RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 HCSTQ9UBK5 93 aa12.99□□□□□ -0.33
SMCHD1-209ENST00000583441 KHSRPQ92945 711 aaKnown RBP eCLIP12.93□□□□□ -0.341e-11■■■■□ 25
SMCHD1-209ENST00000583441 PBX2P40425 430 aa12.91□□□□□ -0.34
SMCHD1-209ENST00000583441 SPOCK2Q92563 424 aa12.9□□□□□ -0.34
SMCHD1-209ENST00000583441 SOX12O15370 315 aa12.85□□□□□ -0.35
SMCHD1-209ENST00000583441 AXIN2Q9Y2T1 843 aa12.84□□□□□ -0.35
SMCHD1-209ENST00000583441 MS4A4AQ96JQ5 239 aa12.8□□□□□ -0.36
SMCHD1-209ENST00000583441 NUDT7P0C024 238 aa12.79□□□□□ -0.36
SMCHD1-209ENST00000583441 POTEEQ6S8J3 1075 aa12.77□□□□□ -0.37
SMCHD1-209ENST00000583441 PHF8Q9UPP1 1060 aa12.77□□□□□ -0.37
SMCHD1-209ENST00000583441 ADGRD1Q6QNK2 874 aa12.75□□□□□ -0.37
SMCHD1-209ENST00000583441 TRIM41Q8WV44 630 aa12.75□□□□□ -0.37
SMCHD1-209ENST00000583441 LHX6Q9UPM6 363 aa12.75□□□□□ -0.37
SMCHD1-209ENST00000583441 IFNLR1Q8IU57 520 aaPredicted RBP12.72□□□□□ -0.37
SMCHD1-209ENST00000583441 ARHGAP33O14559 1287 aa12.69□□□□□ -0.38
SMCHD1-209ENST00000583441 IRX2Q9BZI1 471 aaPredicted RBP12.67□□□□□ -0.38
SMCHD1-209ENST00000583441 KCTD12Q96CX2 325 aaKnown RBP12.65□□□□□ -0.38
SMCHD1-209ENST00000583441 PCDHGA4Q9Y5G9 962 aa12.65□□□□□ -0.38
SMCHD1-209ENST00000583441 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.64□□□□□ -0.39
SMCHD1-209ENST00000583441 RGS20O76081 388 aa12.64□□□□□ -0.39
SMCHD1-209ENST00000583441 ZFP91Q96JP5 570 aaPredicted RBP12.64□□□□□ -0.39
SMCHD1-209ENST00000583441 STAC3Q96MF2 364 aa12.64□□□□□ -0.39
SMCHD1-209ENST00000583441 NLRP6P59044 892 aa12.63□□□□□ -0.39
SMCHD1-209ENST00000583441 TK2O00142 265 aa12.62□□□□□ -0.39
SMCHD1-209ENST00000583441 PSDA5PKW4 1024 aaPredicted RBP12.61□□□□□ -0.39
SMCHD1-209ENST00000583441 C2orf72A6NCS6 295 aa12.61□□□□□ -0.39
SMCHD1-209ENST00000583441 RIOK3O14730 519 aaKnown RBP12.61□□□□□ -0.39
SMCHD1-209ENST00000583441 SLC34A2O95436 690 aa12.6□□□□□ -0.39
SMCHD1-209ENST00000583441 KIF3CO14782 793 aa12.59□□□□□ -0.39
SMCHD1-209ENST00000583441 HRO43593 1189 aa12.59□□□□□ -0.39
SMCHD1-209ENST00000583441 VGFO15240 615 aaPredicted RBP12.58□□□□□ -0.4
SMCHD1-209ENST00000583441 DMRTA1Q5VZB9 504 aa12.55□□□□□ -0.4
SMCHD1-209ENST00000583441 PSEN2P49810 448 aa12.53□□□□□ -0.4
SMCHD1-209ENST00000583441 PTPN5P54829 565 aa12.52□□□□□ -0.41
SMCHD1-209ENST00000583441 FBXO22Q8NEZ5 403 aa12.52□□□□□ -0.41
SMCHD1-209ENST00000583441 IFFO2Q5TF58 517 aa12.49□□□□□ -0.41
SMCHD1-209ENST00000583441 TMC2Q8TDI7 906 aa12.49□□□□□ -0.41
SMCHD1-209ENST00000583441 RNF25Q96BH1 459 aaPredicted RBP12.49□□□□□ -0.41
SMCHD1-209ENST00000583441 A0A0G2JS52 829 aa12.44□□□□□ -0.42
SMCHD1-209ENST00000583441 PPP4R3BQ5MIZ7 849 aa12.43□□□□□ -0.42
SMCHD1-209ENST00000583441 KCNH8Q96L42 1107 aa12.43□□□□□ -0.42
SMCHD1-209ENST00000583441 BCL11BQ9C0K0 894 aaPredicted RBP12.42□□□□□ -0.42
SMCHD1-209ENST00000583441 MFRPQ9BY79 579 aa12.4□□□□□ -0.42
SMCHD1-209ENST00000583441 TAOK2Q9UL54 1235 aa12.39□□□□□ -0.43
SMCHD1-209ENST00000583441 STK24Q9Y6E0 443 aa12.38□□□□□ -0.43
SMCHD1-209ENST00000583441 KDM4FA0A1W2PPD8 638 aa12.37□□□□□ -0.43
SMCHD1-209ENST00000583441 Q6ZNB5 142 aa12.37□□□□□ -0.43
SMCHD1-209ENST00000583441 KCNK17Q96T54 332 aa12.36□□□□□ -0.43
SMCHD1-209ENST00000583441 PTCD2Q8WV60 388 aaKnown RBP12.34□□□□□ -0.43
SMCHD1-209ENST00000583441 VPS9D1Q9Y2B5 631 aa12.34□□□□□ -0.43
SMCHD1-209ENST00000583441 GOLGA8CPA6NN73 597 aa12.32□□□□□ -0.44
SMCHD1-209ENST00000583441 THSD4Q6ZMP0 1018 aa12.32□□□□□ -0.44
SMCHD1-209ENST00000583441 TBC1D12O60347 775 aa12.28□□□□□ -0.44
SMCHD1-209ENST00000583441 WNT2BQ93097 391 aa12.26□□□□□ -0.45
SMCHD1-209ENST00000583441 STK25O00506 426 aa12.25□□□□□ -0.45
SMCHD1-209ENST00000583441 SLC4A5Q9BY07 1137 aa12.22□□□□□ -0.45
SMCHD1-209ENST00000583441 PLPP6Q8IY26 295 aa12.21□□□□□ -0.45
SMCHD1-209ENST00000583441 MRPL50Q8N5N7 158 aaKnown RBP12.21□□□□□ -0.45
SMCHD1-209ENST00000583441 BHMG1C9JSJ3 638 aaPredicted RBP12.19□□□□□ -0.46
SMCHD1-209ENST00000583441 FOXK1P85037 733 aa12.17□□□□□ -0.46
SMCHD1-209ENST00000583441 ZNF454Q8N9F8 522 aa12.15□□□□□ -0.46
SMCHD1-209ENST00000583441 BCL2L12Q9HB09 334 aa12.14□□□□□ -0.47
SMCHD1-209ENST00000583441 PPP1R37O75864 691 aa12.13□□□□□ -0.47
SMCHD1-209ENST00000583441 PTPREP23469 700 aa12.12□□□□□ -0.47
SMCHD1-209ENST00000583441 LAPTM4AQ15012 233 aa12.12□□□□□ -0.47
SMCHD1-209ENST00000583441 NBPF3Q9H094 633 aa12.11□□□□□ -0.47
SMCHD1-209ENST00000583441 ITGBL1O95965 494 aaPredicted RBP12.1□□□□□ -0.47
SMCHD1-209ENST00000583441 ZBED2Q9BTP6 218 aa12.1□□□□□ -0.47
SMCHD1-209ENST00000583441 GPHNQ9NQX3 736 aaPredicted RBP12.09□□□□□ -0.47
SMCHD1-209ENST00000583441 TRAF7Q6Q0C0 670 aa12.08□□□□□ -0.48
SMCHD1-209ENST00000583441 DSG2Q14126 1118 aa12.07□□□□□ -0.48
SMCHD1-209ENST00000583441 GFRA3O60609 400 aa12.02□□□□□ -0.49
SMCHD1-209ENST00000583441 ANKK1Q8NFD2 765 aa12.02□□□□□ -0.49
SMCHD1-209ENST00000583441 UPF1Q92900 1129 aaKnown RBP eCLIP12.02□□□□□ -0.49
SMCHD1-209ENST00000583441 FOSBP53539 338 aa12.01□□□□□ -0.49
SMCHD1-209ENST00000583441 OXER1Q8TDS5 423 aa12□□□□□ -0.49
SMCHD1-209ENST00000583441 LCE2BO14633 110 aa11.99□□□□□ -0.49
SMCHD1-209ENST00000583441 KCNC4Q03721 635 aa11.99□□□□□ -0.49
SMCHD1-209ENST00000583441 NYAP1Q6ZVC0 841 aa11.95□□□□□ -0.5
SMCHD1-209ENST00000583441 ECM2O94769 699 aaPredicted RBP11.94□□□□□ -0.5
SMCHD1-209ENST00000583441 BCAMP50895 628 aa11.94□□□□□ -0.5
SMCHD1-209ENST00000583441 ZDHHC16Q969W1 377 aa11.94□□□□□ -0.5
SMCHD1-209ENST00000583441 JPH4Q96JJ6 628 aa11.92□□□□□ -0.5
SMCHD1-209ENST00000583441 ADAM33Q9BZ11 813 aa11.92□□□□□ -0.5
SMCHD1-209ENST00000583441 RABGEF1Q9UJ41 708 aa11.91□□□□□ -0.5
SMCHD1-209ENST00000583441 SOWAHBA6NEL2 793 aa11.9□□□□□ -0.5
SMCHD1-209ENST00000583441 ZNF787Q6DD87 383 aa11.89□□□□□ -0.51
SMCHD1-209ENST00000583441 WBP1LQ9NX94 342 aa11.87□□□□□ -0.51
SMCHD1-209ENST00000583441 NRG2O14511 850 aaPredicted RBP11.86□□□□□ -0.51
SMCHD1-209ENST00000583441 LAPTM4BQ86VI4 370 aa11.86□□□□□ -0.51
SMCHD1-209ENST00000583441 ANO8Q9HCE9 1232 aaPredicted RBP11.86□□□□□ -0.51
SMCHD1-209ENST00000583441 PPP1R3GB7ZBB8 358 aa11.84□□□□□ -0.51
SMCHD1-209ENST00000583441 PROX2Q3B8N5 592 aa11.84□□□□□ -0.51
SMCHD1-209ENST00000583441 RGL2O15211 777 aa11.82□□□□□ -0.52
SMCHD1-209ENST00000583441 EVI5O60447 810 aa11.82□□□□□ -0.52
SMCHD1-209ENST00000583441 ZFRQ96KR1 1074 aaKnown RBP11.82□□□□□ -0.52
SMCHD1-209ENST00000583441 PRKD2Q9BZL6 878 aa11.8□□□□□ -0.52
SMCHD1-209ENST00000583441 PPP1R15BQ5SWA1 713 aa11.79□□□□□ -0.52
SMCHD1-209ENST00000583441 ZNF775Q96BV0 537 aaPredicted RBP11.79□□□□□ -0.52
SMCHD1-209ENST00000583441 KIAA1468Q9P260 1216 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms