RNA–Protein interactions for RNA: ENST00000638794.1

SMN2-216, Transcript of survival of motor neuron 2, centromeric, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SMN2, Length 846 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMN2-216ENST00000638794 SCAPERQ9BY12 1400 aa27.67■■■□□ 2.02
SMN2-216ENST00000638794 YEATS2Q9ULM3 1422 aa27.67■■■□□ 2.02
SMN2-216ENST00000638794 SIGLEC1Q9BZZ2 1709 aa27.65■■■□□ 2.02
SMN2-216ENST00000638794 MAGI2Q86UL8 1455 aa27.64■■■□□ 2.02
SMN2-216ENST00000638794 PCF11O94913 1555 aaKnown RBP27.64■■■□□ 2.01
SMN2-216ENST00000638794 RIMS1Q86UR5 1692 aaKnown RBP27.62■■■□□ 2.01
SMN2-216ENST00000638794 CLIP1P30622 1438 aa27.61■■■□□ 2.01
SMN2-216ENST00000638794 EFCAB2Q5VUJ9 269 aa27.61■■■□□ 2.01
SMN2-216ENST00000638794 CASKIN1Q8WXD9 1431 aa27.59■■■□□ 2.01
SMN2-216ENST00000638794 ARHGAP5Q13017 1502 aa27.58■■■□□ 2.01
SMN2-216ENST00000638794 CCDC18Q5T9S5 1454 aa27.57■■■□□ 2
SMN2-216ENST00000638794 ILDR1Q86SU0 546 aaPredicted RBP27.56■■■□□ 2
SMN2-216ENST00000638794 CDC42BPBQ9Y5S2 1711 aa27.54■■■□□ 2
SMN2-216ENST00000638794 ZNF518AQ6AHZ1 1483 aa27.51■■□□□ 1.99
SMN2-216ENST00000638794 PREX2Q70Z35 1606 aa27.5■■□□□ 1.99
SMN2-216ENST00000638794 ATP10AO60312 1499 aa27.5■■□□□ 1.99
SMN2-216ENST00000638794 FYCO1Q9BQS8 1478 aa27.5■■□□□ 1.99
SMN2-216ENST00000638794 KDM5CP41229 1560 aa27.49■■□□□ 1.99
SMN2-216ENST00000638794 FER1L4A9Z1Z3 1794 aa27.49■■□□□ 1.99
SMN2-216ENST00000638794 LMTK3Q96Q04 1460 aa27.48■■□□□ 1.99
SMN2-216ENST00000638794 C9orf84Q5VXU9 1444 aa27.48■■□□□ 1.99
SMN2-216ENST00000638794 MLECQ14165 292 aa27.47■■□□□ 1.99
SMN2-216ENST00000638794 AFAP1Q8N556 730 aa27.45■■□□□ 1.98
SMN2-216ENST00000638794 CDC42BPAQ5VT25 1732 aa27.43■■□□□ 1.98
SMN2-216ENST00000638794 ABCC1P33527 1531 aa27.42■■□□□ 1.98
SMN2-216ENST00000638794 ARHGEF12Q9NZN5 1544 aa27.42■■□□□ 1.98
SMN2-216ENST00000638794 PLPPR3Q6T4P5 718 aa27.42■■□□□ 1.98
SMN2-216ENST00000638794 ITSN2Q9NZM3 1697 aa27.4■■□□□ 1.98
SMN2-216ENST00000638794 DIP2CQ9Y2E4 1556 aa27.39■■□□□ 1.98
SMN2-216ENST00000638794 ABCA6Q8N139 1617 aa27.37■■□□□ 1.97
SMN2-216ENST00000638794 TRAPPC8Q9Y2L5 1435 aa27.36■■□□□ 1.97
SMN2-216ENST00000638794 MLH3Q9UHC1 1453 aa27.36■■□□□ 1.97
SMN2-216ENST00000638794 MYT1LQ9UL68 1186 aa27.35■■□□□ 1.97
SMN2-216ENST00000638794 REREQ9P2R6 1566 aa27.35■■□□□ 1.97
SMN2-216ENST00000638794 HSPA2P54652 639 aa27.3■■□□□ 1.96
SMN2-216ENST00000638794 SAMD9LQ8IVG5 1584 aa27.29■■□□□ 1.96
SMN2-216ENST00000638794 KIDINS220Q9ULH0 1771 aa27.29■■□□□ 1.96
SMN2-216ENST00000638794 GPATCH8Q9UKJ3 1502 aaKnown RBP27.28■■□□□ 1.96
SMN2-216ENST00000638794 PREX1Q8TCU6 1659 aa27.25■■□□□ 1.95
SMN2-216ENST00000638794 SYCP2Q9BX26 1530 aa27.25■■□□□ 1.95
SMN2-216ENST00000638794 ZNF777Q9ULD5 760 aaPredicted RBP27.24■■□□□ 1.95
SMN2-216ENST00000638794 AGLP35573 1532 aa27.24■■□□□ 1.95
SMN2-216ENST00000638794 CEBPAP49715 358 aaPredicted RBP27.23■■□□□ 1.95
SMN2-216ENST00000638794 MTUS2Q5JR59 1369 aa27.2■■□□□ 1.94
SMN2-216ENST00000638794 CEP162Q5TB80 1403 aa27.18■■□□□ 1.94
SMN2-216ENST00000638794 CCNB3Q8WWL7 1395 aa27.18■■□□□ 1.94
SMN2-216ENST00000638794 C3P01024 1663 aa27.17■■□□□ 1.94
SMN2-216ENST00000638794 HNRNPMP52272 730 aaKnown RBP eCLIP27.16■■□□□ 1.94
SMN2-216ENST00000638794 FBXO41Q8TF61 875 aa27.16■■□□□ 1.94
SMN2-216ENST00000638794 CFDP1Q9UEE9 299 aaPredicted RBP27.16■■□□□ 1.94
SMN2-216ENST00000638794 KIAA1107Q9UPP5 1409 aa27.15■■□□□ 1.94
SMN2-216ENST00000638794 PLEKHH2Q8IVE3 1493 aa27.14■■□□□ 1.94
SMN2-216ENST00000638794 SETD1BQ9UPS6 1966 aaKnown RBP27.14■■□□□ 1.94
SMN2-216ENST00000638794 EHBP1L1Q8N3D4 1523 aa27.14■■□□□ 1.94
SMN2-216ENST00000638794 TIAM1Q13009 1591 aa27.13■■□□□ 1.93
SMN2-216ENST00000638794 SPAG9O60271 1321 aaKnown RBP27.13■■□□□ 1.93
SMN2-216ENST00000638794 ATP7AQ04656 1500 aa27.12■■□□□ 1.93
SMN2-216ENST00000638794 INO80Q9ULG1 1556 aaPredicted RBP27.12■■□□□ 1.93
SMN2-216ENST00000638794 UHRF1BP1Q6BDS2 1440 aa27.1■■□□□ 1.93
SMN2-216ENST00000638794 SUPT6HQ7KZ85 1726 aaKnown RBP27.1■■□□□ 1.93
SMN2-216ENST00000638794 ESF1Q9H501 851 aaKnown RBP27.09■■□□□ 1.93
SMN2-216ENST00000638794 CNTLNQ9NXG0 1405 aa27.06■■□□□ 1.92
SMN2-216ENST00000638794 PLXNC1O60486 1568 aa27.05■■□□□ 1.92
SMN2-216ENST00000638794 STRCQ7RTU9 1775 aa27.05■■□□□ 1.92
SMN2-216ENST00000638794 ZNF644Q9H582 1327 aaPredicted RBP27.03■■□□□ 1.92
SMN2-216ENST00000638794 MROH2AA6NES4 1674 aa27.02■■□□□ 1.92
SMN2-216ENST00000638794 A2MP01023 1474 aa27.01■■□□□ 1.91
SMN2-216ENST00000638794 MBD5Q9P267 1494 aa27■■□□□ 1.91
SMN2-216ENST00000638794 ADGBQ8N7X0 1667 aa26.99■■□□□ 1.91
SMN2-216ENST00000638794 NCOA2Q15596 1464 aa26.97■■□□□ 1.91
SMN2-216ENST00000638794 CLTCQ00610 1675 aaKnown RBP26.97■■□□□ 1.91
SMN2-216ENST00000638794 ZMYM3Q14202 1370 aa26.94■■□□□ 1.9
SMN2-216ENST00000638794 NPATQ14207 1427 aa26.93■■□□□ 1.9
SMN2-216ENST00000638794 CERKQ8TCT0 537 aa26.93■■□□□ 1.9
SMN2-216ENST00000638794 LOC105371045A0A1W2PR82 267 aa26.92■■□□□ 1.9
SMN2-216ENST00000638794 DMRT2Q9Y5R5 561 aa26.92■■□□□ 1.9
SMN2-216ENST00000638794 RTEL1-TNFRSF6BF6WH68 1400 aa26.9■■□□□ 1.9
SMN2-216ENST00000638794 VPS8Q8N3P4 1428 aa26.9■■□□□ 1.9
SMN2-216ENST00000638794 CAMSAP2Q08AD1 1489 aa26.9■■□□□ 1.9
SMN2-216ENST00000638794 GGT6Q6P531 493 aa26.89■■□□□ 1.9
SMN2-216ENST00000638794 CCDC141Q6ZP82 1450 aa26.88■■□□□ 1.89
SMN2-216ENST00000638794 PTPRTO14522 1441 aa26.85■■□□□ 1.89
SMN2-216ENST00000638794 NCOA1Q15788 1441 aa26.84■■□□□ 1.89
SMN2-216ENST00000638794 LRRC9Q6ZRR7 1453 aa26.84■■□□□ 1.89
SMN2-216ENST00000638794 MYO3AQ8NEV4 1616 aa26.83■■□□□ 1.89
SMN2-216ENST00000638794 CAMSAP1Q5T5Y3 1602 aa26.83■■□□□ 1.88
SMN2-216ENST00000638794 DHX29Q7Z478 1369 aaKnown RBP26.83■■□□□ 1.88
SMN2-216ENST00000638794 PTPRKQ15262 1439 aa26.82■■□□□ 1.88
SMN2-216ENST00000638794 ZNF142P52746 1687 aaPredicted RBP26.82■■□□□ 1.88
SMN2-216ENST00000638794 PPP6R1Q9UPN7 881 aa26.81■■□□□ 1.88
SMN2-216ENST00000638794 ARHGEF5Q12774 1597 aa26.8■■□□□ 1.88
SMN2-216ENST00000638794 RSPH4AQ5TD94 716 aa26.78■■□□□ 1.88
SMN2-216ENST00000638794 CEP170BQ9Y4F5 1589 aaPredicted RBP26.77■■□□□ 1.88
SMN2-216ENST00000638794 MAP3K1Q13233 1512 aa26.75■■□□□ 1.87
SMN2-216ENST00000638794 KIF3BO15066 747 aa26.74■■□□□ 1.87
SMN2-216ENST00000638794 KANK4Q5T7N3 995 aaPredicted RBP26.73■■□□□ 1.87
SMN2-216ENST00000638794 LTBP4Q8N2S1 1624 aa26.72■■□□□ 1.87
SMN2-216ENST00000638794 KDM5DQ9BY66 1539 aa26.7■■□□□ 1.87
SMN2-216ENST00000638794 FAM135AQ9P2D6 1515 aa26.7■■□□□ 1.86
SMN2-216ENST00000638794 PLA2R1Q13018 1463 aa26.69■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms