RNA–Protein interactions for RNA: ENST00000641733.1

CASC19-255, Transcript of cancer susceptibility 19, human

BASIC

Gene CASC19, Length 1,385 nt, Biotype lincRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CASC19-255	ENST00000641733	MICALL2	Q8IY33	904 aa		11.86	□□□□□ -0.51
CASC19-255	ENST00000641733	SCUBE2	Q9NQ36	999 aa		11.86	□□□□□ -0.51
CASC19-255	ENST00000641733	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	11.85	□□□□□ -0.51
CASC19-255	ENST00000641733	ARX	Q96QS3	562 aa		11.83	□□□□□ -0.52
CASC19-255	ENST00000641733	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	11.82	□□□□□ -0.52
CASC19-255	ENST00000641733	POTEJ	P0CG39	1038 aa		11.81	□□□□□ -0.52
CASC19-255	ENST00000641733	KDM2A	Q9Y2K7	1162 aa		11.77	□□□□□ -0.53
CASC19-255	ENST00000641733	OTUD5	Q96G74	571 aa		11.73	□□□□□ -0.53
CASC19-255	ENST00000641733	TULP1	O00294	542 aa	Predicted RBP	11.71	□□□□□ -0.53
CASC19-255	ENST00000641733	SLAIN1	Q8ND83	568 aa		11.71	□□□□□ -0.53
CASC19-255	ENST00000641733	TIMELESS	Q9UNS1	1208 aa		11.71	□□□□□ -0.53
CASC19-255	ENST00000641733	TMC2	Q8TDI7	906 aa		11.7	□□□□□ -0.54
CASC19-255	ENST00000641733	PDE4A	P27815	886 aa		11.67	□□□□□ -0.54
CASC19-255	ENST00000641733	GTF3C3	Q9Y5Q9	886 aa		11.67	□□□□□ -0.54
CASC19-255	ENST00000641733	NBR1	Q14596	966 aa		11.66	□□□□□ -0.54
CASC19-255	ENST00000641733	TSHZ2	Q9NRE2	1034 aa		11.66	□□□□□ -0.54
CASC19-255	ENST00000641733	TMEM92	Q6UXU6	159 aa		11.65	□□□□□ -0.55
CASC19-255	ENST00000641733	CRISPLD2	Q9H0B8	497 aa		11.65	□□□□□ -0.55
CASC19-255	ENST00000641733	GPHN	Q9NQX3	736 aa	Predicted RBP	11.65	□□□□□ -0.55
CASC19-255	ENST00000641733	C2orf72	A6NCS6	295 aa		11.64	□□□□□ -0.55
CASC19-255	ENST00000641733	CADPS2	Q86UW7	1296 aa		11.64	□□□□□ -0.55
CASC19-255	ENST00000641733	KIF3C	O14782	793 aa		11.63	□□□□□ -0.55
CASC19-255	ENST00000641733	NCKAP5L	Q9HCH0	1330 aa		11.61	□□□□□ -0.55
CASC19-255	ENST00000641733	SNPH	O15079	494 aa		11.59	□□□□□ -0.55
CASC19-255	ENST00000641733	LARP6	Q9BRS8	491 aa	Known RBP	11.59	□□□□□ -0.55
CASC19-255	ENST00000641733	FOXK1	P85037	733 aa		11.58	□□□□□ -0.56
CASC19-255	ENST00000641733	DDX27	Q96GQ7	796 aa	Known RBP	11.58	□□□□□ -0.56
CASC19-255	ENST00000641733	MFSD10	Q14728	455 aa		11.56	□□□□□ -0.56
CASC19-255	ENST00000641733	WDR70	Q9NW82	654 aa		11.56	□□□□□ -0.56
CASC19-255	ENST00000641733	PPP1R15B	Q5SWA1	713 aa		11.55	□□□□□ -0.56
CASC19-255	ENST00000641733	DSG2	Q14126	1118 aa		11.54	□□□□□ -0.56
CASC19-255	ENST00000641733	HOMEZ	Q8IX15	550 aa		11.54	□□□□□ -0.56
CASC19-255	ENST00000641733	PLPP6	Q8IY26	295 aa		11.54	□□□□□ -0.56
CASC19-255	ENST00000641733	DOK7	Q18PE1	504 aa		11.53	□□□□□ -0.56
CASC19-255	ENST00000641733	RIMBP2	O15034	1052 aa		11.51	□□□□□ -0.57
CASC19-255	ENST00000641733	SLC34A2	O95436	690 aa		11.47	□□□□□ -0.57
CASC19-255	ENST00000641733	ZNF710	Q8N1W2	664 aa		11.47	□□□□□ -0.57
CASC19-255	ENST00000641733	HOXB3	P14651	431 aa	Predicted RBP	11.46	□□□□□ -0.57
CASC19-255	ENST00000641733	ZSWIM6	Q9HCJ5	1215 aa		11.45	□□□□□ -0.58
CASC19-255	ENST00000641733	E2F4	Q16254	413 aa		11.43	□□□□□ -0.58
CASC19-255	ENST00000641733	CAMK2B	Q13554	666 aa		11.42	□□□□□ -0.58
CASC19-255	ENST00000641733	TMEM132A	Q24JP5	1023 aa		11.42	□□□□□ -0.58
CASC19-255	ENST00000641733	TBC1D12	O60347	775 aa		11.41	□□□□□ -0.58
CASC19-255	ENST00000641733	P3H3	Q8IVL6	736 aa		11.41	□□□□□ -0.58
CASC19-255	ENST00000641733	PTCD2	Q8WV60	388 aa	Known RBP	11.41	□□□□□ -0.58
CASC19-255	ENST00000641733	FAM163A	Q96GL9	167 aa	Predicted RBP	11.4	□□□□□ -0.59
CASC19-255	ENST00000641733	C14orf37	Q86TY3	774 aa		11.38	□□□□□ -0.59
CASC19-255	ENST00000641733	OXER1	Q8TDS5	423 aa		11.38	□□□□□ -0.59
CASC19-255	ENST00000641733	UPF1	Q92900	1129 aa	Known RBP eCLIP	11.37	□□□□□ -0.59
CASC19-255	ENST00000641733	PCDHGA4	Q9Y5G9	962 aa		11.37	□□□□□ -0.59
CASC19-255	ENST00000641733	ST18	O60284	1047 aa		11.36	□□□□□ -0.59
CASC19-255	ENST00000641733	EMILIN3	Q9NT22	766 aa		11.36	□□□□□ -0.59
CASC19-255	ENST00000641733	ZNF316	A6NFI3	1004 aa	Predicted RBP	11.35	□□□□□ -0.59
CASC19-255	ENST00000641733	HOXB1	P14653	301 aa	Predicted RBP	11.35	□□□□□ -0.59
CASC19-255	ENST00000641733	MAP3K9	P80192	1104 aa		11.35	□□□□□ -0.59
CASC19-255	ENST00000641733	GPR153	Q6NV75	609 aa		11.34	□□□□□ -0.59
CASC19-255	ENST00000641733	ARSI	Q5FYB1	569 aa		11.33	□□□□□ -0.6
CASC19-255	ENST00000641733	ARIH1	Q9Y4X5	557 aa	Predicted RBP	11.32	□□□□□ -0.6
CASC19-255	ENST00000641733	KCNV2	Q8TDN2	545 aa		11.31	□□□□□ -0.6
CASC19-255	ENST00000641733	ARHGEF1	Q92888	912 aa	Known RBP	11.31	□□□□□ -0.6
CASC19-255	ENST00000641733	DPYSL4	O14531	572 aa		11.3	□□□□□ -0.6
CASC19-255	ENST00000641733	NUDT7	P0C024	238 aa		11.28	□□□□□ -0.6
CASC19-255	ENST00000641733	EMP3	P54852	163 aa		11.28	□□□□□ -0.6
CASC19-255	ENST00000641733	SPDYE16	A6NNV3	312 aa	Predicted RBP	11.27	□□□□□ -0.61
CASC19-255	ENST00000641733	LCE2D	Q5TA82	110 aa	Predicted RBP	11.27	□□□□□ -0.61
CASC19-255	ENST00000641733	EVI5	O60447	810 aa		11.26	□□□□□ -0.61
CASC19-255	ENST00000641733	KHSRP	Q92945	711 aa	Known RBP eCLIP	11.26	□□□□□ -0.61	2e-6	■□□□□ 9.6
CASC19-255	ENST00000641733	PDIA6	Q15084	440 aa		11.25	□□□□□ -0.61
CASC19-255	ENST00000641733	MARVELD3	Q96A59	401 aa		11.24	□□□□□ -0.61
CASC19-255	ENST00000641733	KDM4F	A0A1W2PPD8	638 aa		11.23	□□□□□ -0.61
CASC19-255	ENST00000641733	PSD	A5PKW4	1024 aa	Predicted RBP	11.23	□□□□□ -0.61
CASC19-255	ENST00000641733	ANO8	Q9HCE9	1232 aa	Predicted RBP	11.22	□□□□□ -0.61
CASC19-255	ENST00000641733	ERBB3	P21860	1342 aa		11.22	□□□□□ -0.61
CASC19-255	ENST00000641733	RANGAP1	P46060	587 aa	Predicted RBP	11.2	□□□□□ -0.62
CASC19-255	ENST00000641733	LHX6	Q9UPM6	363 aa		11.19	□□□□□ -0.62
CASC19-255	ENST00000641733	FAM205C	A6NFA0	338 aa		11.17	□□□□□ -0.62
CASC19-255	ENST00000641733	PTGER2	P43116	358 aa		11.16	□□□□□ -0.62
CASC19-255	ENST00000641733	VARS2	Q5ST30	1063 aa	Known RBP	11.16	□□□□□ -0.62
CASC19-255	ENST00000641733	POTEG	Q6S5H5	508 aa		11.16	□□□□□ -0.62
CASC19-255	ENST00000641733	JPH4	Q96JJ6	628 aa		11.16	□□□□□ -0.62
CASC19-255	ENST00000641733	POTEM	A6NI47	508 aa		11.15	□□□□□ -0.63
CASC19-255	ENST00000641733	PPP4R3B	Q5MIZ7	849 aa		11.15	□□□□□ -0.63
CASC19-255	ENST00000641733	HS3ST6	Q96QI5	342 aa		11.15	□□□□□ -0.63
CASC19-255	ENST00000641733	ZNF454	Q8N9F8	522 aa		11.14	□□□□□ -0.63
CASC19-255	ENST00000641733	PHF14	O94880	888 aa		11.12	□□□□□ -0.63
CASC19-255	ENST00000641733	FOSB	P53539	338 aa		11.12	□□□□□ -0.63
CASC19-255	ENST00000641733	DDX12P	Q92771	950 aa		11.11	□□□□□ -0.63
CASC19-255	ENST00000641733	EPAS1	Q99814	870 aa		11.11	□□□□□ -0.63
CASC19-255	ENST00000641733	FBXW7	Q969H0	707 aa		11.1	□□□□□ -0.63
CASC19-255	ENST00000641733	TYW1B	Q6NUM6	668 aa		11.09	□□□□□ -0.63
CASC19-255	ENST00000641733	GRXCR2	A6NFK2	248 aa		11.08	□□□□□ -0.64
CASC19-255	ENST00000641733	SEMA3E	O15041	775 aa		11.08	□□□□□ -0.64
CASC19-255	ENST00000641733	SMYD5	Q6GMV2	418 aa		11.08	□□□□□ -0.64
CASC19-255	ENST00000641733	ZDHHC16	Q969W1	377 aa		11.08	□□□□□ -0.64
CASC19-255	ENST00000641733	PCDHGA10	Q9Y5H3	936 aa		11.08	□□□□□ -0.64
CASC19-255	ENST00000641733	ZNF687	Q8N1G0	1237 aa		11.07	□□□□□ -0.64
CASC19-255	ENST00000641733	KCNH8	Q96L42	1107 aa		11.06	□□□□□ -0.64
CASC19-255	ENST00000641733	PBX2	P40425	430 aa		11.05	□□□□□ -0.64
CASC19-255	ENST00000641733	POTEB3	A0JP26	581 aa		11.04	□□□□□ -0.64
CASC19-255	ENST00000641733	TESPA1	A2RU30	521 aa	Predicted RBP	11.04	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms