RNA–Protein interactions for RNA: ENST00000261517.9

VPS13C-202, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 13,400 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-202ENST00000261517 GSDMBQ8TAX9 411 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 LPAR1Q92633 364 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 PPP1R9BQ96SB3 815 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 FAN1Q9Y2M0 1017 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 VIRMAQ69YN4 1812 aaKnown RBP4.72□□□□□ -1.65
VPS13C-202ENST00000261517 ZNF569Q5MCW4 686 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 AFAP1L1Q8TED9 768 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 CDKL2Q92772 493 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 NFE2L3Q9Y4A8 694 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 SAR1BQ9Y6B6 198 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 PFASO15067 1338 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 GAS2O43903 313 aaKnown RBP4.72□□□□□ -1.65
VPS13C-202ENST00000261517 MYBL1P10243 752 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 DALRD3Q5D0E6 543 aaKnown RBP4.72□□□□□ -1.65
VPS13C-202ENST00000261517 INTS8Q75QN2 995 aaKnown RBP4.72□□□□□ -1.65
VPS13C-202ENST00000261517 MIGA2Q7L4E1 593 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 RDM1Q8NG50 284 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 SMCR8Q8TEV9 937 aaPredicted RBP4.72□□□□□ -1.65
VPS13C-202ENST00000261517 PPP4R1Q8TF05 950 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 SLC7A3Q8WY07 619 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 MRPL40Q9NQ50 206 aaKnown RBP4.72□□□□□ -1.65
VPS13C-202ENST00000261517 RAB20Q9NX57 234 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 HOXC10Q9NYD6 342 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 RCOR1Q9UKL0 485 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 STRIP2Q9ULQ0 834 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 MAFGO15525 162 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 APBA3O96018 575 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 ZNF658Q5TYW1 1059 aaPredicted RBP4.72□□□□□ -1.65
VPS13C-202ENST00000261517 GPBP1Q86WP2 473 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 MB21D1Q8N884 522 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 MYRIPQ8NFW9 859 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 RABGGTAQ92696 567 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 ANKRD36BP1Q96IX9 119 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 GOLGA8JA6NMD2 632 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 KCNJ18B7U540 433 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 TBXAS1P24557 533 aaPredicted RBP4.72□□□□□ -1.65
VPS13C-202ENST00000261517 ZAP70P43403 619 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 USP11P51784 963 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 KCNJ12Q14500 433 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 MAN2A1Q16706 1144 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 PANK4Q9NVE7 773 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 EHD2Q9NZN4 543 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 IQCA1LA6NCM1 817 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 GGPS1O95749 300 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 SLFN14P0C7P3 912 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 PLCB3Q01970 1234 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 PTK2Q05397 1052 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 DCAF17Q5H9S7 520 aaPredicted RBP4.72□□□□□ -1.65
VPS13C-202ENST00000261517 TTC25Q96NG3 672 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 SCINQ9Y6U3 715 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 TNKSO95271 1327 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 HVCN1Q96D96 273 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 BTDP43251 543 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 TSNAXIP1Q2TAA8 658 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 METTL23Q86XA0 190 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 CPLX3Q8WVH0 158 aa4.72□□□□□ -1.65
VPS13C-202ENST00000261517 SRPRBQ9Y5M8 271 aaKnown RBP4.72□□□□□ -1.65
VPS13C-202ENST00000261517 PVALEFA0A1B0GWK0 134 aa4.71□□□□□ -1.65
VPS13C-202ENST00000261517 SH2B2O14492 632 aaPredicted RBP4.71□□□□□ -1.65
VPS13C-202ENST00000261517 RPN1P04843 607 aaKnown RBP4.71□□□□□ -1.65
VPS13C-202ENST00000261517 LIG4P49917 911 aa4.71□□□□□ -1.65
VPS13C-202ENST00000261517 CUL1Q13616 776 aa4.71□□□□□ -1.65
VPS13C-202ENST00000261517 ZNF174Q15697 407 aa4.71□□□□□ -1.65
VPS13C-202ENST00000261517 CPLX4Q7Z7G2 160 aa4.71□□□□□ -1.65
VPS13C-202ENST00000261517 NDUFAF2Q8N183 169 aa4.71□□□□□ -1.65
VPS13C-202ENST00000261517 TTLL6Q8N841 843 aa4.71□□□□□ -1.65
VPS13C-202ENST00000261517 ENOX1Q8TC92 643 aaKnown RBP4.71□□□□□ -1.65
VPS13C-202ENST00000261517 WHAMMQ8TF30 809 aa4.71□□□□□ -1.65
VPS13C-202ENST00000261517 AP5M1Q9H0R1 490 aa4.71□□□□□ -1.65
VPS13C-202ENST00000261517 LGR6Q9HBX8 967 aa4.71□□□□□ -1.65
VPS13C-202ENST00000261517 MIF4GDA9UHW6 222 aaKnown RBP4.71□□□□□ -1.65
VPS13C-202ENST00000261517 VPS72Q15906 364 aa4.71□□□□□ -1.65
VPS13C-202ENST00000261517 ARMCX2Q7L311 632 aa4.71□□□□□ -1.65
VPS13C-202ENST00000261517 FASTKD5Q7L8L6 764 aaKnown RBP4.71□□□□□ -1.65
VPS13C-202ENST00000261517 OTUD6BQ8N6M0 293 aa4.71□□□□□ -1.65
VPS13C-202ENST00000261517 TGFBRAP1Q8WUH2 860 aa4.71□□□□□ -1.65
VPS13C-202ENST00000261517 FAM43BQ6ZT52 329 aaPredicted RBP4.71□□□□□ -1.66
VPS13C-202ENST00000261517 PCGF5Q86SE9 256 aa4.71□□□□□ -1.66
VPS13C-202ENST00000261517 BCCIPQ9P287 314 aaKnown RBP eCLIP4.71□□□□□ -1.66
VPS13C-202ENST00000261517 PNMA6EA0A0J9YXQ4 647 aa4.71□□□□□ -1.66
VPS13C-202ENST00000261517 TBX3O15119 743 aa4.71□□□□□ -1.66
VPS13C-202ENST00000261517 FGAP02671 866 aa4.71□□□□□ -1.66
VPS13C-202ENST00000261517 TROVE2P10155 538 aaKnown RBP eCLIP4.71□□□□□ -1.66
VPS13C-202ENST00000261517 KRT76Q01546 638 aa4.71□□□□□ -1.66
VPS13C-202ENST00000261517 FAM26FQ5R3K3 315 aa4.71□□□□□ -1.66
VPS13C-202ENST00000261517 SYDE2Q5VT97 1194 aa4.71□□□□□ -1.66
VPS13C-202ENST00000261517 APOA5Q6Q788 366 aa4.71□□□□□ -1.66
VPS13C-202ENST00000261517 SARM1Q6SZW1 724 aa4.71□□□□□ -1.66
VPS13C-202ENST00000261517 RHOT2Q8IXI1 618 aa4.71□□□□□ -1.66
VPS13C-202ENST00000261517 LARP4BQ92615 738 aaKnown RBP4.71□□□□□ -1.66
VPS13C-202ENST00000261517 DAPK3O43293 454 aa4.71□□□□□ -1.66
VPS13C-202ENST00000261517 MMP1P03956 469 aa4.71□□□□□ -1.66
VPS13C-202ENST00000261517 SLFN13Q68D06 897 aa4.71□□□□□ -1.66
VPS13C-202ENST00000261517 RNF10Q8N5U6 811 aaKnown RBP4.71□□□□□ -1.66
VPS13C-202ENST00000261517 TTC13Q8NBP0 860 aa4.71□□□□□ -1.66
VPS13C-202ENST00000261517 NT5C1BQ96P26 610 aa4.71□□□□□ -1.66
VPS13C-202ENST00000261517 RASSF4Q9H2L5 321 aa4.71□□□□□ -1.66
VPS13C-202ENST00000261517 GPCPD1Q9NPB8 672 aa4.71□□□□□ -1.66
VPS13C-202ENST00000261517 TLR3O15455 904 aaKnown RBP4.71□□□□□ -1.66
VPS13C-202ENST00000261517 SGMS1Q86VZ5 419 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms