RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 SRGNP10124 158 aa23.75■■□□□ 1.39
TRIM28-201ENST00000253024 CAPN2P17655 700 aa23.75■■□□□ 1.39
TRIM28-201ENST00000253024 GRB10Q13322 594 aa23.75■■□□□ 1.39
TRIM28-201ENST00000253024 TDRD12Q587J7 1177 aaKnown RBP23.75■■□□□ 1.39
TRIM28-201ENST00000253024 PCDHAC2Q9Y5I4 1007 aa23.75■■□□□ 1.39
TRIM28-201ENST00000253024 AKR1B10O60218 316 aa23.74■■□□□ 1.39
TRIM28-201ENST00000253024 CT47A1Q5JQC4 288 aaPredicted RBP23.74■■□□□ 1.39
TRIM28-201ENST00000253024 PRR5LQ6MZQ0 368 aa23.74■■□□□ 1.39
TRIM28-201ENST00000253024 SV2BQ7L1I2 683 aa23.74■■□□□ 1.39
TRIM28-201ENST00000253024 COG1Q8WTW3 980 aa23.74■■□□□ 1.39
TRIM28-201ENST00000253024 CCDC47Q96A33 483 aaKnown RBP23.74■■□□□ 1.39
TRIM28-201ENST00000253024 PYM1Q9BRP8 204 aaKnown RBP23.74■■□□□ 1.39
TRIM28-201ENST00000253024 THAP9Q9H5L6 903 aa23.74■■□□□ 1.39
TRIM28-201ENST00000253024 DNAJC7Q99615 494 aa23.74■■□□□ 1.39
TRIM28-201ENST00000253024 SH3GLB2Q9NR46 395 aa23.74■■□□□ 1.39
TRIM28-201ENST00000253024 USP17L15C9J2P7 530 aa23.73■■□□□ 1.39
TRIM28-201ENST00000253024 USP17L13C9JLJ4 530 aa23.73■■□□□ 1.39
TRIM28-201ENST00000253024 USP17L11C9JVI0 530 aa23.73■■□□□ 1.39
TRIM28-201ENST00000253024 USP17L18D6R9N7 530 aa23.73■■□□□ 1.39
TRIM28-201ENST00000253024 USP17L22D6RA61 530 aa23.73■■□□□ 1.39
TRIM28-201ENST00000253024 USP17L17D6RBQ6 530 aa23.73■■□□□ 1.39
TRIM28-201ENST00000253024 USP17L19D6RCP7 530 aa23.73■■□□□ 1.39
TRIM28-201ENST00000253024 USP17L20D6RJB6 530 aa23.73■■□□□ 1.39
TRIM28-201ENST00000253024 USP17L24Q0WX57 530 aa23.73■■□□□ 1.39
TRIM28-201ENST00000253024 TRIM14Q14142 442 aa23.73■■□□□ 1.39
TRIM28-201ENST00000253024 DNAJC21Q5F1R6 531 aaKnown RBP23.73■■□□□ 1.39
TRIM28-201ENST00000253024 NFRKBQ6P4R8 1299 aa23.73■■□□□ 1.39
TRIM28-201ENST00000253024 USP17L6PQ6QN14 398 aa23.73■■□□□ 1.39
TRIM28-201ENST00000253024 KRT25Q7Z3Z0 450 aa23.73■■□□□ 1.39
TRIM28-201ENST00000253024 BLOC1S4Q9NUP1 217 aa23.73■■□□□ 1.39
TRIM28-201ENST00000253024 KRT86O43790 486 aa23.73■■□□□ 1.39
TRIM28-201ENST00000253024 GNA11P29992 359 aa23.73■■□□□ 1.39
TRIM28-201ENST00000253024 EIF4A3P38919 411 aaKnown RBP23.73■■□□□ 1.39
TRIM28-201ENST00000253024 GFPT1Q06210 699 aaPredicted RBP23.73■■□□□ 1.39
TRIM28-201ENST00000253024 ZSCAN26Q16670 478 aa23.73■■□□□ 1.39
TRIM28-201ENST00000253024 WHAMMP3Q1A5X7 153 aa23.73■■□□□ 1.39
TRIM28-201ENST00000253024 HAUS4Q9H6D7 363 aa23.73■■□□□ 1.39
TRIM28-201ENST00000253024 HSP90B2PQ58FF3 399 aa23.73■■□□□ 1.39
TRIM28-201ENST00000253024 GGA1Q9UJY5 639 aa23.73■■□□□ 1.39
TRIM28-201ENST00000253024 LRRC53A6NM62 1247 aa23.72■■□□□ 1.39
TRIM28-201ENST00000253024 PDHBP11177 359 aa23.72■■□□□ 1.39
TRIM28-201ENST00000253024 CYLC1P35663 651 aaPredicted RBP23.72■■□□□ 1.39
TRIM28-201ENST00000253024 STAT3P40763 770 aa23.72■■□□□ 1.39
TRIM28-201ENST00000253024 GSTO1P78417 241 aa23.72■■□□□ 1.39
TRIM28-201ENST00000253024 KIF5AQ12840 1032 aa23.72■■□□□ 1.39
TRIM28-201ENST00000253024 TTC19Q6DKK2 380 aaPredicted RBP23.72■■□□□ 1.39
TRIM28-201ENST00000253024 TRAPPC11Q7Z392 1133 aa23.72■■□□□ 1.39
TRIM28-201ENST00000253024 DDX12PQ92771 950 aa23.72■■□□□ 1.39
TRIM28-201ENST00000253024 PNMA5Q96PV4 448 aa23.72■■□□□ 1.39
TRIM28-201ENST00000253024 DDX4Q9NQI0 724 aaKnown RBP23.72■■□□□ 1.39
TRIM28-201ENST00000253024 LRRC4BQ9NT99 713 aa23.72■■□□□ 1.39
TRIM28-201ENST00000253024 LCMT1Q9UIC8 334 aa23.72■■□□□ 1.39
TRIM28-201ENST00000253024 MAP2K7O14733 419 aa23.72■■□□□ 1.39
TRIM28-201ENST00000253024 LDHCP07864 332 aa23.72■■□□□ 1.39
TRIM28-201ENST00000253024 KCNB1Q14721 858 aa23.72■■□□□ 1.39
TRIM28-201ENST00000253024 SPA17Q15506 151 aa23.72■■□□□ 1.39
TRIM28-201ENST00000253024 LARP4BQ92615 738 aaKnown RBP23.72■■□□□ 1.39
TRIM28-201ENST00000253024 IFIH1Q9BYX4 1025 aaKnown RBP23.72■■□□□ 1.39
TRIM28-201ENST00000253024 ARHGAP20Q9P2F6 1191 aa23.72■■□□□ 1.39
TRIM28-201ENST00000253024 UBXN6Q9BZV1 441 aa23.71■■□□□ 1.39
TRIM28-201ENST00000253024 PACSIN2Q9UNF0 486 aaPredicted RBP23.71■■□□□ 1.39
TRIM28-201ENST00000253024 CNTNAP4Q9C0A0 1308 aa23.71■■□□□ 1.39
TRIM28-201ENST00000253024 E9PMD0 336 aa23.71■■□□□ 1.39
TRIM28-201ENST00000253024 RASSF7Q02833 373 aa23.71■■□□□ 1.39
TRIM28-201ENST00000253024 CACNA2D4Q7Z3S7 1137 aa23.71■■□□□ 1.39
TRIM28-201ENST00000253024 PROCA1Q8NCQ7 364 aaPredicted RBP23.71■■□□□ 1.39
TRIM28-201ENST00000253024 MSANTD4Q8NCY6 345 aa23.71■■□□□ 1.39
TRIM28-201ENST00000253024 USP17L10C9JJH3 530 aa23.7■■□□□ 1.39
TRIM28-201ENST00000253024 RHBDL3P58872 404 aa23.7■■□□□ 1.39
TRIM28-201ENST00000253024 DHTKD1Q96HY7 919 aaPredicted RBP23.7■■□□□ 1.39
TRIM28-201ENST00000253024 MS4A14Q96JA4 679 aa23.7■■□□□ 1.39
TRIM28-201ENST00000253024 NDST4Q9H3R1 872 aa23.7■■□□□ 1.39
TRIM28-201ENST00000253024 SALL4Q9UJQ4 1053 aa23.7■■□□□ 1.39
TRIM28-201ENST00000253024 IRS2Q9Y4H2 1338 aa23.7■■□□□ 1.38
TRIM28-201ENST00000253024 GPS2Q13227 327 aa23.7■■□□□ 1.38
TRIM28-201ENST00000253024 C16orf86Q6ZW13 317 aa23.7■■□□□ 1.38
TRIM28-201ENST00000253024 NEDD1Q8NHV4 660 aa23.7■■□□□ 1.38
TRIM28-201ENST00000253024 BCAS3Q9H6U6 928 aa23.7■■□□□ 1.38
TRIM28-201ENST00000253024 MYH10P35580 1976 aa23.7■■□□□ 1.38
TRIM28-201ENST00000253024 TRAF5O00463 557 aa23.7■■□□□ 1.38
TRIM28-201ENST00000253024 MEIS1O00470 390 aa23.7■■□□□ 1.38
TRIM28-201ENST00000253024 KRT83P78385 493 aa23.7■■□□□ 1.38
TRIM28-201ENST00000253024 BARGINQ6ZT62 677 aa23.7■■□□□ 1.38
TRIM28-201ENST00000253024 SECISBP2LQ93073 1101 aaKnown RBP23.7■■□□□ 1.38
TRIM28-201ENST00000253024 SCN7AQ01118 1682 aa23.69■■□□□ 1.38
TRIM28-201ENST00000253024 FECHP22830 423 aa23.69■■□□□ 1.38
TRIM28-201ENST00000253024 ADCY7P51828 1080 aa23.69■■□□□ 1.38
TRIM28-201ENST00000253024 TTYH3Q9C0H2 523 aa23.69■■□□□ 1.38
TRIM28-201ENST00000253024 FAM204AQ9H8W3 233 aa23.69■■□□□ 1.38
TRIM28-201ENST00000253024 KCNQ5Q9NR82 932 aa23.69■■□□□ 1.38
TRIM28-201ENST00000253024 LEMD3Q9Y2U8 911 aa23.69■■□□□ 1.38
TRIM28-201ENST00000253024 TRIM66O15016 1216 aa23.69■■□□□ 1.38
TRIM28-201ENST00000253024 EDIL3O43854 480 aa23.69■■□□□ 1.38
TRIM28-201ENST00000253024 PPP1R11O60927 126 aaPredicted RBP23.69■■□□□ 1.38
TRIM28-201ENST00000253024 ZBED6P86452 979 aa23.69■■□□□ 1.38
TRIM28-201ENST00000253024 GOLPH3Q9H4A6 298 aa23.69■■□□□ 1.38
TRIM28-201ENST00000253024 RAB21Q9UL25 225 aa23.69■■□□□ 1.38
TRIM28-201ENST00000253024 SNED1Q8TER0 1413 aa23.69■■□□□ 1.38
TRIM28-201ENST00000253024 BICDL2A1A5D9 508 aa23.68■■□□□ 1.38
TRIM28-201ENST00000253024 CNNM4Q6P4Q7 775 aa23.68■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms