RNA–Protein interactions for RNA: ENST00000578995.5

SMARCE1-215, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 2

Gene SMARCE1, Length 534 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-215ENST00000578995 SCRIBQ14160 1630 aa7.58□□□□□ -1.2
SMARCE1-215ENST00000578995 ZNF316A6NFI3 1004 aaPredicted RBP7.57□□□□□ -1.2
SMARCE1-215ENST00000578995 EHMT2Q96KQ7 1210 aa7.57□□□□□ -1.2
SMARCE1-215ENST00000578995 PBX2P40425 430 aa7.56□□□□□ -1.2
SMARCE1-215ENST00000578995 ARSIQ5FYB1 569 aa7.55□□□□□ -1.2
SMARCE1-215ENST00000578995 RGS20O76081 388 aa7.53□□□□□ -1.2
SMARCE1-215ENST00000578995 DCAF8L2P0C7V8 631 aa7.52□□□□□ -1.21
SMARCE1-215ENST00000578995 TMEM92Q6UXU6 159 aa7.52□□□□□ -1.21
SMARCE1-215ENST00000578995 IRX2Q9BZI1 471 aaPredicted RBP7.52□□□□□ -1.21
SMARCE1-215ENST00000578995 MICALL2Q8IY33 904 aa7.51□□□□□ -1.21
SMARCE1-215ENST00000578995 KLHL34Q8N239 644 aa7.5□□□□□ -1.21
SMARCE1-215ENST00000578995 SHROOM4Q9ULL8 1493 aa7.48□□□□□ -1.21
SMARCE1-215ENST00000578995 KHSRPQ92945 711 aaKnown RBP eCLIP7.46□□□□□ -1.22
SMARCE1-215ENST00000578995 FBXO3Q9UK99 471 aa7.46□□□□□ -1.22
SMARCE1-215ENST00000578995 EFCAB3Q8N7B9 438 aa7.45□□□□□ -1.22
SMARCE1-215ENST00000578995 ADGRD1Q6QNK2 874 aa7.44□□□□□ -1.22
SMARCE1-215ENST00000578995 AXIN2Q9Y2T1 843 aa7.44□□□□□ -1.22
SMARCE1-215ENST00000578995 POTEEQ6S8J3 1075 aa7.43□□□□□ -1.22
SMARCE1-215ENST00000578995 IFFO2Q5TF58 517 aa7.4□□□□□ -1.22
SMARCE1-215ENST00000578995 TK2O00142 265 aa7.38□□□□□ -1.23
SMARCE1-215ENST00000578995 ARHGAP33O14559 1287 aa7.38□□□□□ -1.23
SMARCE1-215ENST00000578995 SOX12O15370 315 aa7.38□□□□□ -1.23
SMARCE1-215ENST00000578995 NUDT7P0C024 238 aa7.38□□□□□ -1.23
SMARCE1-215ENST00000578995 KCTD12Q96CX2 325 aaKnown RBP7.37□□□□□ -1.23
SMARCE1-215ENST00000578995 LHX6Q9UPM6 363 aa7.37□□□□□ -1.23
SMARCE1-215ENST00000578995 STAC3Q96MF2 364 aa7.36□□□□□ -1.23
SMARCE1-215ENST00000578995 EIF4G1Q04637 1599 aaKnown RBP7.35□□□□□ -1.23
SMARCE1-215ENST00000578995 HRO43593 1189 aa7.35□□□□□ -1.23
SMARCE1-215ENST00000578995 FKBP8Q14318 412 aa7.34□□□□□ -1.23
SMARCE1-215ENST00000578995 CIZ1Q9ULV3 898 aaPredicted RBP7.34□□□□□ -1.23
SMARCE1-215ENST00000578995 PSDA5PKW4 1024 aaPredicted RBP7.33□□□□□ -1.24
SMARCE1-215ENST00000578995 VASPP50552 380 aaPredicted RBP7.33□□□□□ -1.24
SMARCE1-215ENST00000578995 A0A0G2JS52 829 aa7.32□□□□□ -1.24
SMARCE1-215ENST00000578995 Q6ZNB5 142 aa7.32□□□□□ -1.24
SMARCE1-215ENST00000578995 MS4A4AQ96JQ5 239 aa7.32□□□□□ -1.24
SMARCE1-215ENST00000578995 PCDHGA4Q9Y5G9 962 aa7.31□□□□□ -1.24
SMARCE1-215ENST00000578995 SMARCA4P51532 1647 aa7.3□□□□□ -1.24
SMARCE1-215ENST00000578995 CC2D2AQ9P2K1 1620 aa7.3□□□□□ -1.24
SMARCE1-215ENST00000578995 SLC34A2O95436 690 aa7.29□□□□□ -1.24
SMARCE1-215ENST00000578995 CECR2Q9BXF3 1484 aa7.29□□□□□ -1.24
SMARCE1-215ENST00000578995 PTPN5P54829 565 aa7.28□□□□□ -1.24
SMARCE1-215ENST00000578995 DMRTA1Q5VZB9 504 aa7.27□□□□□ -1.25
SMARCE1-215ENST00000578995 PHF8Q9UPP1 1060 aa7.27□□□□□ -1.25
SMARCE1-215ENST00000578995 PEG3Q9GZU2 1588 aa7.26□□□□□ -1.25
SMARCE1-215ENST00000578995 SPOCK2Q92563 424 aa7.26□□□□□ -1.25
SMARCE1-215ENST00000578995 BAZ1AQ9NRL2 1556 aaPredicted RBP7.25□□□□□ -1.25
SMARCE1-215ENST00000578995 TRIM41Q8WV44 630 aa7.25□□□□□ -1.25
SMARCE1-215ENST00000578995 C2orf72A6NCS6 295 aa7.24□□□□□ -1.25
SMARCE1-215ENST00000578995 KIF3CO14782 793 aa7.24□□□□□ -1.25
SMARCE1-215ENST00000578995 PSEN2P49810 448 aa7.24□□□□□ -1.25
SMARCE1-215ENST00000578995 MROH2BQ7Z745 1585 aa7.24□□□□□ -1.25
SMARCE1-215ENST00000578995 KCNH8Q96L42 1107 aa7.22□□□□□ -1.25
SMARCE1-215ENST00000578995 NLRP6P59044 892 aa7.21□□□□□ -1.26
SMARCE1-215ENST00000578995 WIZO95785 1651 aa7.2□□□□□ -1.26
SMARCE1-215ENST00000578995 PPP4R3BQ5MIZ7 849 aa7.19□□□□□ -1.26
SMARCE1-215ENST00000578995 HMGXB3Q12766 1538 aa7.18□□□□□ -1.26
SMARCE1-215ENST00000578995 LAPTM4AQ15012 233 aa7.18□□□□□ -1.26
SMARCE1-215ENST00000578995 THSD4Q6ZMP0 1018 aa7.18□□□□□ -1.26
SMARCE1-215ENST00000578995 ATAD2BQ9ULI0 1458 aa7.17□□□□□ -1.26
SMARCE1-215ENST00000578995 SMARCA2P51531 1590 aa7.17□□□□□ -1.26
SMARCE1-215ENST00000578995 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.16□□□□□ -1.26
SMARCE1-215ENST00000578995 ZFP91Q96JP5 570 aaPredicted RBP7.16□□□□□ -1.26
SMARCE1-215ENST00000578995 VPS9D1Q9Y2B5 631 aa7.16□□□□□ -1.26
SMARCE1-215ENST00000578995 NCAPD3P42695 1498 aa7.16□□□□□ -1.26
SMARCE1-215ENST00000578995 KDM4FA0A1W2PPD8 638 aa7.15□□□□□ -1.26
SMARCE1-215ENST00000578995 TMC2Q8TDI7 906 aa7.15□□□□□ -1.26
SMARCE1-215ENST00000578995 GOLGA8CPA6NN73 597 aa7.14□□□□□ -1.27
SMARCE1-215ENST00000578995 RIOK3O14730 519 aaKnown RBP7.14□□□□□ -1.27
SMARCE1-215ENST00000578995 VGFO15240 615 aaPredicted RBP7.14□□□□□ -1.27
SMARCE1-215ENST00000578995 TRAF7Q6Q0C0 670 aa7.14□□□□□ -1.27
SMARCE1-215ENST00000578995 RSF1Q96T23 1441 aaPredicted RBP7.14□□□□□ -1.27
SMARCE1-215ENST00000578995 KCNK17Q96T54 332 aa7.14□□□□□ -1.27
SMARCE1-215ENST00000578995 FBXO22Q8NEZ5 403 aa7.13□□□□□ -1.27
SMARCE1-215ENST00000578995 IFNLR1Q8IU57 520 aaPredicted RBP7.12□□□□□ -1.27
SMARCE1-215ENST00000578995 PTCD2Q8WV60 388 aaKnown RBP7.12□□□□□ -1.27
SMARCE1-215ENST00000578995 WNT2BQ93097 391 aa7.12□□□□□ -1.27
SMARCE1-215ENST00000578995 SLC4A5Q9BY07 1137 aa7.11□□□□□ -1.27
SMARCE1-215ENST00000578995 TOP2AP11388 1531 aaKnown RBP7.1□□□□□ -1.27
SMARCE1-215ENST00000578995 ITGBL1O95965 494 aaPredicted RBP7.09□□□□□ -1.27
SMARCE1-215ENST00000578995 BAZ1BQ9UIG0 1483 aaKnown RBP7.09□□□□□ -1.27
SMARCE1-215ENST00000578995 BHMG1C9JSJ3 638 aaPredicted RBP7.08□□□□□ -1.28
SMARCE1-215ENST00000578995 LCE2BO14633 110 aa7.08□□□□□ -1.28
SMARCE1-215ENST00000578995 MRPL50Q8N5N7 158 aaKnown RBP7.08□□□□□ -1.28
SMARCE1-215ENST00000578995 PRDM2Q13029 1718 aa7.07□□□□□ -1.28
SMARCE1-215ENST00000578995 TBC1D12O60347 775 aa7.06□□□□□ -1.28
SMARCE1-215ENST00000578995 GFRA3O60609 400 aa7.06□□□□□ -1.28
SMARCE1-215ENST00000578995 RNF25Q96BH1 459 aaPredicted RBP7.05□□□□□ -1.28
SMARCE1-215ENST00000578995 MFRPQ9BY79 579 aa7.04□□□□□ -1.28
SMARCE1-215ENST00000578995 ZNF787Q6DD87 383 aa7.03□□□□□ -1.28
SMARCE1-215ENST00000578995 NBPF3Q9H094 633 aa7.03□□□□□ -1.28
SMARCE1-215ENST00000578995 TAOK2Q9UL54 1235 aa7.03□□□□□ -1.28
SMARCE1-215ENST00000578995 BCL11BQ9C0K0 894 aaPredicted RBP7.01□□□□□ -1.29
SMARCE1-215ENST00000578995 BCL2L12Q9HB09 334 aa7.01□□□□□ -1.29
SMARCE1-215ENST00000578995 KIF21AQ7Z4S6 1674 aa7□□□□□ -1.29
SMARCE1-215ENST00000578995 NRG2O14511 850 aaPredicted RBP6.99□□□□□ -1.29
SMARCE1-215ENST00000578995 PTPREP23469 700 aa6.99□□□□□ -1.29
SMARCE1-215ENST00000578995 KCNC4Q03721 635 aa6.99□□□□□ -1.29
SMARCE1-215ENST00000578995 NYAP1Q6ZVC0 841 aa6.99□□□□□ -1.29
SMARCE1-215ENST00000578995 ZNF775Q96BV0 537 aaPredicted RBP6.99□□□□□ -1.29
SMARCE1-215ENST00000578995 LAMC3Q9Y6N6 1575 aa6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms