RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 CDC25AP30304 524 aa11.76□□□□□ -0.53
CD44-201ENST00000263398 PARD6BQ9BYG5 372 aa11.76□□□□□ -0.53
CD44-201ENST00000263398 ANKARQ7Z5J8 1434 aa11.75□□□□□ -0.53
CD44-201ENST00000263398 RPAP1Q9BWH6 1393 aaPredicted RBP11.75□□□□□ -0.53
CD44-201ENST00000263398 SOWAHDA6NJG2 315 aa11.75□□□□□ -0.53
CD44-201ENST00000263398 HEXIM1O94992 359 aaKnown RBP11.75□□□□□ -0.53
CD44-201ENST00000263398 GAP43P17677 238 aa11.75□□□□□ -0.53
CD44-201ENST00000263398 POLR2BP30876 1174 aaKnown RBP11.75□□□□□ -0.53
CD44-201ENST00000263398 LIG3P49916 1009 aa11.75□□□□□ -0.53
CD44-201ENST00000263398 BPIFB4P59827 614 aa11.75□□□□□ -0.53
CD44-201ENST00000263398 NAA35Q5VZE5 725 aa11.75□□□□□ -0.53
CD44-201ENST00000263398 CFAP57Q96MR6 1250 aa11.75□□□□□ -0.53
CD44-201ENST00000263398 STRBPQ96SI9 672 aaKnown RBP11.75□□□□□ -0.53
CD44-201ENST00000263398 HINFPQ9BQA5 517 aa11.75□□□□□ -0.53
CD44-201ENST00000263398 DDX23Q9BUQ8 820 aaKnown RBP11.75□□□□□ -0.53
CD44-201ENST00000263398 THAP9Q9H5L6 903 aa11.75□□□□□ -0.53
CD44-201ENST00000263398 GPHNQ9NQX3 736 aaPredicted RBP11.75□□□□□ -0.53
CD44-201ENST00000263398 FAM114A2Q9NRY5 505 aa11.75□□□□□ -0.53
CD44-201ENST00000263398 TMEM94Q12767 1356 aa11.75□□□□□ -0.53
CD44-201ENST00000263398 GIPC1O14908 333 aa11.75□□□□□ -0.53
CD44-201ENST00000263398 TTLL1O95922 423 aa11.75□□□□□ -0.53
CD44-201ENST00000263398 PTPREP23469 700 aa11.75□□□□□ -0.53
CD44-201ENST00000263398 CCT5P48643 541 aa11.75□□□□□ -0.53
CD44-201ENST00000263398 ABCB5Q2M3G0 1257 aa11.75□□□□□ -0.53
CD44-201ENST00000263398 ARHGEF16Q5VV41 709 aa11.75□□□□□ -0.53
CD44-201ENST00000263398 CCDC117Q8IWD4 279 aaPredicted RBP11.75□□□□□ -0.53
CD44-201ENST00000263398 ZBTB8OSQ8IWT0 167 aa11.75□□□□□ -0.53
CD44-201ENST00000263398 RNF10Q8N5U6 811 aaKnown RBP11.75□□□□□ -0.53
CD44-201ENST00000263398 TTLL11Q8NHH1 800 aa11.75□□□□□ -0.53
CD44-201ENST00000263398 MAGOHBQ96A72 148 aaKnown RBP11.75□□□□□ -0.53
CD44-201ENST00000263398 PAGE5Q96GU1 130 aa11.75□□□□□ -0.53
CD44-201ENST00000263398 THRAP3Q9Y2W1 955 aaKnown RBP11.75□□□□□ -0.53
CD44-201ENST00000263398 FAM170AA1A519 330 aa11.75□□□□□ -0.53
CD44-201ENST00000263398 MYO1FO00160 1098 aa11.75□□□□□ -0.53
CD44-201ENST00000263398 AFPP02771 609 aaKnown RBP11.75□□□□□ -0.53
CD44-201ENST00000263398 IGKV5-2P06315 115 aa11.75□□□□□ -0.53
CD44-201ENST00000263398 DLATP10515 647 aaKnown RBP11.75□□□□□ -0.53
CD44-201ENST00000263398 NSFP46459 744 aaKnown RBP11.75□□□□□ -0.53
CD44-201ENST00000263398 CLCN6P51797 869 aa11.75□□□□□ -0.53
CD44-201ENST00000263398 RASGRF1Q13972 1273 aa11.75□□□□□ -0.53
CD44-201ENST00000263398 KCTD16Q68DU8 428 aa11.75□□□□□ -0.53
CD44-201ENST00000263398 PHLDB2Q86SQ0 1253 aa11.75□□□□□ -0.53
CD44-201ENST00000263398 CCDC13Q8IYE1 715 aa11.75□□□□□ -0.53
CD44-201ENST00000263398 EPSTI1Q96J88 318 aa11.75□□□□□ -0.53
CD44-201ENST00000263398 SERPINB13Q9UIV8 391 aa11.75□□□□□ -0.53
CD44-201ENST00000263398 GLI2P10070 1586 aa11.75□□□□□ -0.53
CD44-201ENST00000263398 HIP1RO75146 1068 aa11.74□□□□□ -0.53
CD44-201ENST00000263398 CA8P35219 290 aa11.74□□□□□ -0.53
CD44-201ENST00000263398 PSMC2P35998 433 aaKnown RBP11.74□□□□□ -0.53
CD44-201ENST00000263398 SARNPP82979 210 aaKnown RBP11.74□□□□□ -0.53
CD44-201ENST00000263398 PTK2Q05397 1052 aa11.74□□□□□ -0.53
CD44-201ENST00000263398 PPP2R5DQ14738 602 aa11.74□□□□□ -0.53
CD44-201ENST00000263398 LRCH2Q5VUJ6 765 aa11.74□□□□□ -0.53
CD44-201ENST00000263398 PDLIM2Q96JY6 352 aa11.74□□□□□ -0.53
CD44-201ENST00000263398 RILPQ96NA2 401 aa11.74□□□□□ -0.53
CD44-201ENST00000263398 MIS12Q9H081 205 aa11.74□□□□□ -0.53
CD44-201ENST00000263398 VCXQ9H320 206 aa11.74□□□□□ -0.53
CD44-201ENST00000263398 EPB41L5Q9HCM4 733 aa11.74□□□□□ -0.53
CD44-201ENST00000263398 PIH1D3Q9NQM4 214 aaKnown RBP11.74□□□□□ -0.53
CD44-201ENST00000263398 USP21Q9UK80 565 aa11.74□□□□□ -0.53
CD44-201ENST00000263398 DAAM1Q9Y4D1 1078 aa11.74□□□□□ -0.53
CD44-201ENST00000263398 PPRC1Q5VV67 1664 aaKnown RBP11.74□□□□□ -0.53
CD44-201ENST00000263398 ARHGAP31Q2M1Z3 1444 aa11.74□□□□□ -0.53
CD44-201ENST00000263398 CRCPO75575 148 aa11.74□□□□□ -0.53
CD44-201ENST00000263398 ATF7P17544 494 aaPredicted RBP11.74□□□□□ -0.53
CD44-201ENST00000263398 DMTNQ08495 405 aa11.74□□□□□ -0.53
CD44-201ENST00000263398 DMP1Q13316 513 aaPredicted RBP11.74□□□□□ -0.53
CD44-201ENST00000263398 SEPT2Q15019 361 aa11.74□□□□□ -0.53
CD44-201ENST00000263398 LRRC41Q15345 812 aa11.74□□□□□ -0.53
CD44-201ENST00000263398 FAM186BQ8IYM0 893 aa11.74□□□□□ -0.53
CD44-201ENST00000263398 UHMK1Q8TAS1 419 aaKnown RBP11.74□□□□□ -0.53
CD44-201ENST00000263398 EXOC4Q96A65 974 aa11.74□□□□□ -0.53
CD44-201ENST00000263398 PGBD1Q96JS3 809 aa11.74□□□□□ -0.53
CD44-201ENST00000263398 SETD1BQ9UPS6 1966 aaKnown RBP11.74□□□□□ -0.53
CD44-201ENST00000263398 PGRMC1O00264 195 aaKnown RBP11.74□□□□□ -0.53
CD44-201ENST00000263398 ATF2P15336 505 aa11.74□□□□□ -0.53
CD44-201ENST00000263398 PSMD2Q13200 908 aa11.74□□□□□ -0.53
CD44-201ENST00000263398 DOK7Q18PE1 504 aa11.74□□□□□ -0.53
CD44-201ENST00000263398 NT5C1BQ96P26 610 aa11.74□□□□□ -0.53
CD44-201ENST00000263398 ZNF148Q9UQR1 794 aa11.74□□□□□ -0.53
CD44-201ENST00000263398 MAN1A1P33908 653 aa11.74□□□□□ -0.53
CD44-201ENST00000263398 MYL7Q01449 175 aa11.74□□□□□ -0.53
CD44-201ENST00000263398 MESDQ14696 234 aa11.74□□□□□ -0.53
CD44-201ENST00000263398 FLAD1Q8NFF5 587 aa11.74□□□□□ -0.53
CD44-201ENST00000263398 KANSL2Q9H9L4 492 aa11.74□□□□□ -0.53
CD44-201ENST00000263398 AS3MTQ9HBK9 375 aa11.74□□□□□ -0.53
CD44-201ENST00000263398 FAN1Q9Y2M0 1017 aa11.74□□□□□ -0.53
CD44-201ENST00000263398 EPHA10Q5JZY3 1008 aa11.73□□□□□ -0.53
CD44-201ENST00000263398 RESP18Q5W5W9 173 aa11.73□□□□□ -0.53
CD44-201ENST00000263398 DGKHQ86XP1 1220 aa11.73□□□□□ -0.53
CD44-201ENST00000263398 PIGSQ96S52 555 aa11.73□□□□□ -0.53
CD44-201ENST00000263398 WDR11Q9BZH6 1224 aa11.73□□□□□ -0.53
CD44-201ENST00000263398 STK38LQ9Y2H1 464 aa11.73□□□□□ -0.53
CD44-201ENST00000263398 ZMYND10O75800 440 aa11.73□□□□□ -0.53
CD44-201ENST00000263398 RNF8O76064 485 aa11.73□□□□□ -0.53
CD44-201ENST00000263398 MAP2K2P36507 400 aa11.73□□□□□ -0.53
CD44-201ENST00000263398 MFAP3P55082 362 aa11.73□□□□□ -0.53
CD44-201ENST00000263398 SLC17A8Q8NDX2 589 aa11.73□□□□□ -0.53
CD44-201ENST00000263398 RAB3IPQ96QF0 476 aaPredicted RBP11.73□□□□□ -0.53
CD44-201ENST00000263398 INTS9Q9NV88 658 aaKnown RBP11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms