RNA–Protein interactions for RNA: ENST00000614488.4

SCAMP1-205, Transcript of secretory carrier membrane protein 1, humanhuman

TSL 1 (best)

Gene SCAMP1, Length 1,276 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP1-205ENST00000614488 KIF3CO14782 793 aa13.31□□□□□ -0.28
SCAMP1-205ENST00000614488 CADPS2Q86UW7 1296 aa13.31□□□□□ -0.28
SCAMP1-205ENST00000614488 TMC2Q8TDI7 906 aa13.31□□□□□ -0.28
SCAMP1-205ENST00000614488 CRISPLD2Q9H0B8 497 aa13.31□□□□□ -0.28
SCAMP1-205ENST00000614488 GPHNQ9NQX3 736 aaPredicted RBP13.29□□□□□ -0.28
SCAMP1-205ENST00000614488 C2orf72A6NCS6 295 aa13.28□□□□□ -0.28
SCAMP1-205ENST00000614488 PDE4AP27815 886 aa13.28□□□□□ -0.28
SCAMP1-205ENST00000614488 TSHZ2Q9NRE2 1034 aa13.28□□□□□ -0.28
SCAMP1-205ENST00000614488 NCKAP5LQ9HCH0 1330 aa13.28□□□□□ -0.28
SCAMP1-205ENST00000614488 HAP1P54257 671 aaPredicted RBP13.25□□□□□ -0.29
SCAMP1-205ENST00000614488 FOXK1P85037 733 aa13.23□□□□□ -0.29
SCAMP1-205ENST00000614488 MFSD10Q14728 455 aa13.22□□□□□ -0.29
SCAMP1-205ENST00000614488 LARP6Q9BRS8 491 aaKnown RBP13.2□□□□□ -0.3
SCAMP1-205ENST00000614488 SNPHO15079 494 aa13.19□□□□□ -0.3
SCAMP1-205ENST00000614488 DDX27Q96GQ7 796 aaKnown RBP13.19□□□□□ -0.3
SCAMP1-205ENST00000614488 DSG2Q14126 1118 aa13.18□□□□□ -0.3
SCAMP1-205ENST00000614488 PPP1R15BQ5SWA1 713 aa13.18□□□□□ -0.3
SCAMP1-205ENST00000614488 PLPP6Q8IY26 295 aa13.15□□□□□ -0.3
SCAMP1-205ENST00000614488 DOK7Q18PE1 504 aa13.13□□□□□ -0.31
SCAMP1-205ENST00000614488 HOXB3P14651 431 aaPredicted RBP13.12□□□□□ -0.31
SCAMP1-205ENST00000614488 WDR70Q9NW82 654 aa13.11□□□□□ -0.31
SCAMP1-205ENST00000614488 SLC34A2O95436 690 aa13.1□□□□□ -0.31
SCAMP1-205ENST00000614488 VSIG10Q8N0Z9 540 aa13.09□□□□□ -0.31
SCAMP1-205ENST00000614488 POTEMA6NI47 508 aa13.07□□□□□ -0.32
SCAMP1-205ENST00000614488 RIMBP2O15034 1052 aa13.07□□□□□ -0.32
SCAMP1-205ENST00000614488 CAMK2BQ13554 666 aa13.06□□□□□ -0.32
SCAMP1-205ENST00000614488 ZSWIM6Q9HCJ5 1215 aa13.06□□□□□ -0.32
SCAMP1-205ENST00000614488 POTEGQ6S5H5 508 aa13.05□□□□□ -0.32
SCAMP1-205ENST00000614488 FAM163AQ96GL9 167 aaPredicted RBP13.05□□□□□ -0.32
SCAMP1-205ENST00000614488 LCE2DQ5TA82 110 aaPredicted RBP13.04□□□□□ -0.32
SCAMP1-205ENST00000614488 ZNF710Q8N1W2 664 aa13.04□□□□□ -0.32
SCAMP1-205ENST00000614488 PTCD2Q8WV60 388 aaKnown RBP13.03□□□□□ -0.32
SCAMP1-205ENST00000614488 KDM2AQ9Y2K7 1162 aa13.02□□□□□ -0.33
SCAMP1-205ENST00000614488 E2F4Q16254 413 aa13.01□□□□□ -0.33
SCAMP1-205ENST00000614488 OXER1Q8TDS5 423 aa13□□□□□ -0.33
SCAMP1-205ENST00000614488 PLSCR2Q9NRY7 297 aa12.99□□□□□ -0.33
SCAMP1-205ENST00000614488 ST18O60284 1047 aa12.98□□□□□ -0.33
SCAMP1-205ENST00000614488 SLC24A1O60721 1099 aa12.98□□□□□ -0.33
SCAMP1-205ENST00000614488 EMILIN3Q9NT22 766 aa12.98□□□□□ -0.33
SCAMP1-205ENST00000614488 PCDHGA4Q9Y5G9 962 aa12.98□□□□□ -0.33
SCAMP1-205ENST00000614488 HOXB1P14653 301 aaPredicted RBP12.97□□□□□ -0.33
SCAMP1-205ENST00000614488 GPR153Q6NV75 609 aa12.97□□□□□ -0.33
SCAMP1-205ENST00000614488 TBC1D12O60347 775 aa12.96□□□□□ -0.33
SCAMP1-205ENST00000614488 P3H3Q8IVL6 736 aa12.95□□□□□ -0.34
SCAMP1-205ENST00000614488 UPF1Q92900 1129 aaKnown RBP eCLIP12.95□□□□□ -0.34
SCAMP1-205ENST00000614488 ARIH1Q9Y4X5 557 aaPredicted RBP12.94□□□□□ -0.34
SCAMP1-205ENST00000614488 ARSIQ5FYB1 569 aa12.92□□□□□ -0.34
SCAMP1-205ENST00000614488 KCNV2Q8TDN2 545 aa12.91□□□□□ -0.34
SCAMP1-205ENST00000614488 MAP3K9P80192 1104 aa12.9□□□□□ -0.34
SCAMP1-205ENST00000614488 DPYSL4O14531 572 aa12.88□□□□□ -0.35
SCAMP1-205ENST00000614488 ARHGEF1Q92888 912 aaKnown RBP12.88□□□□□ -0.35
SCAMP1-205ENST00000614488 KDM4FA0A1W2PPD8 638 aa12.87□□□□□ -0.35
SCAMP1-205ENST00000614488 ZNF316A6NFI3 1004 aaPredicted RBP12.87□□□□□ -0.35
SCAMP1-205ENST00000614488 KHSRPQ92945 711 aaKnown RBP eCLIP12.87□□□□□ -0.352e-6■■□□□ 11.7
SCAMP1-205ENST00000614488 NUDT7P0C024 238 aa12.86□□□□□ -0.35
SCAMP1-205ENST00000614488 EMP3P54852 163 aa12.84□□□□□ -0.35
SCAMP1-205ENST00000614488 PDIA6Q15084 440 aa12.84□□□□□ -0.35
SCAMP1-205ENST00000614488 SPDYE16A6NNV3 312 aaPredicted RBP12.83□□□□□ -0.36
SCAMP1-205ENST00000614488 EVI5O60447 810 aa12.83□□□□□ -0.36
SCAMP1-205ENST00000614488 MARVELD3Q96A59 401 aa12.83□□□□□ -0.36
SCAMP1-205ENST00000614488 ANO8Q9HCE9 1232 aaPredicted RBP12.82□□□□□ -0.36
SCAMP1-205ENST00000614488 PSDA5PKW4 1024 aaPredicted RBP12.77□□□□□ -0.37
SCAMP1-205ENST00000614488 LHX6Q9UPM6 363 aa12.77□□□□□ -0.37
SCAMP1-205ENST00000614488 ERBB3P21860 1342 aa12.77□□□□□ -0.37
SCAMP1-205ENST00000614488 FAM205CA6NFA0 338 aa12.74□□□□□ -0.37
SCAMP1-205ENST00000614488 PTGER2P43116 358 aa12.74□□□□□ -0.37
SCAMP1-205ENST00000614488 PCDH10Q9P2E7 1040 aa12.74□□□□□ -0.37
SCAMP1-205ENST00000614488 VARS2Q5ST30 1063 aaKnown RBP12.72□□□□□ -0.37
SCAMP1-205ENST00000614488 JPH4Q96JJ6 628 aa12.72□□□□□ -0.37
SCAMP1-205ENST00000614488 HS3ST6Q96QI5 342 aa12.72□□□□□ -0.37
SCAMP1-205ENST00000614488 FOSBP53539 338 aa12.7□□□□□ -0.38
SCAMP1-205ENST00000614488 PPP4R3BQ5MIZ7 849 aa12.69□□□□□ -0.38
SCAMP1-205ENST00000614488 PHF14O94880 888 aa12.68□□□□□ -0.38
SCAMP1-205ENST00000614488 POTEB3A0JP26 581 aa12.67□□□□□ -0.38
SCAMP1-205ENST00000614488 POTEBQ6S5H4 581 aa12.67□□□□□ -0.38
SCAMP1-205ENST00000614488 ZNF454Q8N9F8 522 aa12.67□□□□□ -0.38
SCAMP1-205ENST00000614488 CDAN1Q8IWY9 1227 aa12.66□□□□□ -0.38
SCAMP1-205ENST00000614488 EPAS1Q99814 870 aa12.66□□□□□ -0.38
SCAMP1-205ENST00000614488 ZNF687Q8N1G0 1237 aa12.65□□□□□ -0.38
SCAMP1-205ENST00000614488 PCDHGA10Q9Y5H3 936 aa12.65□□□□□ -0.38
SCAMP1-205ENST00000614488 DDX12PQ92771 950 aa12.64□□□□□ -0.39
SCAMP1-205ENST00000614488 TYW1BQ6NUM6 668 aa12.63□□□□□ -0.39
SCAMP1-205ENST00000614488 FBXW7Q969H0 707 aa12.63□□□□□ -0.39
SCAMP1-205ENST00000614488 SEMA3EO15041 775 aa12.62□□□□□ -0.39
SCAMP1-205ENST00000614488 ZDHHC16Q969W1 377 aa12.62□□□□□ -0.39
SCAMP1-205ENST00000614488 TESPA1A2RU30 521 aaPredicted RBP12.61□□□□□ -0.39
SCAMP1-205ENST00000614488 NBR1Q14596 966 aa12.6□□□□□ -0.39
SCAMP1-205ENST00000614488 GRXCR2A6NFK2 248 aa12.59□□□□□ -0.39
SCAMP1-205ENST00000614488 PBX2P40425 430 aa12.59□□□□□ -0.39
SCAMP1-205ENST00000614488 MLLT3P42568 568 aaPredicted RBP12.59□□□□□ -0.39
SCAMP1-205ENST00000614488 BCL2L12Q9HB09 334 aa12.59□□□□□ -0.39
SCAMP1-205ENST00000614488 ADAM33Q9BZ11 813 aa12.57□□□□□ -0.4
SCAMP1-205ENST00000614488 OSBPP22059 807 aa12.56□□□□□ -0.4
SCAMP1-205ENST00000614488 EN1Q05925 392 aaPredicted RBP12.56□□□□□ -0.4
SCAMP1-205ENST00000614488 SMYD5Q6GMV2 418 aa12.55□□□□□ -0.4
SCAMP1-205ENST00000614488 ARHGAP33O14559 1287 aa12.53□□□□□ -0.4
SCAMP1-205ENST00000614488 PTPREP23469 700 aa12.53□□□□□ -0.4
SCAMP1-205ENST00000614488 POTEEQ6S8J3 1075 aa12.53□□□□□ -0.4
SCAMP1-205ENST00000614488 KCNH8Q96L42 1107 aa12.53□□□□□ -0.4
SCAMP1-205ENST00000614488 PRIM1P49642 420 aaKnown RBP12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 97.8 ms