RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 MSH5O43196 834 aa20.48■□□□□ 0.87
SMARCA4-219ENST00000592604 WDR62O43379 1518 aa20.48■□□□□ 0.87
SMARCA4-219ENST00000592604 ANKRD30BQ9BXX2 1392 aa20.48■□□□□ 0.87
SMARCA4-219ENST00000592604 RPRD2Q5VT52 1461 aaKnown RBP20.48■□□□□ 0.87
SMARCA4-219ENST00000592604 C11orf95C9JLR9 678 aaPredicted RBP20.48■□□□□ 0.87
SMARCA4-219ENST00000592604 CCDC184Q52MB2 194 aa20.48■□□□□ 0.87
SMARCA4-219ENST00000592604 CDK13Q14004 1512 aaKnown RBP20.46■□□□□ 0.87
SMARCA4-219ENST00000592604 PBRM1Q86U86 1689 aa20.46■□□□□ 0.87
SMARCA4-219ENST00000592604 IRX6P78412 446 aaPredicted RBP20.46■□□□□ 0.87
SMARCA4-219ENST00000592604 PPP4R2Q9NY27 417 aa20.46■□□□□ 0.87
SMARCA4-219ENST00000592604 POLR1AO95602 1720 aaPredicted RBP20.46■□□□□ 0.87
SMARCA4-219ENST00000592604 TEX14Q8IWB6 1497 aa20.44■□□□□ 0.86
SMARCA4-219ENST00000592604 SPATA31E1Q6ZUB1 1445 aa20.44■□□□□ 0.86
SMARCA4-219ENST00000592604 ZBED9Q6R2W3 1325 aa20.43■□□□□ 0.86
SMARCA4-219ENST00000592604 DAPK1P53355 1430 aa20.43■□□□□ 0.86
SMARCA4-219ENST00000592604 NBPF8Q3BBV2 869 aa20.42■□□□□ 0.86
SMARCA4-219ENST00000592604 DNMT1P26358 1616 aaKnown RBP20.41■□□□□ 0.86
SMARCA4-219ENST00000592604 ADAMTS12P58397 1594 aa20.41■□□□□ 0.86
SMARCA4-219ENST00000592604 FOXD1Q16676 465 aa20.41■□□□□ 0.86
SMARCA4-219ENST00000592604 MRS2Q9HD23 443 aa20.39■□□□□ 0.85
SMARCA4-219ENST00000592604 ABCC5O15440 1437 aa20.39■□□□□ 0.85
SMARCA4-219ENST00000592604 KIF7Q2M1P5 1343 aa20.37■□□□□ 0.85
SMARCA4-219ENST00000592604 FAM9BQ8IZU0 186 aa20.37■□□□□ 0.85
SMARCA4-219ENST00000592604 SLC4A1APQ9BWU0 796 aaKnown RBP20.32■□□□□ 0.84
SMARCA4-219ENST00000592604 PZPP20742 1482 aa20.28■□□□□ 0.84
SMARCA4-219ENST00000592604 NUP153P49790 1475 aaKnown RBP20.28■□□□□ 0.84
SMARCA4-219ENST00000592604 KIAA0556O60303 1618 aa20.28■□□□□ 0.84
SMARCA4-219ENST00000592604 ZNF644Q9H582 1327 aaPredicted RBP20.28■□□□□ 0.84
SMARCA4-219ENST00000592604 MBD5Q9P267 1494 aa20.28■□□□□ 0.84
SMARCA4-219ENST00000592604 ARID3CA6NKF2 412 aa20.27■□□□□ 0.84
SMARCA4-219ENST00000592604 DISP1Q96F81 1524 aa20.27■□□□□ 0.83
SMARCA4-219ENST00000592604 DHX29Q7Z478 1369 aaKnown RBP20.26■□□□□ 0.83
SMARCA4-219ENST00000592604 KIAA0586Q9BVV6 1533 aa20.26■□□□□ 0.83
SMARCA4-219ENST00000592604 SMG6Q86US8 1419 aaKnown RBP20.26■□□□□ 0.83
SMARCA4-219ENST00000592604 B4GALNT3Q6L9W6 998 aa20.25■□□□□ 0.83
SMARCA4-219ENST00000592604 RAPGEF6Q8TEU7 1601 aa20.25■□□□□ 0.83
SMARCA4-219ENST00000592604 ARID4BQ4LE39 1312 aaPredicted RBP20.23■□□□□ 0.83
SMARCA4-219ENST00000592604 DNAJC5BQ9UF47 199 aa20.23■□□□□ 0.83
SMARCA4-219ENST00000592604 ADGBQ8N7X0 1667 aa20.22■□□□□ 0.83
SMARCA4-219ENST00000592604 BCORL1Q5H9F3 1711 aa20.21■□□□□ 0.83
SMARCA4-219ENST00000592604 KIAA1107Q9UPP5 1409 aa20.21■□□□□ 0.83
SMARCA4-219ENST00000592604 RNF123Q5XPI4 1314 aa20.2■□□□□ 0.83
SMARCA4-219ENST00000592604 ADGRL2O95490 1459 aa20.2■□□□□ 0.82
SMARCA4-219ENST00000592604 MRC2Q9UBG0 1479 aa20.2■□□□□ 0.82
SMARCA4-219ENST00000592604 CAMSAP2Q08AD1 1489 aa20.19■□□□□ 0.82
SMARCA4-219ENST00000592604 TROQ12816 1431 aaPredicted RBP20.19■□□□□ 0.82
SMARCA4-219ENST00000592604 ITSN2Q9NZM3 1697 aa20.19■□□□□ 0.82
SMARCA4-219ENST00000592604 KIF14Q15058 1648 aa20.19■□□□□ 0.82
SMARCA4-219ENST00000592604 USP47Q96K76 1375 aa20.19■□□□□ 0.82
SMARCA4-219ENST00000592604 NUDCQ9Y266 331 aa20.17■□□□□ 0.82
SMARCA4-219ENST00000592604 KDM5CP41229 1560 aa20.17■□□□□ 0.82
SMARCA4-219ENST00000592604 MYT1LQ9UL68 1186 aa20.16■□□□□ 0.82
SMARCA4-219ENST00000592604 CROCC2H7BZ55 1655 aa20.15■□□□□ 0.82
SMARCA4-219ENST00000592604 IFT140Q96RY7 1462 aa20.15■□□□□ 0.82
SMARCA4-219ENST00000592604 GPATCH8Q9UKJ3 1502 aaKnown RBP20.15■□□□□ 0.82
SMARCA4-219ENST00000592604 CFDP1Q9UEE9 299 aaPredicted RBP20.14■□□□□ 0.82
SMARCA4-219ENST00000592604 ADCY10Q96PN6 1610 aa20.14■□□□□ 0.81
SMARCA4-219ENST00000592604 UHRF1BP1Q6BDS2 1440 aa20.14■□□□□ 0.81
SMARCA4-219ENST00000592604 PRG4Q92954 1404 aaPredicted RBP20.14■□□□□ 0.81
SMARCA4-219ENST00000592604 ROCK2O75116 1388 aaKnown RBP20.13■□□□□ 0.81
SMARCA4-219ENST00000592604 ZNF608Q9ULD9 1512 aaPredicted RBP20.12■□□□□ 0.81
SMARCA4-219ENST00000592604 EIF5BO60841 1220 aaKnown RBP20.11■□□□□ 0.81
SMARCA4-219ENST00000592604 PKD2Q13563 968 aa20.11■□□□□ 0.81
SMARCA4-219ENST00000592604 GRIN2AQ12879 1464 aa20.11■□□□□ 0.81
SMARCA4-219ENST00000592604 ANKRD30AQ9BXX3 1397 aa20.1■□□□□ 0.81
SMARCA4-219ENST00000592604 PNISRQ8TF01 805 aaKnown RBP20.1■□□□□ 0.81
SMARCA4-219ENST00000592604 RALGAPBQ86X10 1494 aa20.1■□□□□ 0.81
SMARCA4-219ENST00000592604 ANO8Q9HCE9 1232 aaPredicted RBP20.07■□□□□ 0.8
SMARCA4-219ENST00000592604 ANKRD50Q9ULJ7 1429 aa20.07■□□□□ 0.8
SMARCA4-219ENST00000592604 ARHGEF12Q9NZN5 1544 aa20.07■□□□□ 0.8
SMARCA4-219ENST00000592604 DAXXQ9UER7 740 aaPredicted RBP20.05■□□□□ 0.8
SMARCA4-219ENST00000592604 ZNF326Q5BKZ1 582 aaKnown RBP20.04■□□□□ 0.8
SMARCA4-219ENST00000592604 CCDC136Q96JN2 1154 aa20.04■□□□□ 0.8
SMARCA4-219ENST00000592604 LRPPRCP42704 1394 aaKnown RBP20.04■□□□□ 0.8
SMARCA4-219ENST00000592604 KIF15Q9NS87 1388 aa20.04■□□□□ 0.8
SMARCA4-219ENST00000592604 KTN1Q86UP2 1357 aaKnown RBP20.03■□□□□ 0.8
SMARCA4-219ENST00000592604 PLB1Q6P1J6 1458 aa20.03■□□□□ 0.8
SMARCA4-219ENST00000592604 POLR3GLQ9BT43 218 aa20.03■□□□□ 0.8
SMARCA4-219ENST00000592604 NOP58Q9Y2X3 529 aaKnown RBP20.03■□□□□ 0.8
SMARCA4-219ENST00000592604 TMC1Q8TDI8 760 aa20.03■□□□□ 0.8
SMARCA4-219ENST00000592604 SHANK2Q9UPX8 1470 aa20.02■□□□□ 0.8
SMARCA4-219ENST00000592604 KDM5DQ9BY66 1539 aa20.02■□□□□ 0.8
SMARCA4-219ENST00000592604 ZNF777Q9ULD5 760 aaPredicted RBP20.01■□□□□ 0.79
SMARCA4-219ENST00000592604 BRD4O60885 1362 aaPredicted RBP20■□□□□ 0.79
SMARCA4-219ENST00000592604 CARD11Q9BXL7 1154 aa20■□□□□ 0.79
SMARCA4-219ENST00000592604 EIF4G3O43432 1585 aaKnown RBP19.99■□□□□ 0.79
SMARCA4-219ENST00000592604 CDC42BPAQ5VT25 1732 aa19.99■□□□□ 0.79
SMARCA4-219ENST00000592604 NUP155O75694 1391 aa19.99■□□□□ 0.79
SMARCA4-219ENST00000592604 CNGB1Q14028 1251 aaPredicted RBP19.98■□□□□ 0.79
SMARCA4-219ENST00000592604 RALBP1Q15311 655 aa19.98■□□□□ 0.79
SMARCA4-219ENST00000592604 E9PCH4 1651 aa19.97■□□□□ 0.79
SMARCA4-219ENST00000592604 MYBBP1AQ9BQG0 1328 aaKnown RBP19.97■□□□□ 0.79
SMARCA4-219ENST00000592604 CEP170Q5SW79 1584 aa19.97■□□□□ 0.79
SMARCA4-219ENST00000592604 MAGI1Q96QZ7 1491 aaPredicted RBP19.96■□□□□ 0.79
SMARCA4-219ENST00000592604 PTPRGP23470 1445 aa19.96■□□□□ 0.79
SMARCA4-219ENST00000592604 C9orf84Q5VXU9 1444 aa19.96■□□□□ 0.79
SMARCA4-219ENST00000592604 ABCC10Q5T3U5 1492 aa19.95■□□□□ 0.79
SMARCA4-219ENST00000592604 ST20-MTHFSA0A0A6YYL1 179 aa19.94■□□□□ 0.78
SMARCA4-219ENST00000592604 PAK3O75914 559 aaPredicted RBP19.94■□□□□ 0.78
SMARCA4-219ENST00000592604 CARMIL2Q6F5E8 1435 aa19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms