RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 CHMP4CQ96CF2 233 aa7.54□□□□□ -1.2
SCN1A-212ENST00000636194 MARCH6O60337 910 aa7.53□□□□□ -1.2
SCN1A-212ENST00000636194 HDGFP51858 240 aaKnown RBP7.53□□□□□ -1.2
SCN1A-212ENST00000636194 MRS2Q9HD23 443 aa7.53□□□□□ -1.2
SCN1A-212ENST00000636194 ODF2Q5BJF6 829 aa7.52□□□□□ -1.21
SCN1A-212ENST00000636194 VSIG10Q8N0Z9 540 aa7.52□□□□□ -1.21
SCN1A-212ENST00000636194 CTDP1Q9Y5B0 961 aaPredicted RBP7.52□□□□□ -1.21
SCN1A-212ENST00000636194 MAP7D2Q96T17 732 aa7.51□□□□□ -1.21
SCN1A-212ENST00000636194 CWC22Q9HCG8 908 aaKnown RBP7.51□□□□□ -1.21
SCN1A-212ENST00000636194 BCCIPQ9P287 314 aaKnown RBP eCLIP7.51□□□□□ -1.21
SCN1A-212ENST00000636194 CREBRFQ8IUR6 639 aa7.51□□□□□ -1.21
SCN1A-212ENST00000636194 GBP4Q96PP9 640 aa7.51□□□□□ -1.21
SCN1A-212ENST00000636194 LAS1LQ9Y4W2 734 aaKnown RBP7.51□□□□□ -1.21
SCN1A-212ENST00000636194 IPO7O95373 1038 aaKnown RBP7.51□□□□□ -1.21
SCN1A-212ENST00000636194 CALD1Q05682 793 aaKnown RBP7.5□□□□□ -1.21
SCN1A-212ENST00000636194 NEXNQ0ZGT2 675 aa7.5□□□□□ -1.21
SCN1A-212ENST00000636194 TRIM34Q9BYJ4 488 aa7.5□□□□□ -1.21
SCN1A-212ENST00000636194 TPD52L1Q16890 204 aaPredicted RBP7.5□□□□□ -1.21
SCN1A-212ENST00000636194 ARID3AQ99856 593 aa7.5□□□□□ -1.21
SCN1A-212ENST00000636194 ARID3CA6NKF2 412 aa7.5□□□□□ -1.21
SCN1A-212ENST00000636194 DCTN1Q14203 1278 aa7.5□□□□□ -1.21
SCN1A-212ENST00000636194 GORABQ5T7V8 394 aa7.5□□□□□ -1.21
SCN1A-212ENST00000636194 CCDC191Q8NCU4 936 aa7.5□□□□□ -1.21
SCN1A-212ENST00000636194 MYO6Q9UM54 1294 aa7.5□□□□□ -1.21
SCN1A-212ENST00000636194 R3HCC1Q9Y3T6 440 aaKnown RBP7.49□□□□□ -1.21
SCN1A-212ENST00000636194 AMOTL1Q8IY63 956 aa7.49□□□□□ -1.21
SCN1A-212ENST00000636194 PAF1Q8N7H5 531 aa7.49□□□□□ -1.21
SCN1A-212ENST00000636194 WWC2Q6AWC2 1192 aa7.49□□□□□ -1.21
SCN1A-212ENST00000636194 NOM1Q5C9Z4 860 aaKnown RBP7.49□□□□□ -1.21
SCN1A-212ENST00000636194 CCDC43Q96MW1 224 aaKnown RBP7.48□□□□□ -1.21
SCN1A-212ENST00000636194 RTF1Q92541 710 aaKnown RBP7.48□□□□□ -1.21
SCN1A-212ENST00000636194 NEFHP12036 1026 aa7.48□□□□□ -1.21
SCN1A-212ENST00000636194 ANKRD20A12PQ8NF67 263 aa7.48□□□□□ -1.21
SCN1A-212ENST00000636194 RTN4Q9NQC3 1192 aaKnown RBP7.48□□□□□ -1.21
SCN1A-212ENST00000636194 PES1O00541 588 aaKnown RBP7.48□□□□□ -1.21
SCN1A-212ENST00000636194 CT47A1Q5JQC4 288 aaPredicted RBP7.47□□□□□ -1.21
SCN1A-212ENST00000636194 POGKQ9P215 609 aa7.47□□□□□ -1.21
SCN1A-212ENST00000636194 TEX35Q5T0J7 233 aa7.47□□□□□ -1.21
SCN1A-212ENST00000636194 KDM2AQ9Y2K7 1162 aa7.46□□□□□ -1.21
SCN1A-212ENST00000636194 LRRFIP1Q32MZ4 808 aaKnown RBP7.46□□□□□ -1.22
SCN1A-212ENST00000636194 CAGE1Q8TC20 777 aa7.46□□□□□ -1.22
SCN1A-212ENST00000636194 GOLGA6L3A6NEY3 463 aa7.46□□□□□ -1.22
SCN1A-212ENST00000636194 CCDC97Q96F63 343 aaPredicted RBP7.46□□□□□ -1.22
SCN1A-212ENST00000636194 HOOK1Q9UJC3 728 aaKnown RBP7.46□□□□□ -1.22
SCN1A-212ENST00000636194 RUFY1Q96T51 708 aa7.46□□□□□ -1.22
SCN1A-212ENST00000636194 NOL10Q9BSC4 688 aaKnown RBP7.46□□□□□ -1.22
SCN1A-212ENST00000636194 CCDC173Q0VFZ6 552 aa7.45□□□□□ -1.22
SCN1A-212ENST00000636194 CCDC47Q96A33 483 aaKnown RBP7.45□□□□□ -1.22
SCN1A-212ENST00000636194 AKAP17AQ02040 695 aaKnown RBP7.45□□□□□ -1.22
SCN1A-212ENST00000636194 ANKRD18AQ8IVF6 992 aa7.45□□□□□ -1.22
SCN1A-212ENST00000636194 FRAT2O75474 233 aaPredicted RBP7.44□□□□□ -1.22
SCN1A-212ENST00000636194 SUPT16HQ9Y5B9 1047 aaKnown RBP7.44□□□□□ -1.22
SCN1A-212ENST00000636194 FOXD1Q16676 465 aa7.44□□□□□ -1.22
SCN1A-212ENST00000636194 FEZ1Q99689 392 aa7.44□□□□□ -1.22
SCN1A-212ENST00000636194 LOC105371045A0A1W2PR82 267 aa7.44□□□□□ -1.22
SCN1A-212ENST00000636194 IPO8O15397 1037 aaKnown RBP7.43□□□□□ -1.22
SCN1A-212ENST00000636194 ACBD3Q9H3P7 528 aa7.43□□□□□ -1.22
SCN1A-212ENST00000636194 SPAG9O60271 1321 aaKnown RBP7.42□□□□□ -1.22
SCN1A-212ENST00000636194 WASHC2AQ641Q2 1341 aa7.42□□□□□ -1.22
SCN1A-212ENST00000636194 GTF2E1P29083 439 aaPredicted RBP7.42□□□□□ -1.22
SCN1A-212ENST00000636194 P3H3Q8IVL6 736 aa7.42□□□□□ -1.22
SCN1A-212ENST00000636194 CCAR2Q8N163 923 aaKnown RBP7.42□□□□□ -1.22
SCN1A-212ENST00000636194 KIF16BQ96L93 1317 aa7.41□□□□□ -1.22
SCN1A-212ENST00000636194 GOLGA6L19H0YKK7 550 aa7.41□□□□□ -1.22
SCN1A-212ENST00000636194 PPM1FP49593 454 aaPredicted RBP7.41□□□□□ -1.22
SCN1A-212ENST00000636194 KANK1Q14678 1352 aa7.41□□□□□ -1.22
SCN1A-212ENST00000636194 DDX10Q13206 875 aaKnown RBP7.41□□□□□ -1.22
SCN1A-212ENST00000636194 SF3A1Q15459 793 aaKnown RBP7.41□□□□□ -1.22
SCN1A-212ENST00000636194 INCENPQ9NQS7 918 aa7.41□□□□□ -1.22
SCN1A-212ENST00000636194 ATP6V1DQ9Y5K8 247 aa7.41□□□□□ -1.22
SCN1A-212ENST00000636194 TRIM21P19474 475 aaKnown RBP7.41□□□□□ -1.22
SCN1A-212ENST00000636194 DYDC1Q8WWB3 177 aa7.41□□□□□ -1.22
SCN1A-212ENST00000636194 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.41□□□□□ -1.22
SCN1A-212ENST00000636194 EZRP15311 586 aaKnown RBP7.4□□□□□ -1.22
SCN1A-212ENST00000636194 EPS15P42566 896 aa7.4□□□□□ -1.22
SCN1A-212ENST00000636194 HOMER1Q86YM7 354 aa7.4□□□□□ -1.22
SCN1A-212ENST00000636194 PLCD4Q9BRC7 762 aa7.4□□□□□ -1.22
SCN1A-212ENST00000636194 CCDC180Q9P1Z9 1646 aa7.4□□□□□ -1.22
SCN1A-212ENST00000636194 SRPK2P78362 688 aaKnown RBP7.4□□□□□ -1.22
SCN1A-212ENST00000636194 CHMP3Q9Y3E7 222 aa7.4□□□□□ -1.22
SCN1A-212ENST00000636194 CCDC112Q8NEF3 446 aa7.4□□□□□ -1.22
SCN1A-212ENST00000636194 MTUS2Q5JR59 1369 aa7.4□□□□□ -1.22
SCN1A-212ENST00000636194 HMGN5P82970 282 aaKnown RBP7.4□□□□□ -1.23
SCN1A-212ENST00000636194 FRAT1Q92837 279 aaPredicted RBP7.4□□□□□ -1.23
SCN1A-212ENST00000636194 HSP90AB2PQ58FF8 381 aa7.39□□□□□ -1.23
SCN1A-212ENST00000636194 PCMTD1Q96MG8 357 aaPredicted RBP7.39□□□□□ -1.23
SCN1A-212ENST00000636194 DESP17661 470 aa7.38□□□□□ -1.23
SCN1A-212ENST00000636194 SYNE3Q6ZMZ3 975 aa7.38□□□□□ -1.23
SCN1A-212ENST00000636194 IPO9Q96P70 1041 aaKnown RBP7.38□□□□□ -1.23
SCN1A-212ENST00000636194 NOP58Q9Y2X3 529 aaKnown RBP7.38□□□□□ -1.23
SCN1A-212ENST00000636194 ZNF330Q9Y3S2 320 aaPredicted RBP7.38□□□□□ -1.23
SCN1A-212ENST00000636194 GOLGA6L7A0A1B0GV03 622 aa7.38□□□□□ -1.23
SCN1A-212ENST00000636194 ZNF771Q7L3S4 317 aaPredicted RBP7.38□□□□□ -1.23
SCN1A-212ENST00000636194 RSF1Q96T23 1441 aaPredicted RBP7.38□□□□□ -1.23
SCN1A-212ENST00000636194 H3BQV1 296 aa7.37□□□□□ -1.23
SCN1A-212ENST00000636194 RGS3P49796 1198 aa7.37□□□□□ -1.23
SCN1A-212ENST00000636194 IFFO2Q5TF58 517 aa7.37□□□□□ -1.23
SCN1A-212ENST00000636194 CCAR1Q8IX12 1150 aaKnown RBP7.37□□□□□ -1.23
SCN1A-212ENST00000636194 CCDC9Q9Y3X0 531 aaKnown RBP7.37□□□□□ -1.23
SCN1A-212ENST00000636194 CWC15Q9P013 229 aaKnown RBP7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms