RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-217ENST00000574022 NPM2Q86SE8 214 aaKnown RBP3.72□□□□□ -1.81
CHD3-217ENST00000574022 APBB1O00213 710 aa3.71□□□□□ -1.82
CHD3-217ENST00000574022 MAP3K13O43283 966 aa3.71□□□□□ -1.82
CHD3-217ENST00000574022 FAM117AQ9C073 453 aa3.71□□□□□ -1.82
CHD3-217ENST00000574022 ARID3CA6NKF2 412 aa3.7□□□□□ -1.82
CHD3-217ENST00000574022 PAK3O75914 559 aaPredicted RBP3.7□□□□□ -1.82
CHD3-217ENST00000574022 FLIIQ13045 1269 aa3.7□□□□□ -1.82
CHD3-217ENST00000574022 MS4A4AQ96JQ5 239 aa3.7□□□□□ -1.82
CHD3-217ENST00000574022 C1orf115Q9H7X2 142 aa3.7□□□□□ -1.82
CHD3-217ENST00000574022 SPDYE16A6NNV3 312 aaPredicted RBP3.69□□□□□ -1.82
CHD3-217ENST00000574022 PDIA4P13667 645 aaKnown RBP3.69□□□□□ -1.82
CHD3-217ENST00000574022 GOLGA2Q08379 1002 aa3.69□□□□□ -1.82
CHD3-217ENST00000574022 POTEDQ86YR6 584 aa3.69□□□□□ -1.82
CHD3-217ENST00000574022 KIF12Q96FN5 646 aa3.69□□□□□ -1.82
CHD3-217ENST00000574022 DDRGK1Q96HY6 314 aa3.69□□□□□ -1.82
CHD3-217ENST00000574022 MINK1Q8N4C8 1332 aaPredicted RBP3.69□□□□□ -1.82
CHD3-217ENST00000574022 PLEKHG3A1L390 1219 aa3.68□□□□□ -1.82
CHD3-217ENST00000574022 ZBTB7CA1YPR0 619 aa3.68□□□□□ -1.82
CHD3-217ENST00000574022 DPYSL4O14531 572 aa3.68□□□□□ -1.82
CHD3-217ENST00000574022 PPP1R15BQ5SWA1 713 aa3.68□□□□□ -1.82
CHD3-217ENST00000574022 GPHNQ9NQX3 736 aaPredicted RBP3.68□□□□□ -1.82
CHD3-217ENST00000574022 IRF6O14896 467 aa3.67□□□□□ -1.82
CHD3-217ENST00000574022 NUTM2FA1L443 756 aa3.66□□□□□ -1.82
CHD3-217ENST00000574022 PRKAR2AP13861 404 aaKnown RBP3.66□□□□□ -1.82
CHD3-217ENST00000574022 PDIA6Q15084 440 aa3.66□□□□□ -1.82
CHD3-217ENST00000574022 EMILIN3Q9NT22 766 aa3.66□□□□□ -1.82
CHD3-217ENST00000574022 A6NJR5 290 aa3.65□□□□□ -1.83
CHD3-217ENST00000574022 GPR37O15354 613 aa3.65□□□□□ -1.83
CHD3-217ENST00000574022 TRAK2O60296 914 aa3.65□□□□□ -1.83
CHD3-217ENST00000574022 MAP2K5Q13163 448 aa3.65□□□□□ -1.83
CHD3-217ENST00000574022 AMHR2Q16671 573 aa3.65□□□□□ -1.83
CHD3-217ENST00000574022 PARP9Q8IXQ6 854 aa3.65□□□□□ -1.83
CHD3-217ENST00000574022 CCDC102AQ96A19 550 aa3.65□□□□□ -1.83
CHD3-217ENST00000574022 GOPCQ9HD26 462 aa3.65□□□□□ -1.83
CHD3-217ENST00000574022 CCDC9Q9Y3X0 531 aaKnown RBP3.65□□□□□ -1.83
CHD3-217ENST00000574022 GRXCR2A6NFK2 248 aa3.64□□□□□ -1.83
CHD3-217ENST00000574022 DSG2Q14126 1118 aa3.64□□□□□ -1.83
CHD3-217ENST00000574022 CLUAP1Q96AJ1 413 aa3.64□□□□□ -1.83
CHD3-217ENST00000574022 PCMTD1Q96MG8 357 aaPredicted RBP3.64□□□□□ -1.83
CHD3-217ENST00000574022 TMEM106CQ9BVX2 250 aa3.64□□□□□ -1.83
CHD3-217ENST00000574022 GNPATO15228 680 aa3.63□□□□□ -1.83
CHD3-217ENST00000574022 ONECUT3O60422 494 aaPredicted RBP3.63□□□□□ -1.83
CHD3-217ENST00000574022 CCDC82Q8N4S0 544 aa3.63□□□□□ -1.83
CHD3-217ENST00000574022 FCHSD2O94868 740 aa3.62□□□□□ -1.83
CHD3-217ENST00000574022 MAP3K9P80192 1104 aa3.62□□□□□ -1.83
CHD3-217ENST00000574022 TTLL12Q14166 644 aaPredicted RBP3.62□□□□□ -1.83
CHD3-217ENST00000574022 HIC1Q14526 733 aa3.62□□□□□ -1.83
CHD3-217ENST00000574022 TMC2Q8TDI7 906 aa3.62□□□□□ -1.83
CHD3-217ENST00000574022 ZRANB1Q9UGI0 708 aa3.62□□□□□ -1.83
CHD3-217ENST00000574022 OSBPP22059 807 aa3.61□□□□□ -1.83
CHD3-217ENST00000574022 FOXK1P85037 733 aa3.61□□□□□ -1.83
CHD3-217ENST00000574022 NECTIN2Q92692 538 aa3.61□□□□□ -1.83
CHD3-217ENST00000574022 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP3.61□□□□□ -1.83
CHD3-217ENST00000574022 ZNF777Q9ULD5 760 aaPredicted RBP3.61□□□□□ -1.83
CHD3-217ENST00000574022 FECHP22830 423 aa3.6□□□□□ -1.83
CHD3-217ENST00000574022 FXR2P51116 673 aaKnown RBP eCLIP3.6□□□□□ -1.83
CHD3-217ENST00000574022 GIGYF2Q6Y7W6 1299 aaKnown RBP3.6□□□□□ -1.83
CHD3-217ENST00000574022 PLPP6Q8IY26 295 aa3.6□□□□□ -1.83
CHD3-217ENST00000574022 PHF12Q96QT6 1004 aa3.6□□□□□ -1.83
CHD3-217ENST00000574022 SERPINA10Q9UK55 444 aa3.6□□□□□ -1.83
CHD3-217ENST00000574022 RAD21O60216 631 aa3.59□□□□□ -1.83
CHD3-217ENST00000574022 MS4A1P11836 297 aa3.59□□□□□ -1.83
CHD3-217ENST00000574022 MCM6Q14566 821 aa3.59□□□□□ -1.83
CHD3-217ENST00000574022 ILDR1Q86SU0 546 aaPredicted RBP3.59□□□□□ -1.83
CHD3-217ENST00000574022 KCTD17Q8N5Z5 321 aa3.59□□□□□ -1.83
CHD3-217ENST00000574022 CCDC97Q96F63 343 aaPredicted RBP3.59□□□□□ -1.83
CHD3-217ENST00000574022 TRAIPQ9BWF2 469 aa3.59□□□□□ -1.83
CHD3-217ENST00000574022 ATP1B4Q9UN42 357 aaPredicted RBP3.59□□□□□ -1.83
CHD3-217ENST00000574022 PTGER2P43116 358 aa3.58□□□□□ -1.84
CHD3-217ENST00000574022 SKIV2LQ15477 1246 aaKnown RBP3.58□□□□□ -1.84
CHD3-217ENST00000574022 SH3D19Q5HYK7 790 aa3.58□□□□□ -1.84
CHD3-217ENST00000574022 DPY19L2Q6NUT2 758 aa3.58□□□□□ -1.84
CHD3-217ENST00000574022 PROSER2Q86WR7 435 aaPredicted RBP3.58□□□□□ -1.84
CHD3-217ENST00000574022 TRPC6Q9Y210 931 aa3.58□□□□□ -1.84
CHD3-217ENST00000574022 CD44P16070 742 aaKnown RBP3.57□□□□□ -1.84
CHD3-217ENST00000574022 CLCN1P35523 988 aa3.57□□□□□ -1.84
CHD3-217ENST00000574022 PTGDRQ13258 359 aa3.57□□□□□ -1.84
CHD3-217ENST00000574022 AEBP1Q8IUX7 1158 aa3.57□□□□□ -1.84
CHD3-217ENST00000574022 MICALL2Q8IY33 904 aa3.57□□□□□ -1.84
CHD3-217ENST00000574022 DDX12PQ92771 950 aa3.57□□□□□ -1.84
CHD3-217ENST00000574022 REPIN1Q9BWE0 567 aaKnown RBP3.57□□□□□ -1.84
CHD3-217ENST00000574022 C2orf72A6NCS6 295 aa3.56□□□□□ -1.84
CHD3-217ENST00000574022 TBC1D12O60347 775 aa3.56□□□□□ -1.84
CHD3-217ENST00000574022 FNBP4Q8N3X1 1017 aaPredicted RBP3.56□□□□□ -1.84
CHD3-217ENST00000574022 UPF1Q92900 1129 aaKnown RBP eCLIP3.56□□□□□ -1.84
CHD3-217ENST00000574022 POM121Q96HA1 1249 aa3.56□□□□□ -1.84
CHD3-217ENST00000574022 MS4A3Q96HJ5 214 aa3.56□□□□□ -1.84
CHD3-217ENST00000574022 TTLL13PA6NNM8 815 aa3.55□□□□□ -1.84
CHD3-217ENST00000574022 SSTR3P32745 418 aaPredicted RBP3.55□□□□□ -1.84
CHD3-217ENST00000574022 TIE1P35590 1138 aa3.55□□□□□ -1.84
CHD3-217ENST00000574022 PROCA1Q8NCQ7 364 aaPredicted RBP3.55□□□□□ -1.84
CHD3-217ENST00000574022 OXER1Q8TDS5 423 aa3.55□□□□□ -1.84
CHD3-217ENST00000574022 TMUB1Q9BVT8 246 aa3.55□□□□□ -1.84
CHD3-217ENST00000574022 GPCPD1Q9NPB8 672 aa3.55□□□□□ -1.84
CHD3-217ENST00000574022 POLR3EQ9NVU0 708 aa3.55□□□□□ -1.84
CHD3-217ENST00000574022 G3V3G9 751 aa3.54□□□□□ -1.84
CHD3-217ENST00000574022 KIF3CO14782 793 aa3.54□□□□□ -1.84
CHD3-217ENST00000574022 EVI5O60447 810 aa3.54□□□□□ -1.84
CHD3-217ENST00000574022 PRIM1P49642 420 aaKnown RBP3.54□□□□□ -1.84
CHD3-217ENST00000574022 MDM2Q00987 491 aaPredicted RBP3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms