RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 ARHGEF40Q8TER5 1519 aa28.4■■■□□ 2.14
SHKBP1-204ENST00000594862 POGZQ7Z3K3 1410 aa28.38■■■□□ 2.13
SHKBP1-204ENST00000594862 MAGI2Q86UL8 1455 aa28.38■■■□□ 2.13
SHKBP1-204ENST00000594862 SCAPERQ9BY12 1400 aa28.37■■■□□ 2.13
SHKBP1-204ENST00000594862 CDC42BPBQ9Y5S2 1711 aa28.34■■■□□ 2.13
SHKBP1-204ENST00000594862 ZFYVE16Q7Z3T8 1539 aa28.33■■■□□ 2.13
SHKBP1-204ENST00000594862 ILDR1Q86SU0 546 aaPredicted RBP28.32■■■□□ 2.12
SHKBP1-204ENST00000594862 MTUS2Q5JR59 1369 aa28.31■■■□□ 2.12
SHKBP1-204ENST00000594862 ZNF518AQ6AHZ1 1483 aa28.31■■■□□ 2.12
SHKBP1-204ENST00000594862 EHBP1L1Q8N3D4 1523 aa28.31■■■□□ 2.12
SHKBP1-204ENST00000594862 CDC42BPAQ5VT25 1732 aa28.31■■■□□ 2.12
SHKBP1-204ENST00000594862 HECW2Q9P2P5 1572 aa28.3■■■□□ 2.12
SHKBP1-204ENST00000594862 LOC105371045A0A1W2PR82 267 aa28.29■■■□□ 2.12
SHKBP1-204ENST00000594862 VPS8Q8N3P4 1428 aa28.26■■■□□ 2.12
SHKBP1-204ENST00000594862 ABCC1P33527 1531 aa28.26■■■□□ 2.11
SHKBP1-204ENST00000594862 KDM5CP41229 1560 aa28.24■■■□□ 2.11
SHKBP1-204ENST00000594862 ITSN2Q9NZM3 1697 aa28.21■■■□□ 2.11
SHKBP1-204ENST00000594862 GPATCH8Q9UKJ3 1502 aaKnown RBP28.21■■■□□ 2.11
SHKBP1-204ENST00000594862 BCORL1Q5H9F3 1711 aa28.21■■■□□ 2.11
SHKBP1-204ENST00000594862 ADAMTSL3P82987 1691 aa28.2■■■□□ 2.11
SHKBP1-204ENST00000594862 CCNB3Q8WWL7 1395 aa28.2■■■□□ 2.1
SHKBP1-204ENST00000594862 YEATS2Q9ULM3 1422 aa28.19■■■□□ 2.1
SHKBP1-204ENST00000594862 TIAM1Q13009 1591 aa28.19■■■□□ 2.1
SHKBP1-204ENST00000594862 ARID4BQ4LE39 1312 aaPredicted RBP28.18■■■□□ 2.1
SHKBP1-204ENST00000594862 PLEKHH2Q8IVE3 1493 aa28.17■■■□□ 2.1
SHKBP1-204ENST00000594862 ATP10AO60312 1499 aa28.15■■■□□ 2.1
SHKBP1-204ENST00000594862 C9orf84Q5VXU9 1444 aa28.15■■■□□ 2.1
SHKBP1-204ENST00000594862 SUPT6HQ7KZ85 1726 aaKnown RBP28.15■■■□□ 2.1
SHKBP1-204ENST00000594862 SAMD9LQ8IVG5 1584 aa28.14■■■□□ 2.1
SHKBP1-204ENST00000594862 MLH3Q9UHC1 1453 aa28.14■■■□□ 2.09
SHKBP1-204ENST00000594862 MAP3K1Q13233 1512 aa28.13■■■□□ 2.09
SHKBP1-204ENST00000594862 CFDP1Q9UEE9 299 aaPredicted RBP28.11■■■□□ 2.09
SHKBP1-204ENST00000594862 ARHGEF12Q9NZN5 1544 aa28.11■■■□□ 2.09
SHKBP1-204ENST00000594862 KIAA1107Q9UPP5 1409 aa28.1■■■□□ 2.09
SHKBP1-204ENST00000594862 AFAP1Q8N556 730 aa28.1■■■□□ 2.09
SHKBP1-204ENST00000594862 REREQ9P2R6 1566 aa28.09■■■□□ 2.09
SHKBP1-204ENST00000594862 TRAPPC8Q9Y2L5 1435 aa28.09■■■□□ 2.09
SHKBP1-204ENST00000594862 SYCP2Q9BX26 1530 aa28.08■■■□□ 2.09
SHKBP1-204ENST00000594862 MADDQ8WXG6 1647 aa28.08■■■□□ 2.09
SHKBP1-204ENST00000594862 ZNF777Q9ULD5 760 aaPredicted RBP28.07■■■□□ 2.08
SHKBP1-204ENST00000594862 DIP2CQ9Y2E4 1556 aa28.07■■■□□ 2.08
SHKBP1-204ENST00000594862 MYT1LQ9UL68 1186 aa28.06■■■□□ 2.08
SHKBP1-204ENST00000594862 NCOA2Q15596 1464 aa28.06■■■□□ 2.08
SHKBP1-204ENST00000594862 PTPRMP28827 1452 aa28.05■■■□□ 2.08
SHKBP1-204ENST00000594862 ABCA6Q8N139 1617 aa28.04■■■□□ 2.08
SHKBP1-204ENST00000594862 LRRC9Q6ZRR7 1453 aa28.04■■■□□ 2.08
SHKBP1-204ENST00000594862 SIGLEC1Q9BZZ2 1709 aa28.04■■■□□ 2.08
SHKBP1-204ENST00000594862 KIDINS220Q9ULH0 1771 aa28■■■□□ 2.07
SHKBP1-204ENST00000594862 RIMS1Q86UR5 1692 aaKnown RBP28■■■□□ 2.07
SHKBP1-204ENST00000594862 FER1L4A9Z1Z3 1794 aa27.98■■■□□ 2.07
SHKBP1-204ENST00000594862 AGLP35573 1532 aa27.97■■■□□ 2.07
SHKBP1-204ENST00000594862 SPAG9O60271 1321 aaKnown RBP27.95■■■□□ 2.07
SHKBP1-204ENST00000594862 INO80Q9ULG1 1556 aaPredicted RBP27.95■■■□□ 2.07
SHKBP1-204ENST00000594862 ATP7AQ04656 1500 aa27.95■■■□□ 2.06
SHKBP1-204ENST00000594862 HNRNPMP52272 730 aaKnown RBP eCLIP27.94■■■□□ 2.06
SHKBP1-204ENST00000594862 APLP2Q06481 763 aa27.93■■■□□ 2.06
SHKBP1-204ENST00000594862 CAMSAP2Q08AD1 1489 aa27.89■■■□□ 2.06
SHKBP1-204ENST00000594862 MBD5Q9P267 1494 aa27.89■■■□□ 2.06
SHKBP1-204ENST00000594862 MLECQ14165 292 aa27.89■■■□□ 2.06
SHKBP1-204ENST00000594862 RSPH4AQ5TD94 716 aa27.87■■■□□ 2.05
SHKBP1-204ENST00000594862 CCDC141Q6ZP82 1450 aa27.86■■■□□ 2.05
SHKBP1-204ENST00000594862 RTEL1-TNFRSF6BF6WH68 1400 aa27.85■■■□□ 2.05
SHKBP1-204ENST00000594862 ADGBQ8N7X0 1667 aa27.85■■■□□ 2.05
SHKBP1-204ENST00000594862 ZNF644Q9H582 1327 aaPredicted RBP27.85■■■□□ 2.05
SHKBP1-204ENST00000594862 ARHGEF5Q12774 1597 aa27.84■■■□□ 2.05
SHKBP1-204ENST00000594862 MYOM3Q5VTT5 1437 aa27.83■■■□□ 2.05
SHKBP1-204ENST00000594862 MIA2Q96PC5 1412 aa27.83■■■□□ 2.05
SHKBP1-204ENST00000594862 PLXNC1O60486 1568 aa27.82■■■□□ 2.04
SHKBP1-204ENST00000594862 KANK4Q5T7N3 995 aaPredicted RBP27.82■■■□□ 2.04
SHKBP1-204ENST00000594862 A2MP01023 1474 aa27.81■■■□□ 2.04
SHKBP1-204ENST00000594862 CNTLNQ9NXG0 1405 aa27.78■■■□□ 2.04
SHKBP1-204ENST00000594862 ESF1Q9H501 851 aaKnown RBP27.77■■■□□ 2.04
SHKBP1-204ENST00000594862 LMTK3Q96Q04 1460 aa27.76■■■□□ 2.03
SHKBP1-204ENST00000594862 FBXO41Q8TF61 875 aa27.74■■■□□ 2.03
SHKBP1-204ENST00000594862 MAST1Q9Y2H9 1570 aa27.7■■■□□ 2.03
SHKBP1-204ENST00000594862 TSPY4P0CV99 314 aa27.7■■■□□ 2.02
SHKBP1-204ENST00000594862 TSPY10P0CW01 314 aa27.7■■■□□ 2.02
SHKBP1-204ENST00000594862 MROH2AA6NES4 1674 aa27.7■■■□□ 2.02
SHKBP1-204ENST00000594862 PREX1Q8TCU6 1659 aa27.68■■■□□ 2.02
SHKBP1-204ENST00000594862 DHX29Q7Z478 1369 aaKnown RBP27.67■■■□□ 2.02
SHKBP1-204ENST00000594862 C3P01024 1663 aa27.67■■■□□ 2.02
SHKBP1-204ENST00000594862 PLPPR3Q6T4P5 718 aa27.66■■■□□ 2.02
SHKBP1-204ENST00000594862 PPP6R1Q9UPN7 881 aa27.65■■■□□ 2.02
SHKBP1-204ENST00000594862 PTPN23Q9H3S7 1636 aa27.64■■■□□ 2.02
SHKBP1-204ENST00000594862 FAM135AQ9P2D6 1515 aa27.63■■■□□ 2.01
SHKBP1-204ENST00000594862 FGD6Q6ZV73 1430 aa27.61■■■□□ 2.01
SHKBP1-204ENST00000594862 SHANK2Q9UPX8 1470 aa27.6■■■□□ 2.01
SHKBP1-204ENST00000594862 HSPA2P54652 639 aa27.6■■■□□ 2.01
SHKBP1-204ENST00000594862 SETD1BQ9UPS6 1966 aaKnown RBP27.6■■■□□ 2.01
SHKBP1-204ENST00000594862 TCOF1Q13428 1488 aaKnown RBP27.59■■■□□ 2.01
SHKBP1-204ENST00000594862 CROCC2H7BZ55 1655 aa27.59■■■□□ 2.01
SHKBP1-204ENST00000594862 CLTCQ00610 1675 aaKnown RBP27.59■■■□□ 2.01
SHKBP1-204ENST00000594862 CEBPAP49715 358 aaPredicted RBP27.58■■■□□ 2.01
SHKBP1-204ENST00000594862 NPATQ14207 1427 aa27.58■■■□□ 2
SHKBP1-204ENST00000594862 UHRF1BP1Q6BDS2 1440 aa27.58■■■□□ 2
SHKBP1-204ENST00000594862 GGT6Q6P531 493 aa27.55■■■□□ 2
SHKBP1-204ENST00000594862 DNMT1P26358 1616 aaKnown RBP27.55■■■□□ 2
SHKBP1-204ENST00000594862 EIF2AK4Q9P2K8 1649 aaKnown RBP27.55■■■□□ 2
SHKBP1-204ENST00000594862 ZMYM3Q14202 1370 aa27.53■■■□□ 2
SHKBP1-204ENST00000594862 KIF3BO15066 747 aa27.51■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms