RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-223ENST00000583595 HAP1P54257 671 aaPredicted RBP10.49□□□□□ -0.73
SS18-223ENST00000583595 ST18O60284 1047 aa10.48□□□□□ -0.73
SS18-223ENST00000583595 POTEGQ6S5H5 508 aa10.47□□□□□ -0.73
SS18-223ENST00000583595 PCDH10Q9P2E7 1040 aa10.46□□□□□ -0.73
SS18-223ENST00000583595 RYDENQ9NUL5 291 aaKnown RBP10.45□□□□□ -0.74
SS18-223ENST00000583595 GTPBP6O43824 516 aaPredicted RBP10.41□□□□□ -0.74
SS18-223ENST00000583595 HOXB3P14651 431 aaPredicted RBP10.41□□□□□ -0.74
SS18-223ENST00000583595 C2orf72A6NCS6 295 aa10.39□□□□□ -0.75
SS18-223ENST00000583595 DOK7Q18PE1 504 aa10.39□□□□□ -0.75
SS18-223ENST00000583595 BCANQ96GW7 911 aa10.38□□□□□ -0.75
SS18-223ENST00000583595 KIF3CO14782 793 aa10.37□□□□□ -0.75
SS18-223ENST00000583595 TMC2Q8TDI7 906 aa10.37□□□□□ -0.75
SS18-223ENST00000583595 ZNF710Q8N1W2 664 aa10.36□□□□□ -0.75
SS18-223ENST00000583595 MARVELD3Q96A59 401 aa10.36□□□□□ -0.75
SS18-223ENST00000583595 BBXQ8WY36 941 aaPredicted RBP10.35□□□□□ -0.75
SS18-223ENST00000583595 RIMBP2O15034 1052 aa10.33□□□□□ -0.76
SS18-223ENST00000583595 HOXB1P14653 301 aaPredicted RBP10.3□□□□□ -0.76
SS18-223ENST00000583595 EMP3P54852 163 aa10.3□□□□□ -0.76
SS18-223ENST00000583595 VSIG10Q8N0Z9 540 aa10.3□□□□□ -0.76
SS18-223ENST00000583595 ZSWIM6Q9HCJ5 1215 aa10.28□□□□□ -0.76
SS18-223ENST00000583595 GPHNQ9NQX3 736 aaPredicted RBP10.28□□□□□ -0.76
SS18-223ENST00000583595 GPR153Q6NV75 609 aa10.26□□□□□ -0.77
SS18-223ENST00000583595 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.26□□□□□ -0.77
SS18-223ENST00000583595 FAM205CA6NFA0 338 aa10.25□□□□□ -0.77
SS18-223ENST00000583595 FOXK1P85037 733 aa10.25□□□□□ -0.77
SS18-223ENST00000583595 ARSIQ5FYB1 569 aa10.25□□□□□ -0.77
SS18-223ENST00000583595 CDAN1Q8IWY9 1227 aa10.25□□□□□ -0.77
SS18-223ENST00000583595 DSG2Q14126 1118 aa10.24□□□□□ -0.77
SS18-223ENST00000583595 CRISPLD2Q9H0B8 497 aa10.24□□□□□ -0.77
SS18-223ENST00000583595 PLPP6Q8IY26 295 aa10.23□□□□□ -0.77
SS18-223ENST00000583595 SPRYD3Q8NCJ5 442 aa10.23□□□□□ -0.77
SS18-223ENST00000583595 POTEB3A0JP26 581 aa10.22□□□□□ -0.77
SS18-223ENST00000583595 SLC34A2O95436 690 aa10.22□□□□□ -0.77
SS18-223ENST00000583595 POTEBQ6S5H4 581 aa10.22□□□□□ -0.77
SS18-223ENST00000583595 KDM2AQ9Y2K7 1162 aa10.22□□□□□ -0.77
SS18-223ENST00000583595 NCKAP5LQ9HCH0 1330 aa10.22□□□□□ -0.77
SS18-223ENST00000583595 PDE4AP27815 886 aa10.21□□□□□ -0.77
SS18-223ENST00000583595 KHSRPQ92945 711 aaKnown RBP eCLIP10.21□□□□□ -0.775e-10■■■□□ 17.6
SS18-223ENST00000583595 HS3ST6Q96QI5 342 aa10.21□□□□□ -0.77
SS18-223ENST00000583595 ERBB3P21860 1342 aa10.21□□□□□ -0.78
SS18-223ENST00000583595 TPRNQ4KMQ1 711 aa10.2□□□□□ -0.78
SS18-223ENST00000583595 PAXIP1Q6ZW49 1069 aaPredicted RBP10.19□□□□□ -0.78
SS18-223ENST00000583595 CADPS2Q86UW7 1296 aa10.19□□□□□ -0.78
SS18-223ENST00000583595 PCDHGA4Q9Y5G9 962 aa10.19□□□□□ -0.78
SS18-223ENST00000583595 CFAP44Q96MT7 982 aa10.18□□□□□ -0.78
SS18-223ENST00000583595 LARP6Q9BRS8 491 aaKnown RBP10.18□□□□□ -0.78
SS18-223ENST00000583595 PPP1R15BQ5SWA1 713 aa10.17□□□□□ -0.78
SS18-223ENST00000583595 NUDT7P0C024 238 aa10.15□□□□□ -0.78
SS18-223ENST00000583595 VARS2Q5ST30 1063 aaKnown RBP10.15□□□□□ -0.78
SS18-223ENST00000583595 PTCD2Q8WV60 388 aaKnown RBP10.15□□□□□ -0.78
SS18-223ENST00000583595 DDX27Q96GQ7 796 aaKnown RBP10.13□□□□□ -0.79
SS18-223ENST00000583595 ZNF316A6NFI3 1004 aaPredicted RBP10.12□□□□□ -0.79
SS18-223ENST00000583595 TBC1D12O60347 775 aa10.11□□□□□ -0.79
SS18-223ENST00000583595 MFSD10Q14728 455 aa10.11□□□□□ -0.79
SS18-223ENST00000583595 UPF1Q92900 1129 aaKnown RBP eCLIP10.1□□□□□ -0.79
SS18-223ENST00000583595 OXER1Q8TDS5 423 aa10.09□□□□□ -0.79
SS18-223ENST00000583595 LHX6Q9UPM6 363 aa10.09□□□□□ -0.79
SS18-223ENST00000583595 KDM4FA0A1W2PPD8 638 aa10.07□□□□□ -0.8
SS18-223ENST00000583595 ZNF687Q8N1G0 1237 aa10.07□□□□□ -0.8
SS18-223ENST00000583595 KRTAP3-3Q9BYR6 98 aa10.07□□□□□ -0.8
SS18-223ENST00000583595 KRTAP3-2Q9BYR7 98 aa10.07□□□□□ -0.8
SS18-223ENST00000583595 EMILIN3Q9NT22 766 aa10.02□□□□□ -0.81
SS18-223ENST00000583595 MAP3K9P80192 1104 aa10□□□□□ -0.81
SS18-223ENST00000583595 TSHZ2Q9NRE2 1034 aa10□□□□□ -0.81
SS18-223ENST00000583595 PSDA5PKW4 1024 aaPredicted RBP9.99□□□□□ -0.81
SS18-223ENST00000583595 SPNS2Q8IVW8 549 aa9.99□□□□□ -0.81
SS18-223ENST00000583595 EVI5O60447 810 aa9.97□□□□□ -0.81
SS18-223ENST00000583595 CAMK2BQ13554 666 aa9.97□□□□□ -0.81
SS18-223ENST00000583595 ANO8Q9HCE9 1232 aaPredicted RBP9.95□□□□□ -0.82
SS18-223ENST00000583595 WDR70Q9NW82 654 aa9.95□□□□□ -0.82
SS18-223ENST00000583595 PBX2P40425 430 aa9.94□□□□□ -0.82
SS18-223ENST00000583595 PPP4R3BQ5MIZ7 849 aa9.94□□□□□ -0.82
SS18-223ENST00000583595 POTEEQ6S8J3 1075 aa9.94□□□□□ -0.82
SS18-223ENST00000583595 AXIN2Q9Y2T1 843 aa9.94□□□□□ -0.82
SS18-223ENST00000583595 ZNF454Q8N9F8 522 aa9.93□□□□□ -0.82
SS18-223ENST00000583595 DPYSL4O14531 572 aa9.92□□□□□ -0.82
SS18-223ENST00000583595 ANKRD13DQ6ZTN6 518 aa9.92□□□□□ -0.82
SS18-223ENST00000583595 LSM11P83369 360 aaKnown RBP eCLIP9.91□□□□□ -0.82
SS18-223ENST00000583595 MMRN1Q13201 1228 aa9.91□□□□□ -0.82
SS18-223ENST00000583595 ARHGAP33O14559 1287 aa9.9□□□□□ -0.82
SS18-223ENST00000583595 FOSBP53539 338 aa9.9□□□□□ -0.82
SS18-223ENST00000583595 E2F4Q16254 413 aa9.9□□□□□ -0.82
SS18-223ENST00000583595 JPH4Q96JJ6 628 aa9.88□□□□□ -0.83
SS18-223ENST00000583595 PSEN2P49810 448 aa9.87□□□□□ -0.83
SS18-223ENST00000583595 ZDHHC16Q969W1 377 aa9.85□□□□□ -0.83
SS18-223ENST00000583595 KCNK17Q96T54 332 aa9.85□□□□□ -0.83
SS18-223ENST00000583595 DMRTA1Q5VZB9 504 aa9.84□□□□□ -0.83
SS18-223ENST00000583595 KCNH8Q96L42 1107 aa9.84□□□□□ -0.83
SS18-223ENST00000583595 BCL2L12Q9HB09 334 aa9.84□□□□□ -0.83
SS18-223ENST00000583595 ADAM33Q9BZ11 813 aa9.83□□□□□ -0.84
SS18-223ENST00000583595 PCDHGA10Q9Y5H3 936 aa9.83□□□□□ -0.84
SS18-223ENST00000583595 TIMELESSQ9UNS1 1208 aa9.82□□□□□ -0.84
SS18-223ENST00000583595 PHF14O94880 888 aa9.81□□□□□ -0.84
SS18-223ENST00000583595 PDIA6Q15084 440 aa9.81□□□□□ -0.84
SS18-223ENST00000583595 ARIH1Q9Y4X5 557 aaPredicted RBP9.81□□□□□ -0.84
SS18-223ENST00000583595 SPDYE16A6NNV3 312 aaPredicted RBP9.8□□□□□ -0.84
SS18-223ENST00000583595 PTPREP23469 700 aa9.8□□□□□ -0.84
SS18-223ENST00000583595 PTGER2P43116 358 aa9.8□□□□□ -0.84
SS18-223ENST00000583595 TYW1BQ6NUM6 668 aa9.8□□□□□ -0.84
SS18-223ENST00000583595 ADGRD1Q6QNK2 874 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms