RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 ADGRL1O94910 1474 aa25.84■■□□□ 1.73
TRIM28-213ENST00000598355 ARHGAP5Q13017 1502 aa25.83■■□□□ 1.73
TRIM28-213ENST00000598355 ARHGEF40Q8TER5 1519 aa25.82■■□□□ 1.72
TRIM28-213ENST00000598355 POGZQ7Z3K3 1410 aa25.8■■□□□ 1.72
TRIM28-213ENST00000598355 MAP3K1Q13233 1512 aa25.79■■□□□ 1.72
TRIM28-213ENST00000598355 ABCC1P33527 1531 aa25.78■■□□□ 1.72
TRIM28-213ENST00000598355 RAPGEF3O95398 923 aa25.78■■□□□ 1.72
TRIM28-213ENST00000598355 MTUS2Q5JR59 1369 aa25.78■■□□□ 1.72
TRIM28-213ENST00000598355 GPATCH8Q9UKJ3 1502 aaKnown RBP25.77■■□□□ 1.72
TRIM28-213ENST00000598355 KDM5CP41229 1560 aa25.77■■□□□ 1.72
TRIM28-213ENST00000598355 ITSN2Q9NZM3 1697 aa25.77■■□□□ 1.72
TRIM28-213ENST00000598355 EFCAB2Q5VUJ9 269 aa25.76■■□□□ 1.71
TRIM28-213ENST00000598355 SCAPERQ9BY12 1400 aa25.76■■□□□ 1.71
TRIM28-213ENST00000598355 SUPT6HQ7KZ85 1726 aaKnown RBP25.74■■□□□ 1.71
TRIM28-213ENST00000598355 SAMD9LQ8IVG5 1584 aa25.73■■□□□ 1.71
TRIM28-213ENST00000598355 MAGI2Q86UL8 1455 aa25.73■■□□□ 1.71
TRIM28-213ENST00000598355 ZNF518AQ6AHZ1 1483 aa25.72■■□□□ 1.71
TRIM28-213ENST00000598355 ZFYVE16Q7Z3T8 1539 aa25.69■■□□□ 1.7
TRIM28-213ENST00000598355 LRRC9Q6ZRR7 1453 aa25.69■■□□□ 1.7
TRIM28-213ENST00000598355 KDM4FA0A1W2PPD8 638 aa25.69■■□□□ 1.7
TRIM28-213ENST00000598355 ARHGEF12Q9NZN5 1544 aa25.68■■□□□ 1.7
TRIM28-213ENST00000598355 HECW2Q9P2P5 1572 aa25.66■■□□□ 1.7
TRIM28-213ENST00000598355 SIGLEC1Q9BZZ2 1709 aa25.66■■□□□ 1.7
TRIM28-213ENST00000598355 CCNB3Q8WWL7 1395 aa25.65■■□□□ 1.7
TRIM28-213ENST00000598355 NCOA2Q15596 1464 aa25.65■■□□□ 1.7
TRIM28-213ENST00000598355 YEATS2Q9ULM3 1422 aa25.64■■□□□ 1.7
TRIM28-213ENST00000598355 SYCP2Q9BX26 1530 aa25.63■■□□□ 1.69
TRIM28-213ENST00000598355 BCORL1Q5H9F3 1711 aa25.62■■□□□ 1.69
TRIM28-213ENST00000598355 ADAMTSL3P82987 1691 aa25.61■■□□□ 1.69
TRIM28-213ENST00000598355 TRAPPC8Q9Y2L5 1435 aa25.61■■□□□ 1.69
TRIM28-213ENST00000598355 PLEKHH2Q8IVE3 1493 aa25.6■■□□□ 1.69
TRIM28-213ENST00000598355 KIAA1107Q9UPP5 1409 aa25.6■■□□□ 1.69
TRIM28-213ENST00000598355 MLH3Q9UHC1 1453 aa25.6■■□□□ 1.69
TRIM28-213ENST00000598355 KIDINS220Q9ULH0 1771 aa25.59■■□□□ 1.69
TRIM28-213ENST00000598355 REREQ9P2R6 1566 aa25.58■■□□□ 1.69
TRIM28-213ENST00000598355 DIP2CQ9Y2E4 1556 aa25.58■■□□□ 1.69
TRIM28-213ENST00000598355 ABCA6Q8N139 1617 aa25.58■■□□□ 1.69
TRIM28-213ENST00000598355 INO80Q9ULG1 1556 aaPredicted RBP25.54■■□□□ 1.68
TRIM28-213ENST00000598355 AEBP2Q6ZN18 517 aaPredicted RBP25.53■■□□□ 1.68
TRIM28-213ENST00000598355 CFDP1Q9UEE9 299 aaPredicted RBP25.53■■□□□ 1.68
TRIM28-213ENST00000598355 C9orf84Q5VXU9 1444 aa25.53■■□□□ 1.68
TRIM28-213ENST00000598355 ATP10AO60312 1499 aa25.53■■□□□ 1.68
TRIM28-213ENST00000598355 AFAP1Q8N556 730 aa25.52■■□□□ 1.68
TRIM28-213ENST00000598355 KANK4Q5T7N3 995 aaPredicted RBP25.51■■□□□ 1.67
TRIM28-213ENST00000598355 MBD5Q9P267 1494 aa25.51■■□□□ 1.67
TRIM28-213ENST00000598355 MADDQ8WXG6 1647 aa25.48■■□□□ 1.67
TRIM28-213ENST00000598355 CAMSAP2Q08AD1 1489 aa25.48■■□□□ 1.67
TRIM28-213ENST00000598355 ATP7AQ04656 1500 aa25.47■■□□□ 1.67
TRIM28-213ENST00000598355 ARHGEF5Q12774 1597 aa25.45■■□□□ 1.66
TRIM28-213ENST00000598355 ZNF777Q9ULD5 760 aaPredicted RBP25.45■■□□□ 1.66
TRIM28-213ENST00000598355 AGLP35573 1532 aa25.44■■□□□ 1.66
TRIM28-213ENST00000598355 MYOM3Q5VTT5 1437 aa25.44■■□□□ 1.66
TRIM28-213ENST00000598355 ZNF644Q9H582 1327 aaPredicted RBP25.42■■□□□ 1.66
TRIM28-213ENST00000598355 MIA2Q96PC5 1412 aa25.42■■□□□ 1.66
TRIM28-213ENST00000598355 FER1L4A9Z1Z3 1794 aa25.41■■□□□ 1.66
TRIM28-213ENST00000598355 PLXNC1O60486 1568 aa25.41■■□□□ 1.66
TRIM28-213ENST00000598355 HNRNPMP52272 730 aaKnown RBP eCLIP25.4■■□□□ 1.66
TRIM28-213ENST00000598355 CCDC141Q6ZP82 1450 aa25.4■■□□□ 1.66
TRIM28-213ENST00000598355 RIMS1Q86UR5 1692 aaKnown RBP25.39■■□□□ 1.66
TRIM28-213ENST00000598355 ADGBQ8N7X0 1667 aa25.39■■□□□ 1.65
TRIM28-213ENST00000598355 PTPRMP28827 1452 aa25.37■■□□□ 1.65
TRIM28-213ENST00000598355 RTEL1-TNFRSF6BF6WH68 1400 aa25.37■■□□□ 1.65
TRIM28-213ENST00000598355 APLP2Q06481 763 aa25.36■■□□□ 1.65
TRIM28-213ENST00000598355 SPAG9O60271 1321 aaKnown RBP25.36■■□□□ 1.65
TRIM28-213ENST00000598355 ARID4BQ4LE39 1312 aaPredicted RBP25.36■■□□□ 1.65
TRIM28-213ENST00000598355 MAST1Q9Y2H9 1570 aa25.34■■□□□ 1.65
TRIM28-213ENST00000598355 PTPN23Q9H3S7 1636 aa25.32■■□□□ 1.64
TRIM28-213ENST00000598355 CROCC2H7BZ55 1655 aa25.31■■□□□ 1.64
TRIM28-213ENST00000598355 TCOF1Q13428 1488 aaKnown RBP25.29■■□□□ 1.64
TRIM28-213ENST00000598355 FGD6Q6ZV73 1430 aa25.29■■□□□ 1.64
TRIM28-213ENST00000598355 A2MP01023 1474 aa25.28■■□□□ 1.64
TRIM28-213ENST00000598355 RSPH4AQ5TD94 716 aa25.28■■□□□ 1.64
TRIM28-213ENST00000598355 MYT1LQ9UL68 1186 aa25.26■■□□□ 1.63
TRIM28-213ENST00000598355 DNMT1P26358 1616 aaKnown RBP25.24■■□□□ 1.63
TRIM28-213ENST00000598355 SHANK2Q9UPX8 1470 aa25.22■■□□□ 1.63
TRIM28-213ENST00000598355 MROH2AA6NES4 1674 aa25.21■■□□□ 1.63
TRIM28-213ENST00000598355 C3P01024 1663 aa25.18■■□□□ 1.62
TRIM28-213ENST00000598355 MLECQ14165 292 aa25.18■■□□□ 1.62
TRIM28-213ENST00000598355 DHX29Q7Z478 1369 aaKnown RBP25.17■■□□□ 1.62
TRIM28-213ENST00000598355 ABCC5O15440 1437 aa25.15■■□□□ 1.62
TRIM28-213ENST00000598355 EIF2AK4Q9P2K8 1649 aaKnown RBP25.15■■□□□ 1.62
TRIM28-213ENST00000598355 DAPK1P53355 1430 aa25.13■■□□□ 1.61
TRIM28-213ENST00000598355 CNTLNQ9NXG0 1405 aa25.13■■□□□ 1.61
TRIM28-213ENST00000598355 FAM135AQ9P2D6 1515 aa25.13■■□□□ 1.61
TRIM28-213ENST00000598355 RNF17Q9BXT8 1623 aaKnown RBP25.12■■□□□ 1.61
TRIM28-213ENST00000598355 CLTCQ00610 1675 aaKnown RBP25.1■■□□□ 1.61
TRIM28-213ENST00000598355 TSPY4P0CV99 314 aa25.1■■□□□ 1.61
TRIM28-213ENST00000598355 TSPY10P0CW01 314 aa25.1■■□□□ 1.61
TRIM28-213ENST00000598355 PREX1Q8TCU6 1659 aa25.1■■□□□ 1.61
TRIM28-213ENST00000598355 LMTK3Q96Q04 1460 aa25.09■■□□□ 1.61
TRIM28-213ENST00000598355 SETD1BQ9UPS6 1966 aaKnown RBP25.09■■□□□ 1.61
TRIM28-213ENST00000598355 DUOX2Q9NRD8 1548 aa25.07■■□□□ 1.6
TRIM28-213ENST00000598355 MROH1Q8NDA8 1641 aa25.05■■□□□ 1.6
TRIM28-213ENST00000598355 ADGRL2O95490 1459 aa25.05■■□□□ 1.6
TRIM28-213ENST00000598355 KDM5DQ9BY66 1539 aa25.02■■□□□ 1.6
TRIM28-213ENST00000598355 ZC3H13Q5T200 1668 aaKnown RBP25.02■■□□□ 1.6
TRIM28-213ENST00000598355 PPP6R1Q9UPN7 881 aa25.02■■□□□ 1.6
TRIM28-213ENST00000598355 DEPDC5O75140 1603 aa25.01■■□□□ 1.59
TRIM28-213ENST00000598355 ERBINQ96RT1 1412 aa25■■□□□ 1.59
TRIM28-213ENST00000598355 KIF15Q9NS87 1388 aa24.99■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms