RNA–Protein interactions for RNA: ENST00000598020.3

PNKP-211, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 534 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-211ENST00000598020 CDC42BPAQ5VT25 1732 aa31.86■■■□□ 2.69
PNKP-211ENST00000598020 CDC42BPBQ9Y5S2 1711 aa31.86■■■□□ 2.69
PNKP-211ENST00000598020 GPATCH8Q9UKJ3 1502 aaKnown RBP31.85■■■□□ 2.69
PNKP-211ENST00000598020 AKNAQ7Z591 1439 aa31.85■■■□□ 2.69
PNKP-211ENST00000598020 NCOA2Q15596 1464 aa31.84■■■□□ 2.69
PNKP-211ENST00000598020 CCNB3Q8WWL7 1395 aa31.83■■■□□ 2.69
PNKP-211ENST00000598020 ARHGAP5Q13017 1502 aa31.83■■■□□ 2.69
PNKP-211ENST00000598020 ITSN2Q9NZM3 1697 aa31.74■■■□□ 2.67
PNKP-211ENST00000598020 ADGRL1O94910 1474 aa31.74■■■□□ 2.67
PNKP-211ENST00000598020 CFDP1Q9UEE9 299 aaPredicted RBP31.73■■■□□ 2.67
PNKP-211ENST00000598020 DENND4BO75064 1496 aaPredicted RBP31.72■■■□□ 2.67
PNKP-211ENST00000598020 SCAPERQ9BY12 1400 aa31.7■■■□□ 2.67
PNKP-211ENST00000598020 RAPGEF3O95398 923 aa31.67■■■□□ 2.66
PNKP-211ENST00000598020 RICTORQ6R327 1708 aa31.66■■■□□ 2.66
PNKP-211ENST00000598020 ABCC1P33527 1531 aa31.65■■■□□ 2.66
PNKP-211ENST00000598020 FRMPD1Q5SYB0 1578 aa31.65■■■□□ 2.66
PNKP-211ENST00000598020 SAMD9LQ8IVG5 1584 aa31.65■■■□□ 2.66
PNKP-211ENST00000598020 POGZQ7Z3K3 1410 aa31.64■■■□□ 2.66
PNKP-211ENST00000598020 KIAA1107Q9UPP5 1409 aa31.63■■■□□ 2.65
PNKP-211ENST00000598020 PLEKHH2Q8IVE3 1493 aa31.63■■■□□ 2.65
PNKP-211ENST00000598020 MYOM3Q5VTT5 1437 aa31.62■■■□□ 2.65
PNKP-211ENST00000598020 ZNF777Q9ULD5 760 aaPredicted RBP31.62■■■□□ 2.65
PNKP-211ENST00000598020 ARHGEF12Q9NZN5 1544 aa31.6■■■□□ 2.65
PNKP-211ENST00000598020 MIA2Q96PC5 1412 aa31.59■■■□□ 2.65
PNKP-211ENST00000598020 ZMYM4Q5VZL5 1548 aa31.58■■■□□ 2.65
PNKP-211ENST00000598020 ZNF518AQ6AHZ1 1483 aa31.58■■■□□ 2.65
PNKP-211ENST00000598020 ZNF644Q9H582 1327 aaPredicted RBP31.54■■■□□ 2.64
PNKP-211ENST00000598020 SYCP2Q9BX26 1530 aa31.54■■■□□ 2.64
PNKP-211ENST00000598020 KDM5CP41229 1560 aa31.53■■■□□ 2.64
PNKP-211ENST00000598020 TRAPPC8Q9Y2L5 1435 aa31.53■■■□□ 2.64
PNKP-211ENST00000598020 MAGI2Q86UL8 1455 aa31.52■■■□□ 2.64
PNKP-211ENST00000598020 AFAP1Q8N556 730 aa31.51■■■□□ 2.63
PNKP-211ENST00000598020 CAMSAP2Q08AD1 1489 aa31.51■■■□□ 2.63
PNKP-211ENST00000598020 HNRNPMP52272 730 aaKnown RBP eCLIP31.5■■■□□ 2.63
PNKP-211ENST00000598020 MBD5Q9P267 1494 aa31.5■■■□□ 2.63
PNKP-211ENST00000598020 FGD6Q6ZV73 1430 aa31.46■■■□□ 2.63
PNKP-211ENST00000598020 RSPH4AQ5TD94 716 aa31.45■■■□□ 2.63
PNKP-211ENST00000598020 MLH3Q9UHC1 1453 aa31.45■■■□□ 2.62
PNKP-211ENST00000598020 ZFYVE16Q7Z3T8 1539 aa31.42■■■□□ 2.62
PNKP-211ENST00000598020 ARHGEF40Q8TER5 1519 aa31.42■■■□□ 2.62
PNKP-211ENST00000598020 TCOF1Q13428 1488 aaKnown RBP31.41■■■□□ 2.62
PNKP-211ENST00000598020 PPARGC1BQ86YN6 1023 aaKnown RBP31.41■■■□□ 2.62
PNKP-211ENST00000598020 ARHGEF5Q12774 1597 aa31.41■■■□□ 2.62
PNKP-211ENST00000598020 HECW2Q9P2P5 1572 aa31.41■■■□□ 2.62
PNKP-211ENST00000598020 PTPN23Q9H3S7 1636 aa31.41■■■□□ 2.62
PNKP-211ENST00000598020 YEATS2Q9ULM3 1422 aa31.39■■■□□ 2.62
PNKP-211ENST00000598020 CCDC141Q6ZP82 1450 aa31.38■■■□□ 2.61
PNKP-211ENST00000598020 SPAG9O60271 1321 aaKnown RBP31.36■■■□□ 2.61
PNKP-211ENST00000598020 KIDINS220Q9ULH0 1771 aa31.34■■■□□ 2.61
PNKP-211ENST00000598020 INO80Q9ULG1 1556 aaPredicted RBP31.32■■■□□ 2.6
PNKP-211ENST00000598020 ATP10AO60312 1499 aa31.32■■■□□ 2.6
PNKP-211ENST00000598020 RTEL1-TNFRSF6BF6WH68 1400 aa31.32■■■□□ 2.6
PNKP-211ENST00000598020 ATP7AQ04656 1500 aa31.29■■■□□ 2.6
PNKP-211ENST00000598020 MYT1LQ9UL68 1186 aa31.29■■■□□ 2.6
PNKP-211ENST00000598020 DIP2CQ9Y2E4 1556 aa31.29■■■□□ 2.6
PNKP-211ENST00000598020 ABCA6Q8N139 1617 aa31.27■■■□□ 2.6
PNKP-211ENST00000598020 C9orf84Q5VXU9 1444 aa31.26■■■□□ 2.6
PNKP-211ENST00000598020 TSPY4P0CV99 314 aa31.26■■■□□ 2.59
PNKP-211ENST00000598020 TSPY10P0CW01 314 aa31.26■■■□□ 2.59
PNKP-211ENST00000598020 REREQ9P2R6 1566 aa31.26■■■□□ 2.59
PNKP-211ENST00000598020 MAST1Q9Y2H9 1570 aa31.24■■■□□ 2.59
PNKP-211ENST00000598020 DNMT1P26358 1616 aaKnown RBP31.24■■■□□ 2.59
PNKP-211ENST00000598020 ABCC5O15440 1437 aa31.24■■■□□ 2.59
PNKP-211ENST00000598020 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.23■■■□□ 2.59
PNKP-211ENST00000598020 DAPK1P53355 1430 aa31.21■■■□□ 2.59
PNKP-211ENST00000598020 SHANK2Q9UPX8 1470 aa31.21■■■□□ 2.59
PNKP-211ENST00000598020 FAM50AQ14320 339 aaKnown RBP31.2■■■□□ 2.59
PNKP-211ENST00000598020 RRBP1Q9P2E9 1410 aaKnown RBP31.2■■■□□ 2.59
PNKP-211ENST00000598020 CROCC2H7BZ55 1655 aa31.19■■■□□ 2.58
PNKP-211ENST00000598020 SIGLEC1Q9BZZ2 1709 aa31.18■■■□□ 2.58
PNKP-211ENST00000598020 ADGBQ8N7X0 1667 aa31.16■■■□□ 2.58
PNKP-211ENST00000598020 AGLP35573 1532 aa31.15■■■□□ 2.58
PNKP-211ENST00000598020 ARID4BQ4LE39 1312 aaPredicted RBP31.13■■■□□ 2.57
PNKP-211ENST00000598020 A2MP01023 1474 aa31.13■■■□□ 2.57
PNKP-211ENST00000598020 PLXNC1O60486 1568 aa31.11■■■□□ 2.57
PNKP-211ENST00000598020 BCORL1Q5H9F3 1711 aa31.1■■■□□ 2.57
PNKP-211ENST00000598020 DHX29Q7Z478 1369 aaKnown RBP31.09■■■□□ 2.57
PNKP-211ENST00000598020 KDM4FA0A1W2PPD8 638 aa31.09■■■□□ 2.57
PNKP-211ENST00000598020 ADAMTSL3P82987 1691 aa31.05■■■□□ 2.56
PNKP-211ENST00000598020 ADGRL2O95490 1459 aa31.04■■■□□ 2.56
PNKP-211ENST00000598020 PTPRKQ15262 1439 aa31.02■■■□□ 2.56
PNKP-211ENST00000598020 ANKRD30AQ9BXX3 1397 aa31.02■■■□□ 2.56
PNKP-211ENST00000598020 NCOA1Q15788 1441 aa31.01■■■□□ 2.55
PNKP-211ENST00000598020 CHIC2Q9UKJ5 165 aa30.99■■■□□ 2.55
PNKP-211ENST00000598020 DUOX2Q9NRD8 1548 aa30.98■■■□□ 2.55
PNKP-211ENST00000598020 KIF15Q9NS87 1388 aa30.98■■■□□ 2.55
PNKP-211ENST00000598020 ROCK1Q13464 1354 aa30.96■■■□□ 2.55
PNKP-211ENST00000598020 MLECQ14165 292 aa30.95■■■□□ 2.55
PNKP-211ENST00000598020 RRP7BPQ9NSQ0 103 aa30.95■■■□□ 2.55
PNKP-211ENST00000598020 MADDQ8WXG6 1647 aa30.92■■■□□ 2.54
PNKP-211ENST00000598020 EIF2AK4Q9P2K8 1649 aaKnown RBP30.92■■■□□ 2.54
PNKP-211ENST00000598020 ERBINQ96RT1 1412 aa30.91■■■□□ 2.54
PNKP-211ENST00000598020 PPP6R1Q9UPN7 881 aa30.9■■■□□ 2.54
PNKP-211ENST00000598020 KIF3BO15066 747 aa30.89■■■□□ 2.54
PNKP-211ENST00000598020 ITGAEP38570 1179 aa30.89■■■□□ 2.54
PNKP-211ENST00000598020 FER1L4A9Z1Z3 1794 aa30.87■■■□□ 2.53
PNKP-211ENST00000598020 GGT6Q6P531 493 aa30.84■■■□□ 2.53
PNKP-211ENST00000598020 RNF17Q9BXT8 1623 aaKnown RBP30.84■■■□□ 2.53
PNKP-211ENST00000598020 RIMS1Q86UR5 1692 aaKnown RBP30.83■■■□□ 2.53
PNKP-211ENST00000598020 PTPRMP28827 1452 aa30.82■■■□□ 2.53
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms