RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 WIZO95785 1651 aa17.97■□□□□ 0.47
CPSF1-212ENST00000616140 DHX57Q6P158 1386 aaKnown RBP17.97■□□□□ 0.47
CPSF1-212ENST00000616140 RALBP1Q15311 655 aa17.96■□□□□ 0.47
CPSF1-212ENST00000616140 KANK1Q14678 1352 aa17.96■□□□□ 0.47
CPSF1-212ENST00000616140 GGT6Q6P531 493 aa17.96■□□□□ 0.47
CPSF1-212ENST00000616140 LMOD2Q6P5Q4 547 aa17.96■□□□□ 0.47
CPSF1-212ENST00000616140 ROCK2O75116 1388 aaKnown RBP17.95■□□□□ 0.46
CPSF1-212ENST00000616140 FHOD3Q2V2M9 1422 aa17.95■□□□□ 0.46
CPSF1-212ENST00000616140 RUSC2Q8N2Y8 1516 aa17.94■□□□□ 0.46
CPSF1-212ENST00000616140 SOX12O15370 315 aa17.94■□□□□ 0.46
CPSF1-212ENST00000616140 DNTTIP2Q5QJE6 756 aaKnown RBP17.94■□□□□ 0.46
CPSF1-212ENST00000616140 PNNQ9H307 717 aaKnown RBP17.94■□□□□ 0.46
CPSF1-212ENST00000616140 SPRYD3Q8NCJ5 442 aa17.93■□□□□ 0.46
CPSF1-212ENST00000616140 NAP1L5Q96NT1 182 aaPredicted RBP17.92■□□□□ 0.46
CPSF1-212ENST00000616140 SMARCA2P51531 1590 aa17.92■□□□□ 0.46
CPSF1-212ENST00000616140 HSCBQ8IWL3 235 aa17.92■□□□□ 0.46
CPSF1-212ENST00000616140 TOP2AP11388 1531 aaKnown RBP17.91■□□□□ 0.46
CPSF1-212ENST00000616140 PLCB2Q00722 1185 aa17.91■□□□□ 0.46
CPSF1-212ENST00000616140 TCERG1O14776 1098 aaKnown RBP17.91■□□□□ 0.46
CPSF1-212ENST00000616140 STK26Q9P289 416 aa17.91■□□□□ 0.46
CPSF1-212ENST00000616140 ANKRD30AQ9BXX3 1397 aa17.91■□□□□ 0.46
CPSF1-212ENST00000616140 U2AF1L5P0DN76 240 aaPredicted RBP17.9■□□□□ 0.46
CPSF1-212ENST00000616140 U2AF1Q01081 240 aaKnown RBP eCLIP17.9■□□□□ 0.46
CPSF1-212ENST00000616140 ZRSR1Q15695 479 aaKnown RBP17.9■□□□□ 0.46
CPSF1-212ENST00000616140 NLRP13Q86W25 1043 aa17.89■□□□□ 0.45
CPSF1-212ENST00000616140 HAP1P54257 671 aaPredicted RBP17.88■□□□□ 0.45
CPSF1-212ENST00000616140 MLECQ14165 292 aa17.88■□□□□ 0.45
CPSF1-212ENST00000616140 OS9Q13438 667 aaPredicted RBP17.88■□□□□ 0.45
CPSF1-212ENST00000616140 CARMIL2Q6F5E8 1435 aa17.88■□□□□ 0.45
CPSF1-212ENST00000616140 EFCAB2Q5VUJ9 269 aa17.86■□□□□ 0.45
CPSF1-212ENST00000616140 SLKQ9H2G2 1235 aaPredicted RBP17.86■□□□□ 0.45
CPSF1-212ENST00000616140 KCNJ4P48050 445 aa17.85■□□□□ 0.45
CPSF1-212ENST00000616140 HNRNPMP52272 730 aaKnown RBP eCLIP17.85■□□□□ 0.455e-19■■■■■ 50.3
CPSF1-212ENST00000616140 APBB1O00213 710 aa17.83■□□□□ 0.45
CPSF1-212ENST00000616140 FGD1P98174 961 aa17.83■□□□□ 0.45
CPSF1-212ENST00000616140 PDS5BQ9NTI5 1447 aa17.83■□□□□ 0.45
CPSF1-212ENST00000616140 GOLGA2Q08379 1002 aa17.83■□□□□ 0.44
CPSF1-212ENST00000616140 ST20-MTHFSA0A0A6YYL1 179 aa17.83■□□□□ 0.44
CPSF1-212ENST00000616140 IPO8O15397 1037 aaKnown RBP17.82■□□□□ 0.44
CPSF1-212ENST00000616140 CADPSQ9ULU8 1353 aa17.82■□□□□ 0.44
CPSF1-212ENST00000616140 PRKRIP1Q9H875 184 aaPredicted RBP17.82■□□□□ 0.44
CPSF1-212ENST00000616140 TAOK2Q9UL54 1235 aa17.81■□□□□ 0.44
CPSF1-212ENST00000616140 CLUAP1Q96AJ1 413 aa17.81■□□□□ 0.44
CPSF1-212ENST00000616140 IPO9Q96P70 1041 aaKnown RBP17.81■□□□□ 0.44
CPSF1-212ENST00000616140 RWDD1Q9H446 243 aaPredicted RBP17.8■□□□□ 0.44
CPSF1-212ENST00000616140 KIF3BO15066 747 aa17.8■□□□□ 0.44
CPSF1-212ENST00000616140 PDE3BQ13370 1112 aa17.8■□□□□ 0.44
CPSF1-212ENST00000616140 HDGFL2Q7Z4V5 671 aaPredicted RBP17.79■□□□□ 0.44
CPSF1-212ENST00000616140 ITPRIPQ8IWB1 547 aa17.79■□□□□ 0.44
CPSF1-212ENST00000616140 CCDC146Q8IYE0 955 aa17.79■□□□□ 0.44
CPSF1-212ENST00000616140 L1TD1Q5T7N2 865 aaKnown RBP17.78■□□□□ 0.44
CPSF1-212ENST00000616140 CDK11BP21127 795 aaKnown RBP17.76■□□□□ 0.43
CPSF1-212ENST00000616140 GZF1Q9H116 711 aaPredicted RBP17.76■□□□□ 0.43
CPSF1-212ENST00000616140 RTF1Q92541 710 aaKnown RBP17.76■□□□□ 0.43
CPSF1-212ENST00000616140 HDGFP51858 240 aaKnown RBP17.75■□□□□ 0.43
CPSF1-212ENST00000616140 NAP1L2Q9ULW6 460 aaPredicted RBP17.75■□□□□ 0.43
CPSF1-212ENST00000616140 ATAD2BQ9ULI0 1458 aa17.75■□□□□ 0.43
CPSF1-212ENST00000616140 GOLGA6L4A6NEF3 574 aa17.74■□□□□ 0.43
CPSF1-212ENST00000616140 SMC4Q9NTJ3 1288 aa17.74■□□□□ 0.43
CPSF1-212ENST00000616140 CCDC18Q5T9S5 1454 aa17.73■□□□□ 0.43
CPSF1-212ENST00000616140 MCCP23508 829 aa17.72■□□□□ 0.43
CPSF1-212ENST00000616140 JPH4Q96JJ6 628 aa17.72■□□□□ 0.43
CPSF1-212ENST00000616140 RSPH4AQ5TD94 716 aa17.72■□□□□ 0.43
CPSF1-212ENST00000616140 MYBBP1AQ9BQG0 1328 aaKnown RBP17.71■□□□□ 0.43
CPSF1-212ENST00000616140 PANK3Q9H999 370 aa17.71■□□□□ 0.43
CPSF1-212ENST00000616140 PMFBP1Q8TBY8 1022 aa17.71■□□□□ 0.43
CPSF1-212ENST00000616140 CENPJQ9HC77 1338 aaPredicted RBP17.71■□□□□ 0.42
CPSF1-212ENST00000616140 MFAP1P55081 439 aaKnown RBP17.7■□□□□ 0.42
CPSF1-212ENST00000616140 KIF15Q9NS87 1388 aa17.7■□□□□ 0.42
CPSF1-212ENST00000616140 CALD1Q05682 793 aaKnown RBP17.7■□□□□ 0.42
CPSF1-212ENST00000616140 CFAP44Q96MT7 982 aa17.7■□□□□ 0.42
CPSF1-212ENST00000616140 SPAG9O60271 1321 aaKnown RBP17.69■□□□□ 0.42
CPSF1-212ENST00000616140 PLIN1O60240 522 aa17.69■□□□□ 0.42
CPSF1-212ENST00000616140 ZBED9Q6R2W3 1325 aa17.69■□□□□ 0.42
CPSF1-212ENST00000616140 EIF3AQ14152 1382 aaKnown RBP17.69■□□□□ 0.42
CPSF1-212ENST00000616140 MSNP26038 577 aaKnown RBP17.68■□□□□ 0.42
CPSF1-212ENST00000616140 GBP4Q96PP9 640 aa17.68■□□□□ 0.42
CPSF1-212ENST00000616140 NUTM2DQ5VT03 806 aaPredicted RBP17.68■□□□□ 0.42
CPSF1-212ENST00000616140 TRAK1Q9UPV9 953 aa17.67■□□□□ 0.42
CPSF1-212ENST00000616140 EXOC6Q8TAG9 804 aa17.67■□□□□ 0.42
CPSF1-212ENST00000616140 RRP7AQ9Y3A4 280 aaKnown RBP17.66■□□□□ 0.42
CPSF1-212ENST00000616140 PHLDB1Q86UU1 1377 aa17.66■□□□□ 0.42
CPSF1-212ENST00000616140 TRHP20396 242 aaPredicted RBP17.66■□□□□ 0.42
CPSF1-212ENST00000616140 TERF2IPQ9NYB0 399 aa17.66■□□□□ 0.42
CPSF1-212ENST00000616140 USP47Q96K76 1375 aa17.65■□□□□ 0.42
CPSF1-212ENST00000616140 PDE4AP27815 886 aa17.64■□□□□ 0.42
CPSF1-212ENST00000616140 BCL2L13Q9BXK5 485 aa17.64■□□□□ 0.41
CPSF1-212ENST00000616140 CCDC144AA2RUR9 1427 aa17.64■□□□□ 0.41
CPSF1-212ENST00000616140 KIAA1211Q6ZU35 1233 aa17.64■□□□□ 0.41
CPSF1-212ENST00000616140 RRP1P56182 461 aaKnown RBP17.62■□□□□ 0.41
CPSF1-212ENST00000616140 SMARCA4P51532 1647 aa17.62■□□□□ 0.41
CPSF1-212ENST00000616140 NRDCO43847 1150 aa17.62■□□□□ 0.41
CPSF1-212ENST00000616140 PAK3O75914 559 aaPredicted RBP17.62■□□□□ 0.41
CPSF1-212ENST00000616140 WASHC2CQ9Y4E1 1318 aa17.61■□□□□ 0.41
CPSF1-212ENST00000616140 IGF1RP08069 1367 aa17.61■□□□□ 0.41
CPSF1-212ENST00000616140 SLC4A3P48751 1232 aa17.61■□□□□ 0.41
CPSF1-212ENST00000616140 STK31Q9BXU1 1019 aa17.6■□□□□ 0.41
CPSF1-212ENST00000616140 GOLGA6L6A8MZA4 724 aa17.59■□□□□ 0.41
CPSF1-212ENST00000616140 CENPQQ7L2Z9 268 aaPredicted RBP17.59■□□□□ 0.41
CPSF1-212ENST00000616140 CHAF1AQ13111 956 aaPredicted RBP17.58■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 79.5 ms