RNA–Protein interactions for RNA: ENST00000623610.1

CDKL5-206, Transcript of cyclin dependent kinase like 5, humanhuman

Gene CDKL5, Length 2,130 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5-206ENST00000623610 PDS5BQ9NTI5 1447 aa12.16□□□□□ -0.46
CDKL5-206ENST00000623610 CFTRP13569 1480 aa12.16□□□□□ -0.46
CDKL5-206ENST00000623610 SLC24A3Q9HC58 644 aa12.15□□□□□ -0.46
CDKL5-206ENST00000623610 TEX2Q8IWB9 1127 aa12.13□□□□□ -0.47
CDKL5-206ENST00000623610 KDM4AO75164 1064 aa12.13□□□□□ -0.47
CDKL5-206ENST00000623610 CHGAP10645 457 aaKnown RBP12.1□□□□□ -0.47
CDKL5-206ENST00000623610 U3KPZ7 1027 aaPredicted RBP12.1□□□□□ -0.47
CDKL5-206ENST00000623610 THOC2Q8NI27 1593 aaKnown RBP12.1□□□□□ -0.47
CDKL5-206ENST00000623610 FANCD2Q9BXW9 1451 aa12.09□□□□□ -0.47
CDKL5-206ENST00000623610 CCDC125Q86Z20 511 aa12.08□□□□□ -0.47
CDKL5-206ENST00000623610 RBM10P98175 930 aaKnown RBP12.07□□□□□ -0.48
CDKL5-206ENST00000623610 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.07□□□□□ -0.48
CDKL5-206ENST00000623610 CEP164Q9UPV0 1460 aa12.07□□□□□ -0.48
CDKL5-206ENST00000623610 ZNF316A6NFI3 1004 aaPredicted RBP12.07□□□□□ -0.48
CDKL5-206ENST00000623610 CUX2O14529 1486 aa12.06□□□□□ -0.48
CDKL5-206ENST00000623610 PRDM2Q13029 1718 aa12.06□□□□□ -0.48
CDKL5-206ENST00000623610 DCAF8L1A6NGE4 600 aa12.06□□□□□ -0.48
CDKL5-206ENST00000623610 CNPY4Q8N129 248 aa12.06□□□□□ -0.48
CDKL5-206ENST00000623610 PLCD4Q9BRC7 762 aa12.06□□□□□ -0.48
CDKL5-206ENST00000623610 MKRN3Q13064 507 aaKnown RBP12.05□□□□□ -0.48
CDKL5-206ENST00000623610 MRC2Q9UBG0 1479 aa12.04□□□□□ -0.48
CDKL5-206ENST00000623610 ZC3H15Q8WU90 426 aaKnown RBP12.01□□□□□ -0.49
CDKL5-206ENST00000623610 CLSPNQ9HAW4 1339 aa12□□□□□ -0.49
CDKL5-206ENST00000623610 WDR62O43379 1518 aa12□□□□□ -0.49
CDKL5-206ENST00000623610 ZNF219Q9P2Y4 722 aaPredicted RBP11.98□□□□□ -0.49
CDKL5-206ENST00000623610 URB2Q14146 1524 aaKnown RBP11.98□□□□□ -0.49
CDKL5-206ENST00000623610 SETQ01105 290 aaPredicted RBP11.97□□□□□ -0.49
CDKL5-206ENST00000623610 IL27Q8NEV9 243 aa11.96□□□□□ -0.5
CDKL5-206ENST00000623610 SPDYE4A6NLX3 237 aa11.95□□□□□ -0.5
CDKL5-206ENST00000623610 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.95□□□□□ -0.5
CDKL5-206ENST00000623610 HNRNPUL2Q1KMD3 747 aaKnown RBP11.95□□□□□ -0.5
CDKL5-206ENST00000623610 PTMSP20962 102 aa11.95□□□□□ -0.5
CDKL5-206ENST00000623610 ANAPC15P60006 121 aa11.95□□□□□ -0.5
CDKL5-206ENST00000623610 MKRN4PQ13434 485 aaPredicted RBP11.95□□□□□ -0.5
CDKL5-206ENST00000623610 GPBP1L1Q9HC44 474 aaPredicted RBP11.94□□□□□ -0.5
CDKL5-206ENST00000623610 FBXW7Q969H0 707 aa11.92□□□□□ -0.5
CDKL5-206ENST00000623610 ANP32EQ9BTT0 268 aa11.92□□□□□ -0.5
CDKL5-206ENST00000623610 IRF5Q13568 498 aa11.92□□□□□ -0.5
CDKL5-206ENST00000623610 MAFGO15525 162 aa11.9□□□□□ -0.5
CDKL5-206ENST00000623610 PROM2Q8N271 834 aa11.9□□□□□ -0.5
CDKL5-206ENST00000623610 TOPBP1Q92547 1522 aa11.9□□□□□ -0.5
CDKL5-206ENST00000623610 CHRM1P11229 460 aaPredicted RBP11.9□□□□□ -0.5
CDKL5-206ENST00000623610 SMARCA5O60264 1052 aaPredicted RBP11.89□□□□□ -0.51
CDKL5-206ENST00000623610 FAM43BQ6ZT52 329 aaPredicted RBP11.89□□□□□ -0.51
CDKL5-206ENST00000623610 WDR70Q9NW82 654 aa11.89□□□□□ -0.51
CDKL5-206ENST00000623610 RETREG2Q8NC44 543 aa11.89□□□□□ -0.51
CDKL5-206ENST00000623610 LOC102724159A0A0B4J2E5 919 aa11.88□□□□□ -0.51
CDKL5-206ENST00000623610 PWP2Q15269 919 aaKnown RBP11.88□□□□□ -0.51
CDKL5-206ENST00000623610 DNMBPQ6XZF7 1577 aa11.88□□□□□ -0.51
CDKL5-206ENST00000623610 GRIPAP1Q4V328 841 aa11.87□□□□□ -0.51
CDKL5-206ENST00000623610 ABCC8Q09428 1581 aa11.86□□□□□ -0.51
CDKL5-206ENST00000623610 EXOC8Q8IYI6 725 aa11.86□□□□□ -0.51
CDKL5-206ENST00000623610 BRD1O95696 1058 aa11.84□□□□□ -0.51
CDKL5-206ENST00000623610 WWC1Q8IX03 1113 aa11.84□□□□□ -0.51
CDKL5-206ENST00000623610 NAP1L2Q9ULW6 460 aaPredicted RBP11.84□□□□□ -0.51
CDKL5-206ENST00000623610 RIPOR2Q9Y4F9 1068 aa11.84□□□□□ -0.51
CDKL5-206ENST00000623610 GPATCH11Q8N954 259 aa11.83□□□□□ -0.52
CDKL5-206ENST00000623610 SECISBP2LQ93073 1101 aaKnown RBP11.83□□□□□ -0.52
CDKL5-206ENST00000623610 DNAJC2Q99543 621 aaKnown RBP11.83□□□□□ -0.52
CDKL5-206ENST00000623610 CUX1P39880 1505 aa11.83□□□□□ -0.52
CDKL5-206ENST00000623610 CLUAP1Q96AJ1 413 aa11.83□□□□□ -0.52
CDKL5-206ENST00000623610 POLA1P09884 1462 aaPredicted RBP11.81□□□□□ -0.52
CDKL5-206ENST00000623610 NOL8Q76FK4 1167 aaKnown RBP11.81□□□□□ -0.52
CDKL5-206ENST00000623610 MCCP23508 829 aa11.81□□□□□ -0.52
CDKL5-206ENST00000623610 BARGINQ6ZT62 677 aa11.81□□□□□ -0.52
CDKL5-206ENST00000623610 FAM50AQ14320 339 aaKnown RBP11.8□□□□□ -0.52
CDKL5-206ENST00000623610 IFT140Q96RY7 1462 aa11.8□□□□□ -0.52
CDKL5-206ENST00000623610 HSP90AB4PQ58FF6 505 aa11.8□□□□□ -0.52
CDKL5-206ENST00000623610 SALL2Q9Y467 1007 aaPredicted RBP11.8□□□□□ -0.52
CDKL5-206ENST00000623610 ZNF608Q9ULD9 1512 aaPredicted RBP11.79□□□□□ -0.52
CDKL5-206ENST00000623610 TRAK2O60296 914 aa11.79□□□□□ -0.52
CDKL5-206ENST00000623610 KCNV2Q8TDN2 545 aa11.79□□□□□ -0.52
CDKL5-206ENST00000623610 KCNG1Q9UIX4 513 aa11.79□□□□□ -0.52
CDKL5-206ENST00000623610 UNCXA6NJT0 531 aa11.78□□□□□ -0.52
CDKL5-206ENST00000623610 FGD5Q6ZNL6 1462 aa11.78□□□□□ -0.52
CDKL5-206ENST00000623610 RAD54L2Q9Y4B4 1467 aa11.78□□□□□ -0.52
CDKL5-206ENST00000623610 DEKP35659 375 aaKnown RBP11.78□□□□□ -0.52
CDKL5-206ENST00000623610 TARBP1Q13395 1621 aaKnown RBP11.77□□□□□ -0.52
CDKL5-206ENST00000623610 NKX1-1Q15270 411 aaPredicted RBP11.77□□□□□ -0.52
CDKL5-206ENST00000623610 P3H3Q8IVL6 736 aa11.77□□□□□ -0.52
CDKL5-206ENST00000623610 PLEKHD1A6NEE1 506 aa11.76□□□□□ -0.53
CDKL5-206ENST00000623610 HS6ST3Q8IZP7 471 aa11.76□□□□□ -0.53
CDKL5-206ENST00000623610 SPATA32Q96LK8 384 aa11.76□□□□□ -0.53
CDKL5-206ENST00000623610 SOGA1O94964 1423 aa11.76□□□□□ -0.53
CDKL5-206ENST00000623610 LAS1LQ9Y4W2 734 aaKnown RBP11.75□□□□□ -0.53
CDKL5-206ENST00000623610 WRNQ14191 1432 aaPredicted RBP eCLIP11.75□□□□□ -0.53
CDKL5-206ENST00000623610 ANKRD13AQ8IZ07 590 aa11.75□□□□□ -0.53
CDKL5-206ENST00000623610 IGSF5Q9NSI5 407 aa11.75□□□□□ -0.53
CDKL5-206ENST00000623610 OS9Q13438 667 aaPredicted RBP11.74□□□□□ -0.53
CDKL5-206ENST00000623610 TMTC2Q8N394 836 aa11.74□□□□□ -0.53
CDKL5-206ENST00000623610 SPOCK2Q92563 424 aa11.74□□□□□ -0.53
CDKL5-206ENST00000623610 SYNJ1O43426 1573 aa11.74□□□□□ -0.53
CDKL5-206ENST00000623610 SGSM3Q96HU1 749 aa11.74□□□□□ -0.53
CDKL5-206ENST00000623610 AQRO60306 1485 aaKnown RBP eCLIP11.73□□□□□ -0.53
CDKL5-206ENST00000623610 EIF4G3O43432 1585 aaKnown RBP11.73□□□□□ -0.53
CDKL5-206ENST00000623610 ERICH6BQ5W0A0 696 aa11.73□□□□□ -0.53
CDKL5-206ENST00000623610 MARCH6O60337 910 aa11.72□□□□□ -0.53
CDKL5-206ENST00000623610 AMOTL2Q9Y2J4 779 aa11.72□□□□□ -0.53
CDKL5-206ENST00000623610 TOP2BQ02880 1626 aa11.72□□□□□ -0.53
CDKL5-206ENST00000623610 TDRD9Q8NDG6 1382 aaKnown RBP11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms