RNA–Protein interactions for RNA: ENST00000594399.1

USE1-204, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 2

Gene USE1, Length 613 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-204ENST00000594399 CD109Q6YHK3 1445 aa16.7■□□□□ 0.26
USE1-204ENST00000594399 FGD6Q6ZV73 1430 aa16.7■□□□□ 0.26
USE1-204ENST00000594399 MIA2Q96PC5 1412 aa16.69■□□□□ 0.26
USE1-204ENST00000594399 CFAP74Q9C0B2 1584 aa16.68■□□□□ 0.26
USE1-204ENST00000594399 KDM6BO15054 1643 aa16.67■□□□□ 0.26
USE1-204ENST00000594399 AEBP2Q6ZN18 517 aaPredicted RBP16.67■□□□□ 0.26
USE1-204ENST00000594399 PTPN23Q9H3S7 1636 aa16.67■□□□□ 0.26
USE1-204ENST00000594399 TEX14Q8IWB6 1497 aa16.66■□□□□ 0.26
USE1-204ENST00000594399 PPRC1Q5VV67 1664 aaKnown RBP16.65■□□□□ 0.26
USE1-204ENST00000594399 RRBP1Q9P2E9 1410 aaKnown RBP16.65■□□□□ 0.26
USE1-204ENST00000594399 CFDP1Q9UEE9 299 aaPredicted RBP16.65■□□□□ 0.26
USE1-204ENST00000594399 SAMD9LQ8IVG5 1584 aa16.64■□□□□ 0.25
USE1-204ENST00000594399 FANCAO15360 1455 aa16.64■□□□□ 0.25
USE1-204ENST00000594399 CAMSAP2Q08AD1 1489 aa16.64■□□□□ 0.25
USE1-204ENST00000594399 TCOF1Q13428 1488 aaKnown RBP16.64■□□□□ 0.25
USE1-204ENST00000594399 NEO1Q92859 1461 aa16.61■□□□□ 0.25
USE1-204ENST00000594399 ABCC1P33527 1531 aa16.61■□□□□ 0.25
USE1-204ENST00000594399 PLEKHH2Q8IVE3 1493 aa16.61■□□□□ 0.25
USE1-204ENST00000594399 EFCAB2Q5VUJ9 269 aa16.6■□□□□ 0.25
USE1-204ENST00000594399 ZNF777Q9ULD5 760 aaPredicted RBP16.58■□□□□ 0.24
USE1-204ENST00000594399 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.58■□□□□ 0.24
USE1-204ENST00000594399 SYCP2Q9BX26 1530 aa16.58■□□□□ 0.24
USE1-204ENST00000594399 ADGRL1O94910 1474 aa16.57■□□□□ 0.24
USE1-204ENST00000594399 AKNAQ7Z591 1439 aa16.57■□□□□ 0.24
USE1-204ENST00000594399 ZNF644Q9H582 1327 aaPredicted RBP16.56■□□□□ 0.24
USE1-204ENST00000594399 DNMT1P26358 1616 aaKnown RBP16.56■□□□□ 0.24
USE1-204ENST00000594399 ARHGEF5Q12774 1597 aa16.55■□□□□ 0.24
USE1-204ENST00000594399 KIAA1107Q9UPP5 1409 aa16.55■□□□□ 0.24
USE1-204ENST00000594399 FAM50AQ14320 339 aaKnown RBP16.55■□□□□ 0.24
USE1-204ENST00000594399 CROCC2H7BZ55 1655 aa16.53■□□□□ 0.24
USE1-204ENST00000594399 ARHGEF12Q9NZN5 1544 aa16.53■□□□□ 0.24
USE1-204ENST00000594399 CCDC141Q6ZP82 1450 aa16.52■□□□□ 0.23
USE1-204ENST00000594399 MBD5Q9P267 1494 aa16.52■□□□□ 0.23
USE1-204ENST00000594399 SCAPERQ9BY12 1400 aa16.52■□□□□ 0.23
USE1-204ENST00000594399 COL17A1Q9UMD9 1497 aaPredicted RBP16.51■□□□□ 0.23
USE1-204ENST00000594399 TRIM26Q12899 539 aaPredicted RBP16.5■□□□□ 0.23
USE1-204ENST00000594399 DAPK1P53355 1430 aa16.5■□□□□ 0.23
USE1-204ENST00000594399 POGZQ7Z3K3 1410 aa16.5■□□□□ 0.23
USE1-204ENST00000594399 DENND4BO75064 1496 aaPredicted RBP16.49■□□□□ 0.23
USE1-204ENST00000594399 ZNF518AQ6AHZ1 1483 aa16.49■□□□□ 0.23
USE1-204ENST00000594399 SHANK2Q9UPX8 1470 aa16.48■□□□□ 0.23
USE1-204ENST00000594399 RICTORQ6R327 1708 aa16.48■□□□□ 0.23
USE1-204ENST00000594399 ABCC5O15440 1437 aa16.48■□□□□ 0.23
USE1-204ENST00000594399 HNRNPMP52272 730 aaKnown RBP eCLIP16.48■□□□□ 0.23
USE1-204ENST00000594399 KDM5CP41229 1560 aa16.47■□□□□ 0.23
USE1-204ENST00000594399 FRMPD1Q5SYB0 1578 aa16.47■□□□□ 0.23
USE1-204ENST00000594399 TRAPPC8Q9Y2L5 1435 aa16.47■□□□□ 0.23
USE1-204ENST00000594399 MAST1Q9Y2H9 1570 aa16.47■□□□□ 0.23
USE1-204ENST00000594399 ADGBQ8N7X0 1667 aa16.46■□□□□ 0.23
USE1-204ENST00000594399 RSPH4AQ5TD94 716 aa16.45■□□□□ 0.22
USE1-204ENST00000594399 INO80Q9ULG1 1556 aaPredicted RBP16.44■□□□□ 0.22
USE1-204ENST00000594399 ZMYM4Q5VZL5 1548 aa16.44■□□□□ 0.22
USE1-204ENST00000594399 ZFYVE16Q7Z3T8 1539 aa16.44■□□□□ 0.22
USE1-204ENST00000594399 C9orf84Q5VXU9 1444 aa16.44■□□□□ 0.22
USE1-204ENST00000594399 HECW2Q9P2P5 1572 aa16.43■□□□□ 0.22
USE1-204ENST00000594399 ITGAEP38570 1179 aa16.43■□□□□ 0.22
USE1-204ENST00000594399 PTPRKQ15262 1439 aa16.43■□□□□ 0.22
USE1-204ENST00000594399 ADGRL2O95490 1459 aa16.42■□□□□ 0.22
USE1-204ENST00000594399 ATP7AQ04656 1500 aa16.41■□□□□ 0.22
USE1-204ENST00000594399 PLXNC1O60486 1568 aa16.41■□□□□ 0.22
USE1-204ENST00000594399 TSPY4P0CV99 314 aa16.4■□□□□ 0.22
USE1-204ENST00000594399 TSPY10P0CW01 314 aa16.4■□□□□ 0.22
USE1-204ENST00000594399 AFAP1Q8N556 730 aa16.4■□□□□ 0.22
USE1-204ENST00000594399 RTEL1-TNFRSF6BF6WH68 1400 aa16.39■□□□□ 0.21
USE1-204ENST00000594399 KDM4FA0A1W2PPD8 638 aa16.39■□□□□ 0.21
USE1-204ENST00000594399 RAPGEF3O95398 923 aa16.39■□□□□ 0.21
USE1-204ENST00000594399 MLH3Q9UHC1 1453 aa16.39■□□□□ 0.21
USE1-204ENST00000594399 SPAG9O60271 1321 aaKnown RBP16.39■□□□□ 0.21
USE1-204ENST00000594399 KIDINS220Q9ULH0 1771 aa16.38■□□□□ 0.21
USE1-204ENST00000594399 ROCK1Q13464 1354 aa16.38■□□□□ 0.21
USE1-204ENST00000594399 ANKRD30AQ9BXX3 1397 aa16.37■□□□□ 0.21
USE1-204ENST00000594399 GCC2Q8IWJ2 1684 aa16.37■□□□□ 0.21
USE1-204ENST00000594399 MAGI2Q86UL8 1455 aa16.36■□□□□ 0.21
USE1-204ENST00000594399 CHIC2Q9UKJ5 165 aa16.36■□□□□ 0.21
USE1-204ENST00000594399 ABCA6Q8N139 1617 aa16.36■□□□□ 0.21
USE1-204ENST00000594399 ARHGEF40Q8TER5 1519 aa16.35■□□□□ 0.21
USE1-204ENST00000594399 HFM1A2PYH4 1435 aa16.34■□□□□ 0.21
USE1-204ENST00000594399 NCOA1Q15788 1441 aa16.34■□□□□ 0.21
USE1-204ENST00000594399 DIP2CQ9Y2E4 1556 aa16.34■□□□□ 0.21
USE1-204ENST00000594399 PCGF6Q9BYE7 350 aa16.33■□□□□ 0.2
USE1-204ENST00000594399 MYT1LQ9UL68 1186 aa16.33■□□□□ 0.2
USE1-204ENST00000594399 KIF15Q9NS87 1388 aa16.33■□□□□ 0.2
USE1-204ENST00000594399 DUOX2Q9NRD8 1548 aa16.31■□□□□ 0.2
USE1-204ENST00000594399 NAIPQ13075 1403 aa16.3■□□□□ 0.2
USE1-204ENST00000594399 YEATS2Q9ULM3 1422 aa16.3■□□□□ 0.2
USE1-204ENST00000594399 RRP7BPQ9NSQ0 103 aa16.29■□□□□ 0.2
USE1-204ENST00000594399 A2MP01023 1474 aa16.28■□□□□ 0.2
USE1-204ENST00000594399 ERBINQ96RT1 1412 aa16.28■□□□□ 0.2
USE1-204ENST00000594399 REREQ9P2R6 1566 aa16.27■□□□□ 0.2
USE1-204ENST00000594399 SETD5Q9C0A6 1442 aa16.27■□□□□ 0.19
USE1-204ENST00000594399 EIF2AK4Q9P2K8 1649 aaKnown RBP16.27■□□□□ 0.19
USE1-204ENST00000594399 ATP10AO60312 1499 aa16.26■□□□□ 0.19
USE1-204ENST00000594399 ANKRD50Q9ULJ7 1429 aa16.26■□□□□ 0.19
USE1-204ENST00000594399 DHX29Q7Z478 1369 aaKnown RBP16.24■□□□□ 0.19
USE1-204ENST00000594399 BCORL1Q5H9F3 1711 aa16.22■□□□□ 0.19
USE1-204ENST00000594399 RAB3GAP2Q9H2M9 1393 aa16.22■□□□□ 0.19
USE1-204ENST00000594399 ARID4BQ4LE39 1312 aaPredicted RBP16.2■□□□□ 0.18
USE1-204ENST00000594399 AGLP35573 1532 aa16.2■□□□□ 0.18
USE1-204ENST00000594399 UNC13BO14795 1591 aa16.2■□□□□ 0.18
USE1-204ENST00000594399 DEPDC5O75140 1603 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms