RNA–Protein interactions for RNA: ENST00000638016.1

PNKP-230, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 109 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-230ENST00000638016 CDC42BPBQ9Y5S2 1711 aa28.63■■■□□ 2.17
PNKP-230ENST00000638016 ZMYM4Q5VZL5 1548 aa28.62■■■□□ 2.17
PNKP-230ENST00000638016 POGZQ7Z3K3 1410 aa28.6■■■□□ 2.17
PNKP-230ENST00000638016 YEATS2Q9ULM3 1422 aa28.6■■■□□ 2.17
PNKP-230ENST00000638016 EFCAB2Q5VUJ9 269 aa28.6■■■□□ 2.17
PNKP-230ENST00000638016 PREX2Q70Z35 1606 aa28.58■■■□□ 2.17
PNKP-230ENST00000638016 SIGLEC1Q9BZZ2 1709 aa28.58■■■□□ 2.17
PNKP-230ENST00000638016 ZFYVE16Q7Z3T8 1539 aa28.56■■■□□ 2.16
PNKP-230ENST00000638016 CDC42BPAQ5VT25 1732 aa28.55■■■□□ 2.16
PNKP-230ENST00000638016 ADAMTSL3P82987 1691 aa28.54■■■□□ 2.16
PNKP-230ENST00000638016 BCORL1Q5H9F3 1711 aa28.53■■■□□ 2.16
PNKP-230ENST00000638016 ARID4BQ4LE39 1312 aaPredicted RBP28.52■■■□□ 2.16
PNKP-230ENST00000638016 ARHGEF12Q9NZN5 1544 aa28.48■■■□□ 2.15
PNKP-230ENST00000638016 MADDQ8WXG6 1647 aa28.47■■■□□ 2.15
PNKP-230ENST00000638016 ABCC1P33527 1531 aa28.47■■■□□ 2.15
PNKP-230ENST00000638016 MAGI2Q86UL8 1455 aa28.46■■■□□ 2.15
PNKP-230ENST00000638016 AFAP1Q8N556 730 aa28.46■■■□□ 2.15
PNKP-230ENST00000638016 ZNF518AQ6AHZ1 1483 aa28.45■■■□□ 2.14
PNKP-230ENST00000638016 KDM5CP41229 1560 aa28.45■■■□□ 2.14
PNKP-230ENST00000638016 ITSN2Q9NZM3 1697 aa28.44■■■□□ 2.14
PNKP-230ENST00000638016 TRAPPC8Q9Y2L5 1435 aa28.43■■■□□ 2.14
PNKP-230ENST00000638016 GPATCH8Q9UKJ3 1502 aaKnown RBP28.43■■■□□ 2.14
PNKP-230ENST00000638016 MTUS2Q5JR59 1369 aa28.43■■■□□ 2.14
PNKP-230ENST00000638016 PTPRMP28827 1452 aa28.42■■■□□ 2.14
PNKP-230ENST00000638016 SAMD9LQ8IVG5 1584 aa28.41■■■□□ 2.14
PNKP-230ENST00000638016 HECW2Q9P2P5 1572 aa28.41■■■□□ 2.14
PNKP-230ENST00000638016 ZNF777Q9ULD5 760 aaPredicted RBP28.39■■■□□ 2.14
PNKP-230ENST00000638016 RIMS1Q86UR5 1692 aaKnown RBP28.38■■■□□ 2.13
PNKP-230ENST00000638016 EHBP1L1Q8N3D4 1523 aa28.38■■■□□ 2.13
PNKP-230ENST00000638016 ATP10AO60312 1499 aa28.36■■■□□ 2.13
PNKP-230ENST00000638016 MLECQ14165 292 aa28.36■■■□□ 2.13
PNKP-230ENST00000638016 C9orf84Q5VXU9 1444 aa28.35■■■□□ 2.13
PNKP-230ENST00000638016 SYCP2Q9BX26 1530 aa28.35■■■□□ 2.13
PNKP-230ENST00000638016 DIP2CQ9Y2E4 1556 aa28.35■■■□□ 2.13
PNKP-230ENST00000638016 ABCA6Q8N139 1617 aa28.35■■■□□ 2.13
PNKP-230ENST00000638016 TIAM1Q13009 1591 aa28.34■■■□□ 2.13
PNKP-230ENST00000638016 CCNB3Q8WWL7 1395 aa28.34■■■□□ 2.13
PNKP-230ENST00000638016 MYT1LQ9UL68 1186 aa28.33■■■□□ 2.13
PNKP-230ENST00000638016 VPS8Q8N3P4 1428 aa28.33■■■□□ 2.13
PNKP-230ENST00000638016 MLH3Q9UHC1 1453 aa28.3■■■□□ 2.12
PNKP-230ENST00000638016 CFDP1Q9UEE9 299 aaPredicted RBP28.29■■■□□ 2.12
PNKP-230ENST00000638016 KIDINS220Q9ULH0 1771 aa28.29■■■□□ 2.12
PNKP-230ENST00000638016 FER1L4A9Z1Z3 1794 aa28.27■■■□□ 2.12
PNKP-230ENST00000638016 HNRNPMP52272 730 aaKnown RBP eCLIP28.27■■■□□ 2.12
PNKP-230ENST00000638016 PLPPR3Q6T4P5 718 aa28.27■■■□□ 2.12
PNKP-230ENST00000638016 ZNF644Q9H582 1327 aaPredicted RBP28.25■■■□□ 2.11
PNKP-230ENST00000638016 NCOA2Q15596 1464 aa28.22■■■□□ 2.11
PNKP-230ENST00000638016 SUPT6HQ7KZ85 1726 aaKnown RBP28.22■■■□□ 2.11
PNKP-230ENST00000638016 REREQ9P2R6 1566 aa28.2■■■□□ 2.11
PNKP-230ENST00000638016 KIAA1107Q9UPP5 1409 aa28.18■■■□□ 2.1
PNKP-230ENST00000638016 PLEKHH2Q8IVE3 1493 aa28.17■■■□□ 2.1
PNKP-230ENST00000638016 LRRC9Q6ZRR7 1453 aa28.16■■■□□ 2.1
PNKP-230ENST00000638016 SPAG9O60271 1321 aaKnown RBP28.16■■■□□ 2.1
PNKP-230ENST00000638016 INO80Q9ULG1 1556 aaPredicted RBP28.16■■■□□ 2.1
PNKP-230ENST00000638016 ATP7AQ04656 1500 aa28.15■■■□□ 2.1
PNKP-230ENST00000638016 KANK4Q5T7N3 995 aaPredicted RBP28.15■■■□□ 2.1
PNKP-230ENST00000638016 LMTK3Q96Q04 1460 aa28.13■■■□□ 2.09
PNKP-230ENST00000638016 MBD5Q9P267 1494 aa28.13■■■□□ 2.09
PNKP-230ENST00000638016 AGLP35573 1532 aa28.12■■■□□ 2.09
PNKP-230ENST00000638016 CAMSAP2Q08AD1 1489 aa28.09■■■□□ 2.09
PNKP-230ENST00000638016 CEBPAP49715 358 aaPredicted RBP28.09■■■□□ 2.09
PNKP-230ENST00000638016 MAP3K1Q13233 1512 aa28.07■■■□□ 2.08
PNKP-230ENST00000638016 PLXNC1O60486 1568 aa28.03■■■□□ 2.08
PNKP-230ENST00000638016 A2MP01023 1474 aa28.02■■■□□ 2.08
PNKP-230ENST00000638016 HSPA2P54652 639 aa28.01■■■□□ 2.07
PNKP-230ENST00000638016 CCDC141Q6ZP82 1450 aa27.99■■■□□ 2.07
PNKP-230ENST00000638016 C3P01024 1663 aa27.99■■■□□ 2.07
PNKP-230ENST00000638016 ADGBQ8N7X0 1667 aa27.97■■■□□ 2.07
PNKP-230ENST00000638016 ARHGEF5Q12774 1597 aa27.93■■■□□ 2.06
PNKP-230ENST00000638016 PREX1Q8TCU6 1659 aa27.93■■■□□ 2.06
PNKP-230ENST00000638016 RTEL1-TNFRSF6BF6WH68 1400 aa27.92■■■□□ 2.06
PNKP-230ENST00000638016 MYOM3Q5VTT5 1437 aa27.92■■■□□ 2.06
PNKP-230ENST00000638016 ESF1Q9H501 851 aaKnown RBP27.9■■■□□ 2.06
PNKP-230ENST00000638016 CLTCQ00610 1675 aaKnown RBP27.89■■■□□ 2.06
PNKP-230ENST00000638016 GGT6Q6P531 493 aa27.88■■■□□ 2.05
PNKP-230ENST00000638016 APLP2Q06481 763 aa27.87■■■□□ 2.05
PNKP-230ENST00000638016 CNTLNQ9NXG0 1405 aa27.86■■■□□ 2.05
PNKP-230ENST00000638016 MROH2AA6NES4 1674 aa27.85■■■□□ 2.05
PNKP-230ENST00000638016 DHX29Q7Z478 1369 aaKnown RBP27.85■■■□□ 2.05
PNKP-230ENST00000638016 MIA2Q96PC5 1412 aa27.84■■■□□ 2.05
PNKP-230ENST00000638016 SETD1BQ9UPS6 1966 aaKnown RBP27.83■■■□□ 2.05
PNKP-230ENST00000638016 RSPH4AQ5TD94 716 aa27.82■■■□□ 2.04
PNKP-230ENST00000638016 UHRF1BP1Q6BDS2 1440 aa27.82■■■□□ 2.04
PNKP-230ENST00000638016 ZMYM3Q14202 1370 aa27.81■■■□□ 2.04
PNKP-230ENST00000638016 MAST1Q9Y2H9 1570 aa27.79■■■□□ 2.04
PNKP-230ENST00000638016 PTPN23Q9H3S7 1636 aa27.78■■■□□ 2.04
PNKP-230ENST00000638016 TSPY4P0CV99 314 aa27.78■■■□□ 2.04
PNKP-230ENST00000638016 TSPY10P0CW01 314 aa27.78■■■□□ 2.04
PNKP-230ENST00000638016 KIF3BO15066 747 aa27.77■■■□□ 2.04
PNKP-230ENST00000638016 ILDR1Q86SU0 546 aaPredicted RBP27.74■■■□□ 2.03
PNKP-230ENST00000638016 FGD6Q6ZV73 1430 aa27.73■■■□□ 2.03
PNKP-230ENST00000638016 STRCQ7RTU9 1775 aa27.73■■■□□ 2.03
PNKP-230ENST00000638016 CROCC2H7BZ55 1655 aa27.72■■■□□ 2.03
PNKP-230ENST00000638016 ABCC5O15440 1437 aa27.71■■■□□ 2.03
PNKP-230ENST00000638016 NPATQ14207 1427 aa27.71■■■□□ 2.03
PNKP-230ENST00000638016 PTPRKQ15262 1439 aa27.71■■■□□ 2.03
PNKP-230ENST00000638016 TCOF1Q13428 1488 aaKnown RBP27.69■■■□□ 2.02
PNKP-230ENST00000638016 MYO3AQ8NEV4 1616 aa27.67■■■□□ 2.02
PNKP-230ENST00000638016 KDM5DQ9BY66 1539 aa27.67■■■□□ 2.02
PNKP-230ENST00000638016 DNMT1P26358 1616 aaKnown RBP27.66■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms