RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 HOXB3P14651 431 aaPredicted RBP14.65□□□□□ -0.06
VPS29-212ENST00000621131 RYDENQ9NUL5 291 aaKnown RBP14.65□□□□□ -0.06
VPS29-212ENST00000621131 KIF3CO14782 793 aa14.63□□□□□ -0.07
VPS29-212ENST00000621131 C2orf72A6NCS6 295 aa14.59□□□□□ -0.07
VPS29-212ENST00000621131 DOK7Q18PE1 504 aa14.56□□□□□ -0.08
VPS29-212ENST00000621131 BBXQ8WY36 941 aaPredicted RBP14.56□□□□□ -0.08
VPS29-212ENST00000621131 TMC2Q8TDI7 906 aa14.53□□□□□ -0.08
VPS29-212ENST00000621131 MARVELD3Q96A59 401 aa14.51□□□□□ -0.09
VPS29-212ENST00000621131 ZNF710Q8N1W2 664 aa14.5□□□□□ -0.09
VPS29-212ENST00000621131 HOXB1P14653 301 aaPredicted RBP14.48□□□□□ -0.09
VPS29-212ENST00000621131 GPHNQ9NQX3 736 aaPredicted RBP14.48□□□□□ -0.09
VPS29-212ENST00000621131 RIMBP2O15034 1052 aa14.46□□□□□ -0.09
VPS29-212ENST00000621131 ZSWIM6Q9HCJ5 1215 aa14.46□□□□□ -0.09
VPS29-212ENST00000621131 GPR153Q6NV75 609 aa14.45□□□□□ -0.1
VPS29-212ENST00000621131 PCDH10Q9P2E7 1040 aa14.45□□□□□ -0.1
VPS29-212ENST00000621131 FOXK1P85037 733 aa14.43□□□□□ -0.1
VPS29-212ENST00000621131 EMP3P54852 163 aa14.42□□□□□ -0.1
VPS29-212ENST00000621131 CRISPLD2Q9H0B8 497 aa14.41□□□□□ -0.1
VPS29-212ENST00000621131 SLC34A2O95436 690 aa14.4□□□□□ -0.1
VPS29-212ENST00000621131 DSG2Q14126 1118 aa14.39□□□□□ -0.11
VPS29-212ENST00000621131 POTEB3A0JP26 581 aa14.38□□□□□ -0.11
VPS29-212ENST00000621131 ARSIQ5FYB1 569 aa14.38□□□□□ -0.11
VPS29-212ENST00000621131 POTEBQ6S5H4 581 aa14.38□□□□□ -0.11
VPS29-212ENST00000621131 CDAN1Q8IWY9 1227 aa14.38□□□□□ -0.11
VPS29-212ENST00000621131 PLPP6Q8IY26 295 aa14.38□□□□□ -0.11
VPS29-212ENST00000621131 NCKAP5LQ9HCH0 1330 aa14.38□□□□□ -0.11
VPS29-212ENST00000621131 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.37□□□□□ -0.11
VPS29-212ENST00000621131 FAM205CA6NFA0 338 aa14.36□□□□□ -0.11
VPS29-212ENST00000621131 PDE4AP27815 886 aa14.36□□□□□ -0.11
VPS29-212ENST00000621131 SPRYD3Q8NCJ5 442 aa14.36□□□□□ -0.11
VPS29-212ENST00000621131 KHSRPQ92945 711 aaKnown RBP eCLIP14.35□□□□□ -0.116e-11■□□□□ 11.2
VPS29-212ENST00000621131 CADPS2Q86UW7 1296 aa14.34□□□□□ -0.11
VPS29-212ENST00000621131 HS3ST6Q96QI5 342 aa14.34□□□□□ -0.11
VPS29-212ENST00000621131 PCDHGA4Q9Y5G9 962 aa14.32□□□□□ -0.12
VPS29-212ENST00000621131 PTCD2Q8WV60 388 aaKnown RBP14.3□□□□□ -0.12
VPS29-212ENST00000621131 PAXIP1Q6ZW49 1069 aaPredicted RBP14.29□□□□□ -0.12
VPS29-212ENST00000621131 LARP6Q9BRS8 491 aaKnown RBP14.29□□□□□ -0.12
VPS29-212ENST00000621131 ERBB3P21860 1342 aa14.29□□□□□ -0.12
VPS29-212ENST00000621131 PPP1R15BQ5SWA1 713 aa14.27□□□□□ -0.13
VPS29-212ENST00000621131 MFSD10Q14728 455 aa14.26□□□□□ -0.13
VPS29-212ENST00000621131 CFAP44Q96MT7 982 aa14.26□□□□□ -0.13
VPS29-212ENST00000621131 NUDT7P0C024 238 aa14.24□□□□□ -0.13
VPS29-212ENST00000621131 VARS2Q5ST30 1063 aaKnown RBP14.23□□□□□ -0.13
VPS29-212ENST00000621131 DDX27Q96GQ7 796 aaKnown RBP14.23□□□□□ -0.13
VPS29-212ENST00000621131 KDM4FA0A1W2PPD8 638 aa14.22□□□□□ -0.13
VPS29-212ENST00000621131 ZNF316A6NFI3 1004 aaPredicted RBP14.22□□□□□ -0.13
VPS29-212ENST00000621131 OXER1Q8TDS5 423 aa14.2□□□□□ -0.14
VPS29-212ENST00000621131 LHX6Q9UPM6 363 aa14.18□□□□□ -0.14
VPS29-212ENST00000621131 TBC1D12O60347 775 aa14.17□□□□□ -0.14
VPS29-212ENST00000621131 KRTAP3-3Q9BYR6 98 aa14.17□□□□□ -0.14
VPS29-212ENST00000621131 KRTAP3-2Q9BYR7 98 aa14.17□□□□□ -0.14
VPS29-212ENST00000621131 ZNF687Q8N1G0 1237 aa14.16□□□□□ -0.14
VPS29-212ENST00000621131 UPF1Q92900 1129 aaKnown RBP eCLIP14.14□□□□□ -0.15
VPS29-212ENST00000621131 EMILIN3Q9NT22 766 aa14.1□□□□□ -0.15
VPS29-212ENST00000621131 CAMK2BQ13554 666 aa14.07□□□□□ -0.16
VPS29-212ENST00000621131 SPNS2Q8IVW8 549 aa14.04□□□□□ -0.16
VPS29-212ENST00000621131 ANO8Q9HCE9 1232 aaPredicted RBP14.04□□□□□ -0.16
VPS29-212ENST00000621131 PSDA5PKW4 1024 aaPredicted RBP14.03□□□□□ -0.16
VPS29-212ENST00000621131 MAP3K9P80192 1104 aa14.02□□□□□ -0.17
VPS29-212ENST00000621131 POTEEQ6S8J3 1075 aa14.01□□□□□ -0.17
VPS29-212ENST00000621131 TSHZ2Q9NRE2 1034 aa14.01□□□□□ -0.17
VPS29-212ENST00000621131 EVI5O60447 810 aa14□□□□□ -0.17
VPS29-212ENST00000621131 PBX2P40425 430 aa13.95□□□□□ -0.18
VPS29-212ENST00000621131 PPP4R3BQ5MIZ7 849 aa13.94□□□□□ -0.18
VPS29-212ENST00000621131 WDR70Q9NW82 654 aa13.94□□□□□ -0.18
VPS29-212ENST00000621131 AXIN2Q9Y2T1 843 aa13.94□□□□□ -0.18
VPS29-212ENST00000621131 DPYSL4O14531 572 aa13.92□□□□□ -0.18
VPS29-212ENST00000621131 FOSBP53539 338 aa13.92□□□□□ -0.18
VPS29-212ENST00000621131 MMRN1Q13201 1228 aa13.92□□□□□ -0.18
VPS29-212ENST00000621131 E2F4Q16254 413 aa13.92□□□□□ -0.18
VPS29-212ENST00000621131 ARHGAP33O14559 1287 aa13.91□□□□□ -0.18
VPS29-212ENST00000621131 PLCB2Q00722 1185 aa13.91□□□□□ -0.18
VPS29-212ENST00000621131 ZNF454Q8N9F8 522 aa13.91□□□□□ -0.18
VPS29-212ENST00000621131 LSM11P83369 360 aaKnown RBP eCLIP13.9□□□□□ -0.189e-7■■■□□ 16.4
VPS29-212ENST00000621131 ANKRD13DQ6ZTN6 518 aa13.88□□□□□ -0.19
VPS29-212ENST00000621131 JPH4Q96JJ6 628 aa13.88□□□□□ -0.19
VPS29-212ENST00000621131 ARIH1Q9Y4X5 557 aaPredicted RBP13.86□□□□□ -0.19
VPS29-212ENST00000621131 PSEN2P49810 448 aa13.85□□□□□ -0.19
VPS29-212ENST00000621131 BCL2L12Q9HB09 334 aa13.84□□□□□ -0.19
VPS29-212ENST00000621131 DMRTA1Q5VZB9 504 aa13.83□□□□□ -0.2
VPS29-212ENST00000621131 PCDHGA10Q9Y5H3 936 aa13.83□□□□□ -0.2
VPS29-212ENST00000621131 ZDHHC16Q969W1 377 aa13.82□□□□□ -0.2
VPS29-212ENST00000621131 PTGER2P43116 358 aa13.81□□□□□ -0.2
VPS29-212ENST00000621131 PHF14O94880 888 aa13.8□□□□□ -0.2
VPS29-212ENST00000621131 PDIA6Q15084 440 aa13.8□□□□□ -0.2
VPS29-212ENST00000621131 ADAM33Q9BZ11 813 aa13.8□□□□□ -0.2
VPS29-212ENST00000621131 KCNK17Q96T54 332 aa13.79□□□□□ -0.2
VPS29-212ENST00000621131 SPDYE16A6NNV3 312 aaPredicted RBP13.78□□□□□ -0.2
VPS29-212ENST00000621131 TK2O00142 265 aa13.76□□□□□ -0.21
VPS29-212ENST00000621131 ADGRD1Q6QNK2 874 aa13.76□□□□□ -0.21
VPS29-212ENST00000621131 PTPREP23469 700 aa13.75□□□□□ -0.21
VPS29-212ENST00000621131 TYW1BQ6NUM6 668 aa13.75□□□□□ -0.21
VPS29-212ENST00000621131 DDX12PQ92771 950 aa13.73□□□□□ -0.21
VPS29-212ENST00000621131 FBXW7Q969H0 707 aa13.73□□□□□ -0.21
VPS29-212ENST00000621131 KCNH8Q96L42 1107 aa13.73□□□□□ -0.21
VPS29-212ENST00000621131 EPAS1Q99814 870 aa13.73□□□□□ -0.21
VPS29-212ENST00000621131 MYT1LQ9UL68 1186 aa13.73□□□□□ -0.21
VPS29-212ENST00000621131 HRO43593 1189 aa13.71□□□□□ -0.21
VPS29-212ENST00000621131 SLC4A5Q9BY07 1137 aa13.71□□□□□ -0.21
VPS29-212ENST00000621131 VPS9D1Q9Y2B5 631 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms