RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 TMC2Q8TDI7 906 aa16.31■□□□□ 0.2
SS18-214ENST00000580003 PDE4AP27815 886 aa16.29■□□□□ 0.2
SS18-214ENST00000580003 SLAIN1Q8ND83 568 aa16.27■□□□□ 0.2
SS18-214ENST00000580003 OTUD5Q96G74 571 aa16.26■□□□□ 0.19
SS18-214ENST00000580003 TMEM92Q6UXU6 159 aa16.25■□□□□ 0.19
SS18-214ENST00000580003 CRISPLD2Q9H0B8 497 aa16.25■□□□□ 0.19
SS18-214ENST00000580003 GPHNQ9NQX3 736 aaPredicted RBP16.24■□□□□ 0.19
SS18-214ENST00000580003 C2orf72A6NCS6 295 aa16.23■□□□□ 0.19
SS18-214ENST00000580003 NCKAP5LQ9HCH0 1330 aa16.22■□□□□ 0.19
SS18-214ENST00000580003 LARP6Q9BRS8 491 aaKnown RBP16.22■□□□□ 0.19
SS18-214ENST00000580003 SLC24A1O60721 1099 aa16.2■□□□□ 0.18
SS18-214ENST00000580003 KIF3CO14782 793 aa16.19■□□□□ 0.18
SS18-214ENST00000580003 VSIG10Q8N0Z9 540 aa16.18■□□□□ 0.18
SS18-214ENST00000580003 WDR70Q9NW82 654 aa16.18■□□□□ 0.18
SS18-214ENST00000580003 DDX27Q96GQ7 796 aaKnown RBP16.17■□□□□ 0.18
SS18-214ENST00000580003 FOXK1P85037 733 aa16.14■□□□□ 0.17
SS18-214ENST00000580003 DSG2Q14126 1118 aa16.13■□□□□ 0.17
SS18-214ENST00000580003 MFSD10Q14728 455 aa16.13■□□□□ 0.17
SS18-214ENST00000580003 PPP1R15BQ5SWA1 713 aa16.13■□□□□ 0.17
SS18-214ENST00000580003 PLPP6Q8IY26 295 aa16.1■□□□□ 0.17
SS18-214ENST00000580003 KDM2AQ9Y2K7 1162 aa16.08■□□□□ 0.16
SS18-214ENST00000580003 SNPHO15079 494 aa16.05■□□□□ 0.16
SS18-214ENST00000580003 DOK7Q18PE1 504 aa16■□□□□ 0.15
SS18-214ENST00000580003 E2F4Q16254 413 aa15.99■□□□□ 0.15
SS18-214ENST00000580003 RIMBP2O15034 1052 aa15.96■□□□□ 0.15
SS18-214ENST00000580003 HOXB3P14651 431 aaPredicted RBP15.94■□□□□ 0.14
SS18-214ENST00000580003 CAMK2BQ13554 666 aa15.94■□□□□ 0.14
SS18-214ENST00000580003 ZNF710Q8N1W2 664 aa15.94■□□□□ 0.14
SS18-214ENST00000580003 SLC34A2O95436 690 aa15.93■□□□□ 0.14
SS18-214ENST00000580003 P3H3Q8IVL6 736 aa15.92■□□□□ 0.14
SS18-214ENST00000580003 UPF1Q92900 1129 aaKnown RBP eCLIP15.9■□□□□ 0.14
SS18-214ENST00000580003 TBC1D12O60347 775 aa15.89■□□□□ 0.13
SS18-214ENST00000580003 PTCD2Q8WV60 388 aaKnown RBP15.87■□□□□ 0.13
SS18-214ENST00000580003 ZSWIM6Q9HCJ5 1215 aa15.87■□□□□ 0.13
SS18-214ENST00000580003 EMILIN3Q9NT22 766 aa15.87■□□□□ 0.13
SS18-214ENST00000580003 OXER1Q8TDS5 423 aa15.86■□□□□ 0.13
SS18-214ENST00000580003 MAP3K9P80192 1104 aa15.85■□□□□ 0.13
SS18-214ENST00000580003 KCNV2Q8TDN2 545 aa15.85■□□□□ 0.13
SS18-214ENST00000580003 FAM163AQ96GL9 167 aaPredicted RBP15.84■□□□□ 0.13
SS18-214ENST00000580003 PCDHGA4Q9Y5G9 962 aa15.84■□□□□ 0.13
SS18-214ENST00000580003 ARHGEF1Q92888 912 aaKnown RBP15.81■□□□□ 0.12
SS18-214ENST00000580003 DPYSL4O14531 572 aa15.8■□□□□ 0.12
SS18-214ENST00000580003 ARSIQ5FYB1 569 aa15.8■□□□□ 0.12
SS18-214ENST00000580003 ARIH1Q9Y4X5 557 aaPredicted RBP15.79■□□□□ 0.12
SS18-214ENST00000580003 GPR153Q6NV75 609 aa15.78■□□□□ 0.12
SS18-214ENST00000580003 ZNF316A6NFI3 1004 aaPredicted RBP15.77■□□□□ 0.12
SS18-214ENST00000580003 ST18O60284 1047 aa15.77■□□□□ 0.12
SS18-214ENST00000580003 HOXB1P14653 301 aaPredicted RBP15.76■□□□□ 0.11
SS18-214ENST00000580003 KHSRPQ92945 711 aaKnown RBP eCLIP15.73■□□□□ 0.113e-8■■■□□ 19.1
SS18-214ENST00000580003 SPDYE16A6NNV3 312 aaPredicted RBP15.72■□□□□ 0.11
SS18-214ENST00000580003 EVI5O60447 810 aa15.72■□□□□ 0.11
SS18-214ENST00000580003 NUDT7P0C024 238 aa15.72■□□□□ 0.11
SS18-214ENST00000580003 PDIA6Q15084 440 aa15.68■□□□□ 0.1
SS18-214ENST00000580003 EMP3P54852 163 aa15.65■□□□□ 0.1
SS18-214ENST00000580003 MARVELD3Q96A59 401 aa15.64■□□□□ 0.09
SS18-214ENST00000580003 KDM4FA0A1W2PPD8 638 aa15.63■□□□□ 0.09
SS18-214ENST00000580003 ANO8Q9HCE9 1232 aaPredicted RBP15.63■□□□□ 0.09
SS18-214ENST00000580003 NBR1Q14596 966 aa15.62■□□□□ 0.09
SS18-214ENST00000580003 LCE2DQ5TA82 110 aaPredicted RBP15.62■□□□□ 0.09
SS18-214ENST00000580003 LHX6Q9UPM6 363 aa15.6■□□□□ 0.09
SS18-214ENST00000580003 ERBB3P21860 1342 aa15.59■□□□□ 0.09
SS18-214ENST00000580003 PSDA5PKW4 1024 aaPredicted RBP15.56■□□□□ 0.08
SS18-214ENST00000580003 SEMA3EO15041 775 aa15.55■□□□□ 0.08
SS18-214ENST00000580003 PTGER2P43116 358 aa15.55■□□□□ 0.08
SS18-214ENST00000580003 FAM205CA6NFA0 338 aa15.54■□□□□ 0.08
SS18-214ENST00000580003 DDX12PQ92771 950 aa15.54■□□□□ 0.08
SS18-214ENST00000580003 GRXCR2A6NFK2 248 aa15.51■□□□□ 0.07
SS18-214ENST00000580003 VARS2Q5ST30 1063 aaKnown RBP15.51■□□□□ 0.07
SS18-214ENST00000580003 ZNF454Q8N9F8 522 aa15.51■□□□□ 0.07
SS18-214ENST00000580003 JPH4Q96JJ6 628 aa15.51■□□□□ 0.07
SS18-214ENST00000580003 PHF14O94880 888 aa15.49■□□□□ 0.07
SS18-214ENST00000580003 FOSBP53539 338 aa15.49■□□□□ 0.07
SS18-214ENST00000580003 PPP4R3BQ5MIZ7 849 aa15.49■□□□□ 0.07
SS18-214ENST00000580003 BCANQ96GW7 911 aa15.49■□□□□ 0.07
SS18-214ENST00000580003 TESPA1A2RU30 521 aaPredicted RBP15.48■□□□□ 0.07
SS18-214ENST00000580003 SMYD5Q6GMV2 418 aa15.48■□□□□ 0.07
SS18-214ENST00000580003 MLLT3P42568 568 aaPredicted RBP15.47■□□□□ 0.07
SS18-214ENST00000580003 HS3ST6Q96QI5 342 aa15.47■□□□□ 0.07
SS18-214ENST00000580003 EPAS1Q99814 870 aa15.47■□□□□ 0.07
SS18-214ENST00000580003 TYW1BQ6NUM6 668 aa15.46■□□□□ 0.07
SS18-214ENST00000580003 PCDHGA10Q9Y5H3 936 aa15.46■□□□□ 0.07
SS18-214ENST00000580003 TULP1O00294 542 aaPredicted RBP15.45■□□□□ 0.06
SS18-214ENST00000580003 ZDHHC16Q969W1 377 aa15.44■□□□□ 0.06
SS18-214ENST00000580003 POTEGQ6S5H5 508 aa15.43■□□□□ 0.06
SS18-214ENST00000580003 FBXW7Q969H0 707 aa15.43■□□□□ 0.06
SS18-214ENST00000580003 POTEMA6NI47 508 aa15.42■□□□□ 0.06
SS18-214ENST00000580003 POTEB3A0JP26 581 aa15.38■□□□□ 0.05
SS18-214ENST00000580003 OSBPP22059 807 aa15.38■□□□□ 0.05
SS18-214ENST00000580003 POTEBQ6S5H4 581 aa15.38■□□□□ 0.05
SS18-214ENST00000580003 RBM33Q96EV2 1170 aaKnown RBP15.38■□□□□ 0.05
SS18-214ENST00000580003 ZNF687Q8N1G0 1237 aa15.37■□□□□ 0.05
SS18-214ENST00000580003 ADAM33Q9BZ11 813 aa15.36■□□□□ 0.05
SS18-214ENST00000580003 MAP3K7O43318 606 aa15.35■□□□□ 0.05
SS18-214ENST00000580003 EN1Q05925 392 aaPredicted RBP15.35■□□□□ 0.05
SS18-214ENST00000580003 KCNH8Q96L42 1107 aa15.35■□□□□ 0.05
SS18-214ENST00000580003 BCL2L12Q9HB09 334 aa15.34■□□□□ 0.05
SS18-214ENST00000580003 PTPREP23469 700 aa15.31■□□□□ 0.04
SS18-214ENST00000580003 PBX2P40425 430 aa15.31■□□□□ 0.04
SS18-214ENST00000580003 PRIM1P49642 420 aaKnown RBP15.29■□□□□ 0.04
SS18-214ENST00000580003 C6orf132Q5T0Z8 1188 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms