RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 POGZQ7Z3K3 1410 aa17.12■□□□□ 0.33
LIG1-213ENST00000596672 HECW2Q9P2P5 1572 aa17.11■□□□□ 0.33
LIG1-213ENST00000596672 FYCO1Q9BQS8 1478 aa17.11■□□□□ 0.33
LIG1-213ENST00000596672 ARHGEF12Q9NZN5 1544 aa17.11■□□□□ 0.33
LIG1-213ENST00000596672 CDK11AQ9UQ88 783 aaPredicted RBP17.1■□□□□ 0.33
LIG1-213ENST00000596672 MADDQ8WXG6 1647 aa17.1■□□□□ 0.33
LIG1-213ENST00000596672 EFCAB2Q5VUJ9 269 aa17.09■□□□□ 0.33
LIG1-213ENST00000596672 ZFYVE16Q7Z3T8 1539 aa17.08■□□□□ 0.32
LIG1-213ENST00000596672 PTPRMP28827 1452 aa17.08■□□□□ 0.32
LIG1-213ENST00000596672 CCDC18Q5T9S5 1454 aa17.07■□□□□ 0.32
LIG1-213ENST00000596672 LOC105371045A0A1W2PR82 267 aa17.07■□□□□ 0.32
LIG1-213ENST00000596672 AFAP1Q8N556 730 aa17.07■□□□□ 0.32
LIG1-213ENST00000596672 CDC42BPAQ5VT25 1732 aa17.07■□□□□ 0.32
LIG1-213ENST00000596672 ARHGAP5Q13017 1502 aa17.06■□□□□ 0.32
LIG1-213ENST00000596672 PREX2Q70Z35 1606 aa17.06■□□□□ 0.32
LIG1-213ENST00000596672 ARID4BQ4LE39 1312 aaPredicted RBP17.04■□□□□ 0.32
LIG1-213ENST00000596672 MAGI2Q86UL8 1455 aa17.04■□□□□ 0.32
LIG1-213ENST00000596672 CEP162Q5TB80 1403 aa17.04■□□□□ 0.32
LIG1-213ENST00000596672 TRAPPC8Q9Y2L5 1435 aa17.04■□□□□ 0.32
LIG1-213ENST00000596672 KDM5CP41229 1560 aa17.03■□□□□ 0.32
LIG1-213ENST00000596672 RIMS1Q86UR5 1692 aaKnown RBP17.02■□□□□ 0.32
LIG1-213ENST00000596672 GPATCH8Q9UKJ3 1502 aaKnown RBP17.01■□□□□ 0.31
LIG1-213ENST00000596672 ABCC1P33527 1531 aa17.01■□□□□ 0.31
LIG1-213ENST00000596672 ATP10AO60312 1499 aa16.99■□□□□ 0.31
LIG1-213ENST00000596672 ITSN2Q9NZM3 1697 aa16.99■□□□□ 0.31
LIG1-213ENST00000596672 SAMD9LQ8IVG5 1584 aa16.98■□□□□ 0.31
LIG1-213ENST00000596672 DIP2CQ9Y2E4 1556 aa16.98■□□□□ 0.31
LIG1-213ENST00000596672 MLECQ14165 292 aa16.98■□□□□ 0.31
LIG1-213ENST00000596672 ZNF518AQ6AHZ1 1483 aa16.98■□□□□ 0.31
LIG1-213ENST00000596672 ABCA6Q8N139 1617 aa16.97■□□□□ 0.31
LIG1-213ENST00000596672 KIDINS220Q9ULH0 1771 aa16.95■□□□□ 0.3
LIG1-213ENST00000596672 MLH3Q9UHC1 1453 aa16.95■□□□□ 0.3
LIG1-213ENST00000596672 C9orf84Q5VXU9 1444 aa16.95■□□□□ 0.3
LIG1-213ENST00000596672 LMTK3Q96Q04 1460 aa16.93■□□□□ 0.3
LIG1-213ENST00000596672 FER1L4A9Z1Z3 1794 aa16.93■□□□□ 0.3
LIG1-213ENST00000596672 ZNF644Q9H582 1327 aaPredicted RBP16.93■□□□□ 0.3
LIG1-213ENST00000596672 HNRNPMP52272 730 aaKnown RBP eCLIP16.92■□□□□ 0.3
LIG1-213ENST00000596672 ZNF777Q9ULD5 760 aaPredicted RBP16.92■□□□□ 0.3
LIG1-213ENST00000596672 SYCP2Q9BX26 1530 aa16.91■□□□□ 0.3
LIG1-213ENST00000596672 TIAM1Q13009 1591 aa16.91■□□□□ 0.3
LIG1-213ENST00000596672 PLPPR3Q6T4P5 718 aa16.91■□□□□ 0.3
LIG1-213ENST00000596672 REREQ9P2R6 1566 aa16.89■□□□□ 0.3
LIG1-213ENST00000596672 CEBPAP49715 358 aaPredicted RBP16.89■□□□□ 0.29
LIG1-213ENST00000596672 MTUS2Q5JR59 1369 aa16.89■□□□□ 0.29
LIG1-213ENST00000596672 CCNB3Q8WWL7 1395 aa16.87■□□□□ 0.29
LIG1-213ENST00000596672 EHBP1L1Q8N3D4 1523 aa16.86■□□□□ 0.29
LIG1-213ENST00000596672 HSPA2P54652 639 aa16.86■□□□□ 0.29
LIG1-213ENST00000596672 CFDP1Q9UEE9 299 aaPredicted RBP16.86■□□□□ 0.29
LIG1-213ENST00000596672 KIAA1107Q9UPP5 1409 aa16.85■□□□□ 0.29
LIG1-213ENST00000596672 MBD5Q9P267 1494 aa16.85■□□□□ 0.29
LIG1-213ENST00000596672 AGLP35573 1532 aa16.85■□□□□ 0.29
LIG1-213ENST00000596672 ILDR1Q86SU0 546 aaPredicted RBP16.84■□□□□ 0.29
LIG1-213ENST00000596672 VPS8Q8N3P4 1428 aa16.83■□□□□ 0.28
LIG1-213ENST00000596672 MYT1LQ9UL68 1186 aa16.83■□□□□ 0.28
LIG1-213ENST00000596672 INO80Q9ULG1 1556 aaPredicted RBP16.83■□□□□ 0.28
LIG1-213ENST00000596672 NCOA2Q15596 1464 aa16.82■□□□□ 0.28
LIG1-213ENST00000596672 KANK4Q5T7N3 995 aaPredicted RBP16.82■□□□□ 0.28
LIG1-213ENST00000596672 SPAG9O60271 1321 aaKnown RBP16.81■□□□□ 0.28
LIG1-213ENST00000596672 ATP7AQ04656 1500 aa16.8■□□□□ 0.28
LIG1-213ENST00000596672 SUPT6HQ7KZ85 1726 aaKnown RBP16.79■□□□□ 0.28
LIG1-213ENST00000596672 C3P01024 1663 aa16.79■□□□□ 0.28
LIG1-213ENST00000596672 PLXNC1O60486 1568 aa16.78■□□□□ 0.28
LIG1-213ENST00000596672 PLEKHH2Q8IVE3 1493 aa16.78■□□□□ 0.28
LIG1-213ENST00000596672 LRRC9Q6ZRR7 1453 aa16.77■□□□□ 0.28
LIG1-213ENST00000596672 SETD1BQ9UPS6 1966 aaKnown RBP16.77■□□□□ 0.27
LIG1-213ENST00000596672 A2MP01023 1474 aa16.74■□□□□ 0.27
LIG1-213ENST00000596672 CAMSAP2Q08AD1 1489 aa16.74■□□□□ 0.27
LIG1-213ENST00000596672 PREX1Q8TCU6 1659 aa16.73■□□□□ 0.27
LIG1-213ENST00000596672 ADGBQ8N7X0 1667 aa16.72■□□□□ 0.27
LIG1-213ENST00000596672 STRCQ7RTU9 1775 aa16.72■□□□□ 0.27
LIG1-213ENST00000596672 MAP3K1Q13233 1512 aa16.7■□□□□ 0.26
LIG1-213ENST00000596672 RTEL1-TNFRSF6BF6WH68 1400 aa16.69■□□□□ 0.26
LIG1-213ENST00000596672 CLTCQ00610 1675 aaKnown RBP16.69■□□□□ 0.26
LIG1-213ENST00000596672 CCDC141Q6ZP82 1450 aa16.67■□□□□ 0.26
LIG1-213ENST00000596672 ZMYM3Q14202 1370 aa16.67■□□□□ 0.26
LIG1-213ENST00000596672 DHX29Q7Z478 1369 aaKnown RBP16.66■□□□□ 0.26
LIG1-213ENST00000596672 MROH2AA6NES4 1674 aa16.66■□□□□ 0.26
LIG1-213ENST00000596672 ARHGEF5Q12774 1597 aa16.66■□□□□ 0.26
LIG1-213ENST00000596672 GGT6Q6P531 493 aa16.66■□□□□ 0.26
LIG1-213ENST00000596672 CNTLNQ9NXG0 1405 aa16.64■□□□□ 0.25
LIG1-213ENST00000596672 UHRF1BP1Q6BDS2 1440 aa16.63■□□□□ 0.25
LIG1-213ENST00000596672 PTPRKQ15262 1439 aa16.62■□□□□ 0.25
LIG1-213ENST00000596672 MYOM3Q5VTT5 1437 aa16.62■□□□□ 0.25
LIG1-213ENST00000596672 NPATQ14207 1427 aa16.6■□□□□ 0.25
LIG1-213ENST00000596672 KIF3BO15066 747 aa16.59■□□□□ 0.25
LIG1-213ENST00000596672 ESF1Q9H501 851 aaKnown RBP16.59■□□□□ 0.25
LIG1-213ENST00000596672 MAST1Q9Y2H9 1570 aa16.59■□□□□ 0.25
LIG1-213ENST00000596672 RSPH4AQ5TD94 716 aa16.58■□□□□ 0.24
LIG1-213ENST00000596672 MIA2Q96PC5 1412 aa16.58■□□□□ 0.24
LIG1-213ENST00000596672 FBXO31Q5XUX0 539 aaPredicted RBP16.57■□□□□ 0.24
LIG1-213ENST00000596672 NCOA1Q15788 1441 aa16.56■□□□□ 0.24
LIG1-213ENST00000596672 FBXO41Q8TF61 875 aa16.56■□□□□ 0.24
LIG1-213ENST00000596672 MYO3AQ8NEV4 1616 aa16.56■□□□□ 0.24
LIG1-213ENST00000596672 ABCC5O15440 1437 aa16.55■□□□□ 0.24
LIG1-213ENST00000596672 MROH1Q8NDA8 1641 aa16.55■□□□□ 0.24
LIG1-213ENST00000596672 PPP6R1Q9UPN7 881 aa16.54■□□□□ 0.24
LIG1-213ENST00000596672 CAMSAP1Q5T5Y3 1602 aa16.54■□□□□ 0.24
LIG1-213ENST00000596672 PTPN23Q9H3S7 1636 aa16.53■□□□□ 0.24
LIG1-213ENST00000596672 TSPY4P0CV99 314 aa16.53■□□□□ 0.24
LIG1-213ENST00000596672 TSPY10P0CW01 314 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms