RNA–Protein interactions for RNA: ENST00000578218.5

THRA-208, Transcript of thyroid hormone receptor alpha, human

TSL 4

Gene THRA, Length 907 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
THRA-208	ENST00000578218	MAGI2	Q86UL8	1455 aa		41.1	■■■■■ 4.17
THRA-208	ENST00000578218	YEATS2	Q9ULM3	1422 aa		41.1	■■■■■ 4.17
THRA-208	ENST00000578218	CDK11A	Q9UQ88	783 aa	Predicted RBP	41.09	■■■■■ 4.17
THRA-208	ENST00000578218	SIGLEC1	Q9BZZ2	1709 aa		41.09	■■■■■ 4.17
THRA-208	ENST00000578218	SCAPER	Q9BY12	1400 aa		41.08	■■■■■ 4.17
THRA-208	ENST00000578218	PCF11	O94913	1555 aa	Known RBP	41.04	■■■■■ 4.16
THRA-208	ENST00000578218	CLIP1	P30622	1438 aa		41.03	■■■■■ 4.16
THRA-208	ENST00000578218	TRO	Q12816	1431 aa	Predicted RBP	41.03	■■■■■ 4.16
THRA-208	ENST00000578218	ARHGAP5	Q13017	1502 aa		40.99	■■■■■ 4.15
THRA-208	ENST00000578218	FER1L4	A9Z1Z3	1794 aa		40.99	■■■■■ 4.15
THRA-208	ENST00000578218	EFCAB2	Q5VUJ9	269 aa		40.95	■■■■■ 4.15
THRA-208	ENST00000578218	LMTK3	Q96Q04	1460 aa		40.94	■■■■■ 4.14
THRA-208	ENST00000578218	CCDC18	Q5T9S5	1454 aa		40.91	■■■■■ 4.14
THRA-208	ENST00000578218	ZNF518A	Q6AHZ1	1483 aa		40.9	■■■■■ 4.14
THRA-208	ENST00000578218	C9orf84	Q5VXU9	1444 aa		40.89	■■■■■ 4.14
THRA-208	ENST00000578218	CDC42BPB	Q9Y5S2	1711 aa		40.87	■■■■■ 4.13
THRA-208	ENST00000578218	CASKIN1	Q8WXD9	1431 aa		40.86	■■■■■ 4.13
THRA-208	ENST00000578218	PREX2	Q70Z35	1606 aa		40.85	■■■■■ 4.13
THRA-208	ENST00000578218	ATP10A	O60312	1499 aa		40.85	■■■■■ 4.13
THRA-208	ENST00000578218	PLPPR3	Q6T4P5	718 aa		40.85	■■■■■ 4.13
THRA-208	ENST00000578218	KDM5C	P41229	1560 aa		40.84	■■■■■ 4.13
THRA-208	ENST00000578218	MLEC	Q14165	292 aa		40.84	■■■■■ 4.13
THRA-208	ENST00000578218	ARHGEF12	Q9NZN5	1544 aa		40.78	■■■■■ 4.12
THRA-208	ENST00000578218	FYCO1	Q9BQS8	1478 aa		40.77	■■■■■ 4.12
THRA-208	ENST00000578218	ABCC1	P33527	1531 aa		40.73	■■■■■ 4.11
THRA-208	ENST00000578218	ITSN2	Q9NZM3	1697 aa		40.73	■■■■■ 4.11
THRA-208	ENST00000578218	DIP2C	Q9Y2E4	1556 aa		40.73	■■■■■ 4.11
THRA-208	ENST00000578218	CDC42BPA	Q5VT25	1732 aa		40.71	■■■■■ 4.11
THRA-208	ENST00000578218	MYT1L	Q9UL68	1186 aa		40.7	■■■■■ 4.11
THRA-208	ENST00000578218	ABCA6	Q8N139	1617 aa		40.69	■■■■■ 4.1
THRA-208	ENST00000578218	AFAP1	Q8N556	730 aa		40.67	■■■■■ 4.1
THRA-208	ENST00000578218	RERE	Q9P2R6	1566 aa		40.65	■■■■■ 4.1
THRA-208	ENST00000578218	PREX1	Q8TCU6	1659 aa		40.63	■■■■■ 4.1
THRA-208	ENST00000578218	HSPA2	P54652	639 aa		40.63	■■■■■ 4.09
THRA-208	ENST00000578218	MLH3	Q9UHC1	1453 aa		40.6	■■■■■ 4.09
THRA-208	ENST00000578218	TRAPPC8	Q9Y2L5	1435 aa		40.58	■■■■■ 4.09
THRA-208	ENST00000578218	FBXO41	Q8TF61	875 aa		40.56	■■■■■ 4.08
THRA-208	ENST00000578218	KIDINS220	Q9ULH0	1771 aa		40.51	■■■■■ 4.08
THRA-208	ENST00000578218	SAMD9L	Q8IVG5	1584 aa		40.5	■■■■■ 4.07
THRA-208	ENST00000578218	AGL	P35573	1532 aa		40.47	■■■■■ 4.07
THRA-208	ENST00000578218	SYCP2	Q9BX26	1530 aa		40.47	■■■■■ 4.07
THRA-208	ENST00000578218	CEBPA	P49715	358 aa	Predicted RBP	40.44	■■■■■ 4.06
THRA-208	ENST00000578218	C3	P01024	1663 aa		40.43	■■■■■ 4.06
THRA-208	ENST00000578218	ZNF777	Q9ULD5	760 aa	Predicted RBP	40.41	■■■■■ 4.06
THRA-208	ENST00000578218	GPATCH8	Q9UKJ3	1502 aa	Known RBP	40.41	■■■■■ 4.06
THRA-208	ENST00000578218	UHRF1BP1	Q6BDS2	1440 aa		40.38	■■■■■ 4.05
THRA-208	ENST00000578218	ESF1	Q9H501	851 aa	Known RBP	40.35	■■■■■ 4.05
THRA-208	ENST00000578218	MTUS2	Q5JR59	1369 aa		40.33	■■■■■ 4.05
THRA-208	ENST00000578218	CCNB3	Q8WWL7	1395 aa		40.31	■■■■■ 4.04
THRA-208	ENST00000578218	PLEKHH2	Q8IVE3	1493 aa		40.31	■■■■■ 4.04
THRA-208	ENST00000578218	SETD1B	Q9UPS6	1966 aa	Known RBP	40.3	■■■■■ 4.04
THRA-208	ENST00000578218	ATP7A	Q04656	1500 aa		40.3	■■■■■ 4.04
THRA-208	ENST00000578218	INO80	Q9ULG1	1556 aa	Predicted RBP	40.29	■■■■■ 4.04
THRA-208	ENST00000578218	SUPT6H	Q7KZ85	1726 aa	Known RBP	40.28	■■■■■ 4.04
THRA-208	ENST00000578218	EHBP1L1	Q8N3D4	1523 aa		40.28	■■■■■ 4.04
THRA-208	ENST00000578218	CNTLN	Q9NXG0	1405 aa		40.26	■■■■■ 4.04
THRA-208	ENST00000578218	STRC	Q7RTU9	1775 aa		40.26	■■■■■ 4.04
THRA-208	ENST00000578218	SPAG9	O60271	1321 aa	Known RBP	40.26	■■■■■ 4.04
THRA-208	ENST00000578218	CFDP1	Q9UEE9	299 aa	Predicted RBP	40.25	■■■■■ 4.03
THRA-208	ENST00000578218	MROH2A	A6NES4	1674 aa		40.24	■■■■■ 4.03
THRA-208	ENST00000578218	KIAA1107	Q9UPP5	1409 aa		40.24	■■■■■ 4.03
THRA-208	ENST00000578218	TIAM1	Q13009	1591 aa		40.23	■■■■■ 4.03
THRA-208	ENST00000578218	HNRNPM	P52272	730 aa	Known RBP eCLIP	40.22	■■■■■ 4.03
THRA-208	ENST00000578218	CEP162	Q5TB80	1403 aa		40.19	■■■■■ 4.02
THRA-208	ENST00000578218	PLXNC1	O60486	1568 aa		40.18	■■■■■ 4.02
THRA-208	ENST00000578218	CERK	Q8TCT0	537 aa		40.14	■■■■■ 4.02
THRA-208	ENST00000578218	ADGB	Q8N7X0	1667 aa		40.13	■■■■■ 4.01
THRA-208	ENST00000578218	A2M	P01023	1474 aa		40.13	■■■■■ 4.01
THRA-208	ENST00000578218	CLTC	Q00610	1675 aa	Known RBP	40.12	■■■■■ 4.01
THRA-208	ENST00000578218	DMRT2	Q9Y5R5	561 aa		40.1	■■■■■ 4.01
THRA-208	ENST00000578218	NPAT	Q14207	1427 aa		40.04	■■■■■ 4
THRA-208	ENST00000578218	ZMYM3	Q14202	1370 aa		39.98	■■■■□ 3.99
THRA-208	ENST00000578218	MYO3A	Q8NEV4	1616 aa		39.98	■■■■□ 3.99
THRA-208	ENST00000578218	ZNF644	Q9H582	1327 aa	Predicted RBP	39.98	■■■■□ 3.99
THRA-208	ENST00000578218	PTPRT	O14522	1441 aa		39.98	■■■■□ 3.99
THRA-208	ENST00000578218	MBD5	Q9P267	1494 aa		39.97	■■■■□ 3.99
THRA-208	ENST00000578218	NCOA1	Q15788	1441 aa		39.96	■■■■□ 3.99
THRA-208	ENST00000578218	ZNF142	P52746	1687 aa	Predicted RBP	39.95	■■■■□ 3.99
THRA-208	ENST00000578218	CAMSAP1	Q5T5Y3	1602 aa		39.94	■■■■□ 3.99
THRA-208	ENST00000578218	NCOA2	Q15596	1464 aa		39.94	■■■■□ 3.98
THRA-208	ENST00000578218	GGT6	Q6P531	493 aa		39.91	■■■■□ 3.98
THRA-208	ENST00000578218	CAMSAP2	Q08AD1	1489 aa		39.91	■■■■□ 3.98
THRA-208	ENST00000578218	RTEL1-TNFRSF6B	F6WH68	1400 aa		39.9	■■■■□ 3.98
THRA-208	ENST00000578218	CCDC141	Q6ZP82	1450 aa		39.89	■■■■□ 3.98
THRA-208	ENST00000578218	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	39.85	■■■■□ 3.97
THRA-208	ENST00000578218	PTPRK	Q15262	1439 aa		39.83	■■■■□ 3.97
THRA-208	ENST00000578218	VPS8	Q8N3P4	1428 aa		39.78	■■■■□ 3.96
THRA-208	ENST00000578218	LTBP4	Q8N2S1	1624 aa		39.77	■■■■□ 3.96
THRA-208	ENST00000578218	DHX29	Q7Z478	1369 aa	Known RBP	39.77	■■■■□ 3.96
THRA-208	ENST00000578218	PPP6R1	Q9UPN7	881 aa		39.77	■■■■□ 3.96
THRA-208	ENST00000578218	ARHGEF5	Q12774	1597 aa		39.76	■■■■□ 3.95
THRA-208	ENST00000578218	PLA2R1	Q13018	1463 aa		39.74	■■■■□ 3.95
THRA-208	ENST00000578218	KDM5D	Q9BY66	1539 aa		39.72	■■■■□ 3.95
THRA-208	ENST00000578218	FAM135A	Q9P2D6	1515 aa		39.71	■■■■□ 3.95
THRA-208	ENST00000578218	LRRC9	Q6ZRR7	1453 aa		39.71	■■■■□ 3.95
THRA-208	ENST00000578218	RSPH4A	Q5TD94	716 aa		39.67	■■■■□ 3.94
THRA-208	ENST00000578218	IQSEC2	Q5JU85	1478 aa		39.67	■■■■□ 3.94
THRA-208	ENST00000578218	NCKAP5L	Q9HCH0	1330 aa		39.66	■■■■□ 3.94
THRA-208	ENST00000578218	KIF3B	O15066	747 aa		39.66	■■■■□ 3.94
THRA-208	ENST00000578218	A2ML1	A8K2U0	1454 aa		39.64	■■■■□ 3.94

Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms