00000266546 MTF1Q14872 753 aa12.71□□□□□ -0.37
CLSTN3-201ENST00000266546 GPATCH4Q5T3I0 446 aaKnown RBP12.71□□□□□ -0.37
CLSTN3-201ENST00000266546 KRT25Q7Z3Z0 450 aa12.71□□□□□ -0.37
CLSTN3-201ENST00000266546 NHSQ6T4R5 1651 aa12.71□□□□□ -0.37
CLSTN3-201ENST00000266546 CHRNA5P30532 468 aa12.71□□□□□ -0.37
CLSTN3-201ENST00000266546 APBA1Q02410 837 aa12.71□□□□□ -0.37
CLSTN3-201ENST00000266546 TCP10Q12799 353 aa12.71□□□□□ -0.37
CLSTN3-201ENST00000266546 TXNRD3Q86VQ6 643 aa12.71□□□□□ -0.37
CLSTN3-201ENST00000266546 ENAHQ8N8S7 591 aaPredicted RBP12.71□□□□□ -0.37
CLSTN3-201ENST00000266546 IQCDQ96DY2 449 aa12.71□□□□□ -0.37
CLSTN3-201ENST00000266546 VPS33BQ9H267 617 aa12.71□□□□□ -0.37
CLSTN3-201ENST00000266546 TMEM51Q9NW97 253 aa12.71□□□□□ -0.37
CLSTN3-201ENST00000266546 DAGLAQ9Y4D2 1042 aa12.71□□□□□ -0.37
CLSTN3-201ENST00000266546 MMP1P03956 469 aa12.71□□□□□ -0.38
CLSTN3-201ENST00000266546 RPN1P04843 607 aaKnown RBP12.71□□□□□ -0.38
CLSTN3-201ENST00000266546 VSNL1P62760 191 aa12.71□□□□□ -0.38
CLSTN3-201ENST00000266546 FKBP1AP62942 108 aaKnown RBP12.71□□□□□ -0.38
CLSTN3-201ENST00000266546 IFT88Q13099 833 aa12.71□□□□□ -0.38
CLSTN3-201ENST00000266546 CACNA2D3Q8IZS8 1091 aa12.71□□□□□ -0.38
CLSTN3-201ENST00000266546 ANKRD13CQ8N6S4 541 aa12.71□□□□□ -0.38
CLSTN3-201ENST00000266546 MTRF1LQ9UGC7 380 aaKnown RBP12.71□□□□□ -0.38
CLSTN3-201ENST00000266546 FAM169AQ9Y6X4 670 aa12.71□□□□□ -0.38
CLSTN3-201ENST00000266546 TBC1D8O95759 1140 aa12.7□□□□□ -0.38
CLSTN3-201ENST00000266546 TTLL1O95922 423 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms