RNA–Protein interactions for RNA: ENST00000595792.1

PNKP-206, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 2

Gene PNKP, Length 645 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-206ENST00000595792 ZFYVE16Q7Z3T8 1539 aa29.1■■■□□ 2.25
PNKP-206ENST00000595792 CDK11AQ9UQ88 783 aaPredicted RBP29.1■■■□□ 2.25
PNKP-206ENST00000595792 PTPRMP28827 1452 aa29.1■■■□□ 2.25
PNKP-206ENST00000595792 POGZQ7Z3K3 1410 aa29.09■■■□□ 2.25
PNKP-206ENST00000595792 CASKIN1Q8WXD9 1431 aa29.09■■■□□ 2.25
PNKP-206ENST00000595792 CLIP1P30622 1438 aa29.07■■■□□ 2.24
PNKP-206ENST00000595792 ARHGAP5Q13017 1502 aa29.04■■■□□ 2.24
PNKP-206ENST00000595792 CCDC18Q5T9S5 1454 aa29.04■■■□□ 2.24
PNKP-206ENST00000595792 RIMS1Q86UR5 1692 aaKnown RBP29.02■■■□□ 2.24
PNKP-206ENST00000595792 EFCAB2Q5VUJ9 269 aa29.02■■■□□ 2.24
PNKP-206ENST00000595792 MAGI2Q86UL8 1455 aa29■■■□□ 2.23
PNKP-206ENST00000595792 FYCO1Q9BQS8 1478 aa29■■■□□ 2.23
PNKP-206ENST00000595792 CDC42BPBQ9Y5S2 1711 aa29■■■□□ 2.23
PNKP-206ENST00000595792 PREX2Q70Z35 1606 aa28.97■■■□□ 2.23
PNKP-206ENST00000595792 KDM5CP41229 1560 aa28.92■■■□□ 2.22
PNKP-206ENST00000595792 ZNF518AQ6AHZ1 1483 aa28.91■■■□□ 2.22
PNKP-206ENST00000595792 MLECQ14165 292 aa28.9■■■□□ 2.22
PNKP-206ENST00000595792 CDC42BPAQ5VT25 1732 aa28.9■■■□□ 2.22
PNKP-206ENST00000595792 AFAP1Q8N556 730 aa28.88■■■□□ 2.21
PNKP-206ENST00000595792 ATP10AO60312 1499 aa28.88■■■□□ 2.21
PNKP-206ENST00000595792 ABCC1P33527 1531 aa28.88■■■□□ 2.21
PNKP-206ENST00000595792 FER1L4A9Z1Z3 1794 aa28.88■■■□□ 2.21
PNKP-206ENST00000595792 C9orf84Q5VXU9 1444 aa28.87■■■□□ 2.21
PNKP-206ENST00000595792 PLPPR3Q6T4P5 718 aa28.87■■■□□ 2.21
PNKP-206ENST00000595792 ARHGEF12Q9NZN5 1544 aa28.86■■■□□ 2.21
PNKP-206ENST00000595792 ITSN2Q9NZM3 1697 aa28.86■■■□□ 2.21
PNKP-206ENST00000595792 DIP2CQ9Y2E4 1556 aa28.84■■■□□ 2.21
PNKP-206ENST00000595792 TRAPPC8Q9Y2L5 1435 aa28.83■■■□□ 2.21
PNKP-206ENST00000595792 LMTK3Q96Q04 1460 aa28.83■■■□□ 2.21
PNKP-206ENST00000595792 ABCA6Q8N139 1617 aa28.82■■■□□ 2.2
PNKP-206ENST00000595792 CEP162Q5TB80 1403 aa28.81■■■□□ 2.2
PNKP-206ENST00000595792 MYT1LQ9UL68 1186 aa28.78■■■□□ 2.2
PNKP-206ENST00000595792 SAMD9LQ8IVG5 1584 aa28.78■■■□□ 2.2
PNKP-206ENST00000595792 LOC105371045A0A1W2PR82 267 aa28.77■■■□□ 2.2
PNKP-206ENST00000595792 ILDR1Q86SU0 546 aaPredicted RBP28.77■■■□□ 2.2
PNKP-206ENST00000595792 GPATCH8Q9UKJ3 1502 aaKnown RBP28.75■■■□□ 2.19
PNKP-206ENST00000595792 MLH3Q9UHC1 1453 aa28.75■■■□□ 2.19
PNKP-206ENST00000595792 ZNF777Q9ULD5 760 aaPredicted RBP28.73■■■□□ 2.19
PNKP-206ENST00000595792 SYCP2Q9BX26 1530 aa28.73■■■□□ 2.19
PNKP-206ENST00000595792 KIDINS220Q9ULH0 1771 aa28.72■■■□□ 2.19
PNKP-206ENST00000595792 REREQ9P2R6 1566 aa28.71■■■□□ 2.19
PNKP-206ENST00000595792 MTUS2Q5JR59 1369 aa28.69■■■□□ 2.18
PNKP-206ENST00000595792 HSPA2P54652 639 aa28.67■■■□□ 2.18
PNKP-206ENST00000595792 CEBPAP49715 358 aaPredicted RBP28.64■■■□□ 2.18
PNKP-206ENST00000595792 EHBP1L1Q8N3D4 1523 aa28.64■■■□□ 2.17
PNKP-206ENST00000595792 CCNB3Q8WWL7 1395 aa28.63■■■□□ 2.17
PNKP-206ENST00000595792 TIAM1Q13009 1591 aa28.63■■■□□ 2.17
PNKP-206ENST00000595792 HNRNPMP52272 730 aaKnown RBP eCLIP28.62■■■□□ 2.17
PNKP-206ENST00000595792 AGLP35573 1532 aa28.6■■■□□ 2.17
PNKP-206ENST00000595792 CFDP1Q9UEE9 299 aaPredicted RBP28.6■■■□□ 2.17
PNKP-206ENST00000595792 PREX1Q8TCU6 1659 aa28.58■■■□□ 2.16
PNKP-206ENST00000595792 INO80Q9ULG1 1556 aaPredicted RBP28.56■■■□□ 2.16
PNKP-206ENST00000595792 C3P01024 1663 aa28.55■■■□□ 2.16
PNKP-206ENST00000595792 ATP7AQ04656 1500 aa28.55■■■□□ 2.16
PNKP-206ENST00000595792 SPAG9O60271 1321 aaKnown RBP28.55■■■□□ 2.16
PNKP-206ENST00000595792 PLEKHH2Q8IVE3 1493 aa28.54■■■□□ 2.16
PNKP-206ENST00000595792 KIAA1107Q9UPP5 1409 aa28.54■■■□□ 2.16
PNKP-206ENST00000595792 ZNF644Q9H582 1327 aaPredicted RBP28.53■■■□□ 2.16
PNKP-206ENST00000595792 SUPT6HQ7KZ85 1726 aaKnown RBP28.52■■■□□ 2.16
PNKP-206ENST00000595792 VPS8Q8N3P4 1428 aa28.48■■■□□ 2.15
PNKP-206ENST00000595792 PLXNC1O60486 1568 aa28.47■■■□□ 2.15
PNKP-206ENST00000595792 NCOA2Q15596 1464 aa28.46■■■□□ 2.15
PNKP-206ENST00000595792 MBD5Q9P267 1494 aa28.44■■■□□ 2.14
PNKP-206ENST00000595792 UHRF1BP1Q6BDS2 1440 aa28.43■■■□□ 2.14
PNKP-206ENST00000595792 A2MP01023 1474 aa28.43■■■□□ 2.14
PNKP-206ENST00000595792 ESF1Q9H501 851 aaKnown RBP28.43■■■□□ 2.14
PNKP-206ENST00000595792 CAMSAP2Q08AD1 1489 aa28.39■■■□□ 2.13
PNKP-206ENST00000595792 MROH2AA6NES4 1674 aa28.38■■■□□ 2.13
PNKP-206ENST00000595792 ADGBQ8N7X0 1667 aa28.38■■■□□ 2.13
PNKP-206ENST00000595792 CNTLNQ9NXG0 1405 aa28.38■■■□□ 2.13
PNKP-206ENST00000595792 CLTCQ00610 1675 aaKnown RBP28.38■■■□□ 2.13
PNKP-206ENST00000595792 STRCQ7RTU9 1775 aa28.37■■■□□ 2.13
PNKP-206ENST00000595792 FBXO41Q8TF61 875 aa28.36■■■□□ 2.13
PNKP-206ENST00000595792 LRRC9Q6ZRR7 1453 aa28.34■■■□□ 2.13
PNKP-206ENST00000595792 SETD1BQ9UPS6 1966 aaKnown RBP28.34■■■□□ 2.13
PNKP-206ENST00000595792 CCDC141Q6ZP82 1450 aa28.32■■■□□ 2.12
PNKP-206ENST00000595792 ZMYM3Q14202 1370 aa28.3■■■□□ 2.12
PNKP-206ENST00000595792 RTEL1-TNFRSF6BF6WH68 1400 aa28.29■■■□□ 2.12
PNKP-206ENST00000595792 GGT6Q6P531 493 aa28.29■■■□□ 2.12
PNKP-206ENST00000595792 MAP3K1Q13233 1512 aa28.28■■■□□ 2.12
PNKP-206ENST00000595792 KANK4Q5T7N3 995 aaPredicted RBP28.27■■■□□ 2.12
PNKP-206ENST00000595792 NPATQ14207 1427 aa28.25■■■□□ 2.11
PNKP-206ENST00000595792 ARHGEF5Q12774 1597 aa28.24■■■□□ 2.11
PNKP-206ENST00000595792 MYO3AQ8NEV4 1616 aa28.22■■■□□ 2.11
PNKP-206ENST00000595792 DHX29Q7Z478 1369 aaKnown RBP28.22■■■□□ 2.11
PNKP-206ENST00000595792 PTPRKQ15262 1439 aa28.19■■■□□ 2.1
PNKP-206ENST00000595792 CERKQ8TCT0 537 aa28.18■■■□□ 2.1
PNKP-206ENST00000595792 CAMSAP1Q5T5Y3 1602 aa28.18■■■□□ 2.1
PNKP-206ENST00000595792 NCOA1Q15788 1441 aa28.18■■■□□ 2.1
PNKP-206ENST00000595792 ZNF142P52746 1687 aaPredicted RBP28.16■■■□□ 2.1
PNKP-206ENST00000595792 KIF3BO15066 747 aa28.14■■■□□ 2.1
PNKP-206ENST00000595792 CEP170BQ9Y4F5 1589 aaPredicted RBP28.13■■■□□ 2.09
PNKP-206ENST00000595792 MYOM3Q5VTT5 1437 aa28.13■■■□□ 2.09
PNKP-206ENST00000595792 DMRT2Q9Y5R5 561 aa28.13■■■□□ 2.09
PNKP-206ENST00000595792 PTPRTO14522 1441 aa28.12■■■□□ 2.09
PNKP-206ENST00000595792 RSPH4AQ5TD94 716 aa28.12■■■□□ 2.09
PNKP-206ENST00000595792 KDM5DQ9BY66 1539 aa28.11■■■□□ 2.09
PNKP-206ENST00000595792 MAST1Q9Y2H9 1570 aa28.11■■■□□ 2.09
PNKP-206ENST00000595792 PPP6R1Q9UPN7 881 aa28.09■■■□□ 2.09
PNKP-206ENST00000595792 TSPY4P0CV99 314 aa28.08■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms