RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 GLI2P10070 1586 aa22.39■■□□□ 1.18
SHKBP1-211ENST00000595945 CFDP1Q9UEE9 299 aaPredicted RBP22.39■■□□□ 1.17
SHKBP1-211ENST00000595945 CAMSAP2Q08AD1 1489 aa22.39■■□□□ 1.17
SHKBP1-211ENST00000595945 FAM50AQ14320 339 aaKnown RBP22.38■■□□□ 1.17
SHKBP1-211ENST00000595945 SAMD9LQ8IVG5 1584 aa22.37■■□□□ 1.17
SHKBP1-211ENST00000595945 DNMT1P26358 1616 aaKnown RBP22.36■■□□□ 1.17
SHKBP1-211ENST00000595945 ARHGAP5Q13017 1502 aa22.35■■□□□ 1.17
SHKBP1-211ENST00000595945 DIP2BQ9P265 1576 aa22.34■■□□□ 1.17
SHKBP1-211ENST00000595945 ZNF644Q9H582 1327 aaPredicted RBP22.33■■□□□ 1.17
SHKBP1-211ENST00000595945 MAP3K4Q9Y6R4 1608 aa22.32■■□□□ 1.16
SHKBP1-211ENST00000595945 CROCC2H7BZ55 1655 aa22.31■■□□□ 1.16
SHKBP1-211ENST00000595945 PTPRKQ15262 1439 aa22.31■■□□□ 1.16
SHKBP1-211ENST00000595945 ARHGEF5Q12774 1597 aa22.3■■□□□ 1.16
SHKBP1-211ENST00000595945 KIF13AQ9H1H9 1805 aa22.29■■□□□ 1.16
SHKBP1-211ENST00000595945 ABCC5O15440 1437 aa22.28■■□□□ 1.16
SHKBP1-211ENST00000595945 DAPK1P53355 1430 aa22.28■■□□□ 1.16
SHKBP1-211ENST00000595945 PLEKHH2Q8IVE3 1493 aa22.28■■□□□ 1.16
SHKBP1-211ENST00000595945 CD109Q6YHK3 1445 aa22.27■■□□□ 1.16
SHKBP1-211ENST00000595945 MBD5Q9P267 1494 aa22.27■■□□□ 1.16
SHKBP1-211ENST00000595945 ABCC1P33527 1531 aa22.26■■□□□ 1.15
SHKBP1-211ENST00000595945 KIAA1107Q9UPP5 1409 aa22.26■■□□□ 1.15
SHKBP1-211ENST00000595945 EFCAB2Q5VUJ9 269 aa22.26■■□□□ 1.15
SHKBP1-211ENST00000595945 ZNF777Q9ULD5 760 aaPredicted RBP22.26■■□□□ 1.15
SHKBP1-211ENST00000595945 CFAP74Q9C0B2 1584 aa22.25■■□□□ 1.15
SHKBP1-211ENST00000595945 ITGAEP38570 1179 aa22.24■■□□□ 1.15
SHKBP1-211ENST00000595945 SYCP2Q9BX26 1530 aa22.24■■□□□ 1.15
SHKBP1-211ENST00000595945 FANCAO15360 1455 aa22.23■■□□□ 1.15
SHKBP1-211ENST00000595945 ARHGEF12Q9NZN5 1544 aa22.23■■□□□ 1.15
SHKBP1-211ENST00000595945 ADGBQ8N7X0 1667 aa22.23■■□□□ 1.15
SHKBP1-211ENST00000595945 SHANK2Q9UPX8 1470 aa22.22■■□□□ 1.15
SHKBP1-211ENST00000595945 PPRC1Q5VV67 1664 aaKnown RBP22.21■■□□□ 1.15
SHKBP1-211ENST00000595945 AKNAQ7Z591 1439 aa22.21■■□□□ 1.15
SHKBP1-211ENST00000595945 CCDC141Q6ZP82 1450 aa22.2■■□□□ 1.14
SHKBP1-211ENST00000595945 GCC2Q8IWJ2 1684 aa22.19■■□□□ 1.14
SHKBP1-211ENST00000595945 MAST1Q9Y2H9 1570 aa22.18■■□□□ 1.14
SHKBP1-211ENST00000595945 ADGRL2O95490 1459 aa22.18■■□□□ 1.14
SHKBP1-211ENST00000595945 NEO1Q92859 1461 aa22.17■■□□□ 1.14
SHKBP1-211ENST00000595945 ROCK1Q13464 1354 aa22.17■■□□□ 1.14
SHKBP1-211ENST00000595945 HNRNPMP52272 730 aaKnown RBP eCLIP22.17■■□□□ 1.14
SHKBP1-211ENST00000595945 FAM69CQ0P6D2 419 aa22.17■■□□□ 1.14
SHKBP1-211ENST00000595945 RSPH4AQ5TD94 716 aa22.17■■□□□ 1.14
SHKBP1-211ENST00000595945 HFM1A2PYH4 1435 aa22.16■■□□□ 1.14
SHKBP1-211ENST00000595945 TSPOAP1O95153 1857 aa22.15■■□□□ 1.14
SHKBP1-211ENST00000595945 SETD5Q9C0A6 1442 aa22.14■■□□□ 1.14
SHKBP1-211ENST00000595945 ADGRL1O94910 1474 aa22.14■■□□□ 1.13
SHKBP1-211ENST00000595945 NAIPQ13075 1403 aa22.13■■□□□ 1.13
SHKBP1-211ENST00000595945 C9orf84Q5VXU9 1444 aa22.13■■□□□ 1.13
SHKBP1-211ENST00000595945 TRAPPC8Q9Y2L5 1435 aa22.12■■□□□ 1.13
SHKBP1-211ENST00000595945 NCOA1Q15788 1441 aa22.1■■□□□ 1.13
SHKBP1-211ENST00000595945 CHIC2Q9UKJ5 165 aa22.1■■□□□ 1.13
SHKBP1-211ENST00000595945 SCAPERQ9BY12 1400 aa22.09■■□□□ 1.13
SHKBP1-211ENST00000595945 RAB3GAP2Q9H2M9 1393 aa22.08■■□□□ 1.12
SHKBP1-211ENST00000595945 TEX14Q8IWB6 1497 aa22.08■■□□□ 1.12
SHKBP1-211ENST00000595945 PLXNC1O60486 1568 aa22.08■■□□□ 1.12
SHKBP1-211ENST00000595945 HRCP23327 699 aa22.07■■□□□ 1.12
SHKBP1-211ENST00000595945 TSPY4P0CV99 314 aa22.06■■□□□ 1.12
SHKBP1-211ENST00000595945 TSPY10P0CW01 314 aa22.06■■□□□ 1.12
SHKBP1-211ENST00000595945 INO80Q9ULG1 1556 aaPredicted RBP22.06■■□□□ 1.12
SHKBP1-211ENST00000595945 ANKRD30AQ9BXX3 1397 aa22.05■■□□□ 1.12
SHKBP1-211ENST00000595945 KDM5CP41229 1560 aa22.04■■□□□ 1.12
SHKBP1-211ENST00000595945 RICTORQ6R327 1708 aa22.04■■□□□ 1.12
SHKBP1-211ENST00000595945 RRP7BPQ9NSQ0 103 aa22.04■■□□□ 1.12
SHKBP1-211ENST00000595945 KDM6BO15054 1643 aa22.04■■□□□ 1.12
SHKBP1-211ENST00000595945 ZFYVE16Q7Z3T8 1539 aa22.04■■□□□ 1.12
SHKBP1-211ENST00000595945 POGZQ7Z3K3 1410 aa22.04■■□□□ 1.12
SHKBP1-211ENST00000595945 RTEL1-TNFRSF6BF6WH68 1400 aa22.03■■□□□ 1.12
SHKBP1-211ENST00000595945 ZNF518AQ6AHZ1 1483 aa22.02■■□□□ 1.12
SHKBP1-211ENST00000595945 DENND4BO75064 1496 aaPredicted RBP22.01■■□□□ 1.11
SHKBP1-211ENST00000595945 KIDINS220Q9ULH0 1771 aa22■■□□□ 1.11
SHKBP1-211ENST00000595945 ATP7AQ04656 1500 aa22■■□□□ 1.11
SHKBP1-211ENST00000595945 AFAP1Q8N556 730 aa21.99■■□□□ 1.11
SHKBP1-211ENST00000595945 FRMPD1Q5SYB0 1578 aa21.99■■□□□ 1.11
SHKBP1-211ENST00000595945 SPAG9O60271 1321 aaKnown RBP21.97■■□□□ 1.11
SHKBP1-211ENST00000595945 KIF15Q9NS87 1388 aa21.97■■□□□ 1.11
SHKBP1-211ENST00000595945 MLH3Q9UHC1 1453 aa21.96■■□□□ 1.11
SHKBP1-211ENST00000595945 HECW2Q9P2P5 1572 aa21.95■■□□□ 1.11
SHKBP1-211ENST00000595945 DUOX2Q9NRD8 1548 aa21.95■■□□□ 1.1
SHKBP1-211ENST00000595945 ZMYM4Q5VZL5 1548 aa21.93■■□□□ 1.1
SHKBP1-211ENST00000595945 ANKRD50Q9ULJ7 1429 aa21.93■■□□□ 1.1
SHKBP1-211ENST00000595945 DHX57Q6P158 1386 aaKnown RBP21.92■■□□□ 1.1
SHKBP1-211ENST00000595945 ACIN1Q9UKV3 1341 aaKnown RBP21.9■■□□□ 1.1
SHKBP1-211ENST00000595945 ABCA6Q8N139 1617 aa21.88■■□□□ 1.09
SHKBP1-211ENST00000595945 RAPGEF3O95398 923 aa21.88■■□□□ 1.09
SHKBP1-211ENST00000595945 ERBINQ96RT1 1412 aa21.88■■□□□ 1.09
SHKBP1-211ENST00000595945 COL17A1Q9UMD9 1497 aaPredicted RBP21.87■■□□□ 1.09
SHKBP1-211ENST00000595945 UNC13BO14795 1591 aa21.86■■□□□ 1.09
SHKBP1-211ENST00000595945 EIF2AK4Q9P2K8 1649 aaKnown RBP21.85■■□□□ 1.09
SHKBP1-211ENST00000595945 DIP2CQ9Y2E4 1556 aa21.85■■□□□ 1.09
SHKBP1-211ENST00000595945 KDM5DQ9BY66 1539 aa21.85■■□□□ 1.09
SHKBP1-211ENST00000595945 CCER1Q8TC90 406 aaPredicted RBP21.84■■□□□ 1.09
SHKBP1-211ENST00000595945 TRHP20396 242 aaPredicted RBP21.83■■□□□ 1.09
SHKBP1-211ENST00000595945 MAGI2Q86UL8 1455 aa21.83■■□□□ 1.08
SHKBP1-211ENST00000595945 BCORL1Q5H9F3 1711 aa21.82■■□□□ 1.08
SHKBP1-211ENST00000595945 DHX29Q7Z478 1369 aaKnown RBP21.82■■□□□ 1.08
SHKBP1-211ENST00000595945 DEPDC5O75140 1603 aa21.8■■□□□ 1.08
SHKBP1-211ENST00000595945 A2MP01023 1474 aa21.79■■□□□ 1.08
SHKBP1-211ENST00000595945 PZPP20742 1482 aa21.79■■□□□ 1.08
SHKBP1-211ENST00000595945 CLSPNQ9HAW4 1339 aa21.79■■□□□ 1.08
SHKBP1-211ENST00000595945 YEATS2Q9ULM3 1422 aa21.78■■□□□ 1.08
SHKBP1-211ENST00000595945 TRIM52Q96A61 297 aa21.76■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms