RNA–Protein interactions for RNA: ENST00000589823.6

VMP1-210, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 580 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-210ENST00000589823 CFDP1Q9UEE9 299 aaPredicted RBP21.02■□□□□ 0.96
VMP1-210ENST00000589823 FANCAO15360 1455 aa21.01■□□□□ 0.95
VMP1-210ENST00000589823 PHLDB1Q86UU1 1377 aa21■□□□□ 0.95
VMP1-210ENST00000589823 PPRC1Q5VV67 1664 aaKnown RBP21■□□□□ 0.95
VMP1-210ENST00000589823 MYOM3Q5VTT5 1437 aa21■□□□□ 0.95
VMP1-210ENST00000589823 CFAP74Q9C0B2 1584 aa20.99■□□□□ 0.95
VMP1-210ENST00000589823 CDC42BPBQ9Y5S2 1711 aa20.98■□□□□ 0.95
VMP1-210ENST00000589823 NEO1Q92859 1461 aa20.98■□□□□ 0.95
VMP1-210ENST00000589823 ZNF777Q9ULD5 760 aaPredicted RBP20.97■□□□□ 0.95
VMP1-210ENST00000589823 MIA2Q96PC5 1412 aa20.95■□□□□ 0.94
VMP1-210ENST00000589823 AKNAQ7Z591 1439 aa20.94■□□□□ 0.94
VMP1-210ENST00000589823 FGD6Q6ZV73 1430 aa20.92■□□□□ 0.94
VMP1-210ENST00000589823 ADGRL1O94910 1474 aa20.9■□□□□ 0.94
VMP1-210ENST00000589823 PLEKHH2Q8IVE3 1493 aa20.9■□□□□ 0.94
VMP1-210ENST00000589823 SAMD9LQ8IVG5 1584 aa20.89■□□□□ 0.93
VMP1-210ENST00000589823 CAMSAP2Q08AD1 1489 aa20.88■□□□□ 0.93
VMP1-210ENST00000589823 ZNF644Q9H582 1327 aaPredicted RBP20.88■□□□□ 0.93
VMP1-210ENST00000589823 SCAPERQ9BY12 1400 aa20.87■□□□□ 0.93
VMP1-210ENST00000589823 ABCC1P33527 1531 aa20.87■□□□□ 0.93
VMP1-210ENST00000589823 PTPN23Q9H3S7 1636 aa20.86■□□□□ 0.93
VMP1-210ENST00000589823 KIAA1107Q9UPP5 1409 aa20.85■□□□□ 0.93
VMP1-210ENST00000589823 DENND4BO75064 1496 aaPredicted RBP20.84■□□□□ 0.93
VMP1-210ENST00000589823 TCOF1Q13428 1488 aaKnown RBP20.84■□□□□ 0.93
VMP1-210ENST00000589823 FAM50AQ14320 339 aaKnown RBP20.84■□□□□ 0.93
VMP1-210ENST00000589823 SYCP2Q9BX26 1530 aa20.83■□□□□ 0.93
VMP1-210ENST00000589823 KDM6BO15054 1643 aa20.83■□□□□ 0.93
VMP1-210ENST00000589823 HNRNPMP52272 730 aaKnown RBP eCLIP20.83■□□□□ 0.932e-7■■■■□ 25.4
VMP1-210ENST00000589823 RRBP1Q9P2E9 1410 aaKnown RBP20.8■□□□□ 0.92
VMP1-210ENST00000589823 ARHGEF12Q9NZN5 1544 aa20.8■□□□□ 0.92
VMP1-210ENST00000589823 RSPH4AQ5TD94 716 aa20.8■□□□□ 0.92
VMP1-210ENST00000589823 POGZQ7Z3K3 1410 aa20.79■□□□□ 0.92
VMP1-210ENST00000589823 RAPGEF3O95398 923 aa20.79■□□□□ 0.92
VMP1-210ENST00000589823 ZNF518AQ6AHZ1 1483 aa20.79■□□□□ 0.92
VMP1-210ENST00000589823 COL17A1Q9UMD9 1497 aaPredicted RBP20.79■□□□□ 0.92
VMP1-210ENST00000589823 TRAPPC8Q9Y2L5 1435 aa20.78■□□□□ 0.92
VMP1-210ENST00000589823 MBD5Q9P267 1494 aa20.78■□□□□ 0.92
VMP1-210ENST00000589823 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.77■□□□□ 0.92
VMP1-210ENST00000589823 ARHGEF5Q12774 1597 aa20.76■□□□□ 0.91
VMP1-210ENST00000589823 CCDC141Q6ZP82 1450 aa20.76■□□□□ 0.91
VMP1-210ENST00000589823 AFAP1Q8N556 730 aa20.76■□□□□ 0.91
VMP1-210ENST00000589823 RICTORQ6R327 1708 aa20.75■□□□□ 0.91
VMP1-210ENST00000589823 MYT1LQ9UL68 1186 aa20.74■□□□□ 0.91
VMP1-210ENST00000589823 FRMPD1Q5SYB0 1578 aa20.73■□□□□ 0.91
VMP1-210ENST00000589823 TSPY4P0CV99 314 aa20.73■□□□□ 0.91
VMP1-210ENST00000589823 TSPY10P0CW01 314 aa20.73■□□□□ 0.91
VMP1-210ENST00000589823 SPAG9O60271 1321 aaKnown RBP20.72■□□□□ 0.91
VMP1-210ENST00000589823 DAPK1P53355 1430 aa20.71■□□□□ 0.91
VMP1-210ENST00000589823 KDM5CP41229 1560 aa20.71■□□□□ 0.91
VMP1-210ENST00000589823 DNMT1P26358 1616 aaKnown RBP20.71■□□□□ 0.91
VMP1-210ENST00000589823 ABCC5O15440 1437 aa20.7■□□□□ 0.9
VMP1-210ENST00000589823 ZMYM4Q5VZL5 1548 aa20.69■□□□□ 0.9
VMP1-210ENST00000589823 ITGAEP38570 1179 aa20.68■□□□□ 0.9
VMP1-210ENST00000589823 MAGI2Q86UL8 1455 aa20.68■□□□□ 0.9
VMP1-210ENST00000589823 HECW2Q9P2P5 1572 aa20.68■□□□□ 0.9
VMP1-210ENST00000589823 MLH3Q9UHC1 1453 aa20.67■□□□□ 0.9
VMP1-210ENST00000589823 C9orf84Q5VXU9 1444 aa20.66■□□□□ 0.9
VMP1-210ENST00000589823 SHANK2Q9UPX8 1470 aa20.66■□□□□ 0.9
VMP1-210ENST00000589823 CROCC2H7BZ55 1655 aa20.66■□□□□ 0.9
VMP1-210ENST00000589823 RTEL1-TNFRSF6BF6WH68 1400 aa20.65■□□□□ 0.9
VMP1-210ENST00000589823 ATP7AQ04656 1500 aa20.64■□□□□ 0.9
VMP1-210ENST00000589823 MAST1Q9Y2H9 1570 aa20.63■□□□□ 0.89
VMP1-210ENST00000589823 ZFYVE16Q7Z3T8 1539 aa20.63■□□□□ 0.89
VMP1-210ENST00000589823 CHIC2Q9UKJ5 165 aa20.63■□□□□ 0.89
VMP1-210ENST00000589823 INO80Q9ULG1 1556 aaPredicted RBP20.63■□□□□ 0.89
VMP1-210ENST00000589823 KIDINS220Q9ULH0 1771 aa20.61■□□□□ 0.89
VMP1-210ENST00000589823 YEATS2Q9ULM3 1422 aa20.61■□□□□ 0.89
VMP1-210ENST00000589823 PTPRKQ15262 1439 aa20.6■□□□□ 0.89
VMP1-210ENST00000589823 ANKRD30AQ9BXX3 1397 aa20.59■□□□□ 0.89
VMP1-210ENST00000589823 ARHGEF40Q8TER5 1519 aa20.59■□□□□ 0.89
VMP1-210ENST00000589823 TRIM26Q12899 539 aaPredicted RBP20.57■□□□□ 0.88
VMP1-210ENST00000589823 ABCA6Q8N139 1617 aa20.56■□□□□ 0.88
VMP1-210ENST00000589823 ATP10AO60312 1499 aa20.56■□□□□ 0.88
VMP1-210ENST00000589823 ADGRL2O95490 1459 aa20.56■□□□□ 0.88
VMP1-210ENST00000589823 DIP2CQ9Y2E4 1556 aa20.56■□□□□ 0.88
VMP1-210ENST00000589823 ADGBQ8N7X0 1667 aa20.56■□□□□ 0.88
VMP1-210ENST00000589823 ROCK1Q13464 1354 aa20.56■□□□□ 0.88
VMP1-210ENST00000589823 PLXNC1O60486 1568 aa20.55■□□□□ 0.88
VMP1-210ENST00000589823 RRP7BPQ9NSQ0 103 aa20.55■□□□□ 0.88
VMP1-210ENST00000589823 NCOA1Q15788 1441 aa20.54■□□□□ 0.88
VMP1-210ENST00000589823 KIF15Q9NS87 1388 aa20.54■□□□□ 0.88
VMP1-210ENST00000589823 A2MP01023 1474 aa20.52■□□□□ 0.88
VMP1-210ENST00000589823 DHX29Q7Z478 1369 aaKnown RBP20.5■□□□□ 0.87
VMP1-210ENST00000589823 DUOX2Q9NRD8 1548 aa20.5■□□□□ 0.87
VMP1-210ENST00000589823 REREQ9P2R6 1566 aa20.49■□□□□ 0.87
VMP1-210ENST00000589823 AEBP2Q6ZN18 517 aaPredicted RBP20.48■□□□□ 0.87
VMP1-210ENST00000589823 ARID4BQ4LE39 1312 aaPredicted RBP20.47■□□□□ 0.87
VMP1-210ENST00000589823 ERBINQ96RT1 1412 aa20.45■□□□□ 0.86
VMP1-210ENST00000589823 HFM1A2PYH4 1435 aa20.44■□□□□ 0.86
VMP1-210ENST00000589823 ANKRD50Q9ULJ7 1429 aa20.44■□□□□ 0.86
VMP1-210ENST00000589823 AGLP35573 1532 aa20.43■□□□□ 0.86
VMP1-210ENST00000589823 NAIPQ13075 1403 aa20.43■□□□□ 0.86
VMP1-210ENST00000589823 KIF3BO15066 747 aa20.41■□□□□ 0.86
VMP1-210ENST00000589823 GCC2Q8IWJ2 1684 aa20.41■□□□□ 0.86
VMP1-210ENST00000589823 EIF2AK4Q9P2K8 1649 aaKnown RBP20.4■□□□□ 0.86
VMP1-210ENST00000589823 SIGLEC1Q9BZZ2 1709 aa20.39■□□□□ 0.85
VMP1-210ENST00000589823 MLECQ14165 292 aa20.37■□□□□ 0.85
VMP1-210ENST00000589823 GGT6Q6P531 493 aa20.37■□□□□ 0.85
VMP1-210ENST00000589823 SETD5Q9C0A6 1442 aa20.36■□□□□ 0.85
VMP1-210ENST00000589823 BCORL1Q5H9F3 1711 aa20.36■□□□□ 0.85
VMP1-210ENST00000589823 PCGF6Q9BYE7 350 aa20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms