RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 TROQ12816 1431 aaPredicted RBP9.37□□□□□ -0.91
LIG3-206ENST00000586058 CROCC2H7BZ55 1655 aa9.36□□□□□ -0.91
LIG3-206ENST00000586058 KANK4Q5T7N3 995 aaPredicted RBP9.36□□□□□ -0.91
LIG3-206ENST00000586058 ZNF219Q9P2Y4 722 aaPredicted RBP9.36□□□□□ -0.91
LIG3-206ENST00000586058 MYOM3Q5VTT5 1437 aa9.36□□□□□ -0.91
LIG3-206ENST00000586058 CCNB3Q8WWL7 1395 aa9.36□□□□□ -0.91
LIG3-206ENST00000586058 ARHGEF11O15085 1522 aa9.36□□□□□ -0.91
LIG3-206ENST00000586058 RIMBP3CA6NJZ7 1639 aa9.35□□□□□ -0.91
LIG3-206ENST00000586058 RIMBP3BA6NNM3 1639 aa9.35□□□□□ -0.91
LIG3-206ENST00000586058 RIMBP3Q9UFD9 1639 aa9.35□□□□□ -0.91
LIG3-206ENST00000586058 FGD6Q6ZV73 1430 aa9.34□□□□□ -0.91
LIG3-206ENST00000586058 ABCB7O75027 752 aa9.34□□□□□ -0.91
LIG3-206ENST00000586058 GCC2Q8IWJ2 1684 aa9.34□□□□□ -0.91
LIG3-206ENST00000586058 ARID3CA6NKF2 412 aa9.33□□□□□ -0.92
LIG3-206ENST00000586058 CDC42BPBQ9Y5S2 1711 aa9.33□□□□□ -0.92
LIG3-206ENST00000586058 CFAP74Q9C0B2 1584 aa9.33□□□□□ -0.92
LIG3-206ENST00000586058 KDM5BQ9UGL1 1544 aa9.32□□□□□ -0.92
LIG3-206ENST00000586058 DNMT1P26358 1616 aaKnown RBP9.32□□□□□ -0.92
LIG3-206ENST00000586058 PLEKHD1A6NEE1 506 aa9.32□□□□□ -0.92
LIG3-206ENST00000586058 SAMD1Q6SPF0 538 aaPredicted RBP9.32□□□□□ -0.92
LIG3-206ENST00000586058 PHLDB1Q86UU1 1377 aa9.32□□□□□ -0.92
LIG3-206ENST00000586058 ATP10BO94823 1461 aa9.32□□□□□ -0.92
LIG3-206ENST00000586058 MIA2Q96PC5 1412 aa9.31□□□□□ -0.92
LIG3-206ENST00000586058 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.31□□□□□ -0.92
LIG3-206ENST00000586058 TTC37Q6PGP7 1564 aa9.3□□□□□ -0.92
LIG3-206ENST00000586058 TCOF1Q13428 1488 aaKnown RBP9.29□□□□□ -0.92
LIG3-206ENST00000586058 FAM50AQ14320 339 aaKnown RBP9.29□□□□□ -0.92
LIG3-206ENST00000586058 ARHGAP5Q13017 1502 aa9.28□□□□□ -0.92
LIG3-206ENST00000586058 NPM1P06748 294 aaKnown RBP eCLIP9.28□□□□□ -0.92
LIG3-206ENST00000586058 CAMSAP2Q08AD1 1489 aa9.28□□□□□ -0.92
LIG3-206ENST00000586058 WDR7Q9Y4E6 1490 aa9.28□□□□□ -0.92
LIG3-206ENST00000586058 ABCA9Q8IUA7 1624 aa9.27□□□□□ -0.92
LIG3-206ENST00000586058 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.26□□□□□ -0.93
LIG3-206ENST00000586058 MYCNP04198 464 aaPredicted RBP9.25□□□□□ -0.93
LIG3-206ENST00000586058 ABCC10Q5T3U5 1492 aa9.25□□□□□ -0.93
LIG3-206ENST00000586058 ARAP3Q8WWN8 1544 aa9.25□□□□□ -0.93
LIG3-206ENST00000586058 ARHGEF5Q12774 1597 aa9.24□□□□□ -0.93
LIG3-206ENST00000586058 PLEKHH2Q8IVE3 1493 aa9.24□□□□□ -0.93
LIG3-206ENST00000586058 ITGAEP38570 1179 aa9.24□□□□□ -0.93
LIG3-206ENST00000586058 MAPKBP1O60336 1514 aa9.24□□□□□ -0.93
LIG3-206ENST00000586058 SAMD9LQ8IVG5 1584 aa9.24□□□□□ -0.93
LIG3-206ENST00000586058 GPATCH8Q9UKJ3 1502 aaKnown RBP9.23□□□□□ -0.93
LIG3-206ENST00000586058 POTEHQ6S545 545 aa9.22□□□□□ -0.93
LIG3-206ENST00000586058 CFDP1Q9UEE9 299 aaPredicted RBP9.22□□□□□ -0.93
LIG3-206ENST00000586058 SHANK2Q9UPX8 1470 aa9.21□□□□□ -0.93
LIG3-206ENST00000586058 ZEB1P37275 1124 aaPredicted RBP9.21□□□□□ -0.94
LIG3-206ENST00000586058 DAPK1P53355 1430 aa9.21□□□□□ -0.94
LIG3-206ENST00000586058 ASXL2Q76L83 1435 aa9.21□□□□□ -0.94
LIG3-206ENST00000586058 AKNAQ7Z591 1439 aa9.21□□□□□ -0.94
LIG3-206ENST00000586058 SYCP2Q9BX26 1530 aa9.21□□□□□ -0.94
LIG3-206ENST00000586058 CCER1Q8TC90 406 aaPredicted RBP9.2□□□□□ -0.94
LIG3-206ENST00000586058 ABCC1P33527 1531 aa9.2□□□□□ -0.94
LIG3-206ENST00000586058 SLC4A1APQ9BWU0 796 aaKnown RBP9.19□□□□□ -0.94
LIG3-206ENST00000586058 ZNF777Q9ULD5 760 aaPredicted RBP9.19□□□□□ -0.94
LIG3-206ENST00000586058 ACIN1Q9UKV3 1341 aaKnown RBP9.19□□□□□ -0.94
LIG3-206ENST00000586058 SETD5Q9C0A6 1442 aa9.19□□□□□ -0.94
LIG3-206ENST00000586058 CCDC141Q6ZP82 1450 aa9.19□□□□□ -0.94
LIG3-206ENST00000586058 PLXNC1O60486 1568 aa9.19□□□□□ -0.94
LIG3-206ENST00000586058 MAST1Q9Y2H9 1570 aa9.19□□□□□ -0.94
LIG3-206ENST00000586058 MAP3K4Q9Y6R4 1608 aa9.19□□□□□ -0.94
LIG3-206ENST00000586058 TSPOAP1O95153 1857 aa9.19□□□□□ -0.94
LIG3-206ENST00000586058 HFM1A2PYH4 1435 aa9.18□□□□□ -0.94
LIG3-206ENST00000586058 KCNH8Q96L42 1107 aa9.17□□□□□ -0.94
LIG3-206ENST00000586058 KIF13AQ9H1H9 1805 aa9.17□□□□□ -0.94
LIG3-206ENST00000586058 DIP2BQ9P265 1576 aa9.16□□□□□ -0.94
LIG3-206ENST00000586058 PLCH2O75038 1416 aa9.16□□□□□ -0.94
LIG3-206ENST00000586058 GLI2P10070 1586 aa9.16□□□□□ -0.94
LIG3-206ENST00000586058 FANCAO15360 1455 aa9.15□□□□□ -0.94
LIG3-206ENST00000586058 ADGRL2O95490 1459 aa9.15□□□□□ -0.94
LIG3-206ENST00000586058 ROCK1Q13464 1354 aa9.15□□□□□ -0.94
LIG3-206ENST00000586058 ANKRD30AQ9BXX3 1397 aa9.14□□□□□ -0.95
LIG3-206ENST00000586058 RAB3GAP2Q9H2M9 1393 aa9.14□□□□□ -0.95
LIG3-206ENST00000586058 HRCP23327 699 aa9.14□□□□□ -0.95
LIG3-206ENST00000586058 RSPH4AQ5TD94 716 aa9.14□□□□□ -0.95
LIG3-206ENST00000586058 C9orf84Q5VXU9 1444 aa9.14□□□□□ -0.95
LIG3-206ENST00000586058 INO80Q9ULG1 1556 aaPredicted RBP9.13□□□□□ -0.95
LIG3-206ENST00000586058 EFCAB2Q5VUJ9 269 aa9.13□□□□□ -0.95
LIG3-206ENST00000586058 CYB5RLQ6IPT4 315 aa9.13□□□□□ -0.95
LIG3-206ENST00000586058 FOXD4L1Q9NU39 408 aa9.13□□□□□ -0.95
LIG3-206ENST00000586058 ADGRL1O94910 1474 aa9.13□□□□□ -0.95
LIG3-206ENST00000586058 ABCC5O15440 1437 aa9.13□□□□□ -0.95
LIG3-206ENST00000586058 KIAA1107Q9UPP5 1409 aa9.13□□□□□ -0.95
LIG3-206ENST00000586058 HECW2Q9P2P5 1572 aa9.12□□□□□ -0.95
LIG3-206ENST00000586058 TSPY4P0CV99 314 aa9.12□□□□□ -0.95
LIG3-206ENST00000586058 TSPY10P0CW01 314 aa9.12□□□□□ -0.95
LIG3-206ENST00000586058 POLA2Q14181 598 aa9.12□□□□□ -0.95
LIG3-206ENST00000586058 NAIPQ13075 1403 aa9.12□□□□□ -0.95
LIG3-206ENST00000586058 EIF2AK4Q9P2K8 1649 aaKnown RBP9.12□□□□□ -0.95
LIG3-206ENST00000586058 CLSPNQ9HAW4 1339 aa9.11□□□□□ -0.95
LIG3-206ENST00000586058 TEX14Q8IWB6 1497 aa9.11□□□□□ -0.95
LIG3-206ENST00000586058 CD109Q6YHK3 1445 aa9.11□□□□□ -0.95
LIG3-206ENST00000586058 RICTORQ6R327 1708 aa9.11□□□□□ -0.95
LIG3-206ENST00000586058 ATP7AQ04656 1500 aa9.1□□□□□ -0.95
LIG3-206ENST00000586058 ZNF518AQ6AHZ1 1483 aa9.1□□□□□ -0.95
LIG3-206ENST00000586058 NEO1Q92859 1461 aa9.1□□□□□ -0.95
LIG3-206ENST00000586058 CHIC2Q9UKJ5 165 aa9.1□□□□□ -0.95
LIG3-206ENST00000586058 ZFYVE16Q7Z3T8 1539 aa9.1□□□□□ -0.95
LIG3-206ENST00000586058 DUOX2Q9NRD8 1548 aa9.1□□□□□ -0.95
LIG3-206ENST00000586058 UNC13BO14795 1591 aa9.09□□□□□ -0.95
LIG3-206ENST00000586058 PTPRKQ15262 1439 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms