RNA–Protein interactions for RNA: ENST00000636214.1

PNKP-225, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 805 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-225ENST00000636214 ARHGAP5Q13017 1502 aa28.95■■■□□ 2.23
PNKP-225ENST00000636214 ZFYVE16Q7Z3T8 1539 aa28.95■■■□□ 2.23
PNKP-225ENST00000636214 POGZQ7Z3K3 1410 aa28.94■■■□□ 2.22
PNKP-225ENST00000636214 MAGI2Q86UL8 1455 aa28.93■■■□□ 2.22
PNKP-225ENST00000636214 BCORL1Q5H9F3 1711 aa28.92■■■□□ 2.22
PNKP-225ENST00000636214 ADAMTSL3P82987 1691 aa28.92■■■□□ 2.22
PNKP-225ENST00000636214 HECW2Q9P2P5 1572 aa28.9■■■□□ 2.22
PNKP-225ENST00000636214 PTPRMP28827 1452 aa28.85■■■□□ 2.21
PNKP-225ENST00000636214 YEATS2Q9ULM3 1422 aa28.85■■■□□ 2.21
PNKP-225ENST00000636214 ZNF518AQ6AHZ1 1483 aa28.84■■■□□ 2.21
PNKP-225ENST00000636214 MADDQ8WXG6 1647 aa28.83■■■□□ 2.21
PNKP-225ENST00000636214 MYT1LQ9UL68 1186 aa28.83■■■□□ 2.21
PNKP-225ENST00000636214 PREX2Q70Z35 1606 aa28.81■■■□□ 2.2
PNKP-225ENST00000636214 CDC42BPBQ9Y5S2 1711 aa28.8■■■□□ 2.2
PNKP-225ENST00000636214 ATP10AO60312 1499 aa28.77■■■□□ 2.2
PNKP-225ENST00000636214 RIMS1Q86UR5 1692 aaKnown RBP28.77■■■□□ 2.2
PNKP-225ENST00000636214 C9orf84Q5VXU9 1444 aa28.76■■■□□ 2.19
PNKP-225ENST00000636214 MLECQ14165 292 aa28.75■■■□□ 2.19
PNKP-225ENST00000636214 CEP162Q5TB80 1403 aa28.75■■■□□ 2.19
PNKP-225ENST00000636214 AFAP1Q8N556 730 aa28.74■■■□□ 2.19
PNKP-225ENST00000636214 CDC42BPAQ5VT25 1732 aa28.73■■■□□ 2.19
PNKP-225ENST00000636214 KDM5CP41229 1560 aa28.72■■■□□ 2.19
PNKP-225ENST00000636214 MTUS2Q5JR59 1369 aa28.72■■■□□ 2.19
PNKP-225ENST00000636214 ABCC1P33527 1531 aa28.71■■■□□ 2.19
PNKP-225ENST00000636214 ZNF777Q9ULD5 760 aaPredicted RBP28.69■■■□□ 2.18
PNKP-225ENST00000636214 SIGLEC1Q9BZZ2 1709 aa28.69■■■□□ 2.18
PNKP-225ENST00000636214 ITSN2Q9NZM3 1697 aa28.68■■■□□ 2.18
PNKP-225ENST00000636214 PLPPR3Q6T4P5 718 aa28.68■■■□□ 2.18
PNKP-225ENST00000636214 FER1L4A9Z1Z3 1794 aa28.67■■■□□ 2.18
PNKP-225ENST00000636214 CCNB3Q8WWL7 1395 aa28.65■■■□□ 2.18
PNKP-225ENST00000636214 TRAPPC8Q9Y2L5 1435 aa28.63■■■□□ 2.17
PNKP-225ENST00000636214 MLH3Q9UHC1 1453 aa28.63■■■□□ 2.17
PNKP-225ENST00000636214 DIP2CQ9Y2E4 1556 aa28.62■■■□□ 2.17
PNKP-225ENST00000636214 ARHGEF12Q9NZN5 1544 aa28.61■■■□□ 2.17
PNKP-225ENST00000636214 GPATCH8Q9UKJ3 1502 aaKnown RBP28.61■■■□□ 2.17
PNKP-225ENST00000636214 CFDP1Q9UEE9 299 aaPredicted RBP28.61■■■□□ 2.17
PNKP-225ENST00000636214 EHBP1L1Q8N3D4 1523 aa28.59■■■□□ 2.17
PNKP-225ENST00000636214 PLEKHH2Q8IVE3 1493 aa28.58■■■□□ 2.17
PNKP-225ENST00000636214 SAMD9LQ8IVG5 1584 aa28.58■■■□□ 2.17
PNKP-225ENST00000636214 ABCA6Q8N139 1617 aa28.58■■■□□ 2.17
PNKP-225ENST00000636214 SYCP2Q9BX26 1530 aa28.57■■■□□ 2.16
PNKP-225ENST00000636214 REREQ9P2R6 1566 aa28.56■■■□□ 2.16
PNKP-225ENST00000636214 ESF1Q9H501 851 aaKnown RBP28.52■■■□□ 2.16
PNKP-225ENST00000636214 LMTK3Q96Q04 1460 aa28.52■■■□□ 2.16
PNKP-225ENST00000636214 SPAG9O60271 1321 aaKnown RBP28.51■■■□□ 2.15
PNKP-225ENST00000636214 LOC105371045A0A1W2PR82 267 aa28.51■■■□□ 2.15
PNKP-225ENST00000636214 HNRNPMP52272 730 aaKnown RBP eCLIP28.51■■■□□ 2.15
PNKP-225ENST00000636214 KIDINS220Q9ULH0 1771 aa28.51■■■□□ 2.15
PNKP-225ENST00000636214 KIAA1107Q9UPP5 1409 aa28.51■■■□□ 2.15
PNKP-225ENST00000636214 TIAM1Q13009 1591 aa28.48■■■□□ 2.15
PNKP-225ENST00000636214 AGLP35573 1532 aa28.48■■■□□ 2.15
PNKP-225ENST00000636214 SUPT6HQ7KZ85 1726 aaKnown RBP28.45■■■□□ 2.14
PNKP-225ENST00000636214 VPS8Q8N3P4 1428 aa28.43■■■□□ 2.14
PNKP-225ENST00000636214 ATP7AQ04656 1500 aa28.43■■■□□ 2.14
PNKP-225ENST00000636214 CEBPAP49715 358 aaPredicted RBP28.4■■■□□ 2.14
PNKP-225ENST00000636214 HSPA2P54652 639 aa28.4■■■□□ 2.14
PNKP-225ENST00000636214 ILDR1Q86SU0 546 aaPredicted RBP28.38■■■□□ 2.13
PNKP-225ENST00000636214 NCOA2Q15596 1464 aa28.38■■■□□ 2.13
PNKP-225ENST00000636214 PREX1Q8TCU6 1659 aa28.38■■■□□ 2.13
PNKP-225ENST00000636214 INO80Q9ULG1 1556 aaPredicted RBP28.37■■■□□ 2.13
PNKP-225ENST00000636214 SETD1BQ9UPS6 1966 aaKnown RBP28.36■■■□□ 2.13
PNKP-225ENST00000636214 ZNF644Q9H582 1327 aaPredicted RBP28.36■■■□□ 2.13
PNKP-225ENST00000636214 CNTLNQ9NXG0 1405 aa28.35■■■□□ 2.13
PNKP-225ENST00000636214 A2MP01023 1474 aa28.33■■■□□ 2.13
PNKP-225ENST00000636214 UHRF1BP1Q6BDS2 1440 aa28.32■■■□□ 2.12
PNKP-225ENST00000636214 C3P01024 1663 aa28.31■■■□□ 2.12
PNKP-225ENST00000636214 ADGBQ8N7X0 1667 aa28.29■■■□□ 2.12
PNKP-225ENST00000636214 CAMSAP2Q08AD1 1489 aa28.28■■■□□ 2.12
PNKP-225ENST00000636214 LRRC9Q6ZRR7 1453 aa28.28■■■□□ 2.12
PNKP-225ENST00000636214 MBD5Q9P267 1494 aa28.28■■■□□ 2.12
PNKP-225ENST00000636214 PLXNC1O60486 1568 aa28.27■■■□□ 2.12
PNKP-225ENST00000636214 CCDC141Q6ZP82 1450 aa28.27■■■□□ 2.12
PNKP-225ENST00000636214 RSPH4AQ5TD94 716 aa28.26■■■□□ 2.11
PNKP-225ENST00000636214 RTEL1-TNFRSF6BF6WH68 1400 aa28.26■■■□□ 2.11
PNKP-225ENST00000636214 APLP2Q06481 763 aa28.25■■■□□ 2.11
PNKP-225ENST00000636214 MAP3K1Q13233 1512 aa28.23■■■□□ 2.11
PNKP-225ENST00000636214 MROH2AA6NES4 1674 aa28.23■■■□□ 2.11
PNKP-225ENST00000636214 GGT6Q6P531 493 aa28.23■■■□□ 2.11
PNKP-225ENST00000636214 TSPY4P0CV99 314 aa28.19■■■□□ 2.1
PNKP-225ENST00000636214 TSPY10P0CW01 314 aa28.19■■■□□ 2.1
PNKP-225ENST00000636214 CLTCQ00610 1675 aaKnown RBP28.17■■■□□ 2.1
PNKP-225ENST00000636214 ZMYM3Q14202 1370 aa28.17■■■□□ 2.1
PNKP-225ENST00000636214 DHX29Q7Z478 1369 aaKnown RBP28.16■■■□□ 2.1
PNKP-225ENST00000636214 PPP6R1Q9UPN7 881 aa28.16■■■□□ 2.1
PNKP-225ENST00000636214 DMRT2Q9Y5R5 561 aa28.16■■■□□ 2.1
PNKP-225ENST00000636214 ARHGEF5Q12774 1597 aa28.16■■■□□ 2.1
PNKP-225ENST00000636214 KANK4Q5T7N3 995 aaPredicted RBP28.15■■■□□ 2.1
PNKP-225ENST00000636214 FBXO41Q8TF61 875 aa28.15■■■□□ 2.1
PNKP-225ENST00000636214 NPATQ14207 1427 aa28.15■■■□□ 2.1
PNKP-225ENST00000636214 MYOM3Q5VTT5 1437 aa28.11■■■□□ 2.09
PNKP-225ENST00000636214 KIF3BO15066 747 aa28.09■■■□□ 2.09
PNKP-225ENST00000636214 MIA2Q96PC5 1412 aa28.09■■■□□ 2.09
PNKP-225ENST00000636214 STRCQ7RTU9 1775 aa28.06■■■□□ 2.08
PNKP-225ENST00000636214 FAM135AQ9P2D6 1515 aa28.02■■■□□ 2.08
PNKP-225ENST00000636214 PTPRKQ15262 1439 aa28.01■■■□□ 2.08
PNKP-225ENST00000636214 MAST1Q9Y2H9 1570 aa28■■■□□ 2.07
PNKP-225ENST00000636214 MYO3AQ8NEV4 1616 aa28■■■□□ 2.07
PNKP-225ENST00000636214 WASHC2CQ9Y4E1 1318 aa27.99■■■□□ 2.07
PNKP-225ENST00000636214 KDM5DQ9BY66 1539 aa27.99■■■□□ 2.07
PNKP-225ENST00000636214 CERKQ8TCT0 537 aa27.99■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms