RNA–Protein interactions for RNA: ENST00000566779.1

GTF3C1-206, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 3

Gene GTF3C1, Length 645 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-206ENST00000566779 KDM4FA0A1W2PPD8 638 aa16.36■□□□□ 0.21
GTF3C1-206ENST00000566779 RICTORQ6R327 1708 aa16.36■□□□□ 0.21
GTF3C1-206ENST00000566779 RAPGEF3O95398 923 aa16.34■□□□□ 0.21
GTF3C1-206ENST00000566779 CDK11AQ9UQ88 783 aaPredicted RBP16.33■□□□□ 0.2
GTF3C1-206ENST00000566779 CASKIN1Q8WXD9 1431 aa16.33■□□□□ 0.2
GTF3C1-206ENST00000566779 CCDC18Q5T9S5 1454 aa16.33■□□□□ 0.2
GTF3C1-206ENST00000566779 FYCO1Q9BQS8 1478 aa16.33■□□□□ 0.2
GTF3C1-206ENST00000566779 TROQ12816 1431 aaPredicted RBP16.32■□□□□ 0.2
GTF3C1-206ENST00000566779 RNF216Q9NWF9 866 aaPredicted RBP16.32■□□□□ 0.2
GTF3C1-206ENST00000566779 ARHGAP5Q13017 1502 aa16.31■□□□□ 0.2
GTF3C1-206ENST00000566779 AKNAQ7Z591 1439 aa16.31■□□□□ 0.2
GTF3C1-206ENST00000566779 PHLDB1Q86UU1 1377 aa16.31■□□□□ 0.2
GTF3C1-206ENST00000566779 DENND4BO75064 1496 aaPredicted RBP16.3■□□□□ 0.2
GTF3C1-206ENST00000566779 ARHGEF40Q8TER5 1519 aa16.29■□□□□ 0.2
GTF3C1-206ENST00000566779 CEP162Q5TB80 1403 aa16.29■□□□□ 0.2
GTF3C1-206ENST00000566779 CDC42BPBQ9Y5S2 1711 aa16.29■□□□□ 0.2
GTF3C1-206ENST00000566779 CDC42BPAQ5VT25 1732 aa16.28■□□□□ 0.2
GTF3C1-206ENST00000566779 PREX2Q70Z35 1606 aa16.27■□□□□ 0.2
GTF3C1-206ENST00000566779 ARID4BQ4LE39 1312 aaPredicted RBP16.25■□□□□ 0.19
GTF3C1-206ENST00000566779 PLCH2O75038 1416 aa16.25■□□□□ 0.19
GTF3C1-206ENST00000566779 ZFYVE16Q7Z3T8 1539 aa16.24■□□□□ 0.19
GTF3C1-206ENST00000566779 SCAPERQ9BY12 1400 aa16.23■□□□□ 0.19
GTF3C1-206ENST00000566779 POGZQ7Z3K3 1410 aa16.22■□□□□ 0.19
GTF3C1-206ENST00000566779 ZMYM4Q5VZL5 1548 aa16.22■□□□□ 0.19
GTF3C1-206ENST00000566779 BCORL1Q5H9F3 1711 aa16.22■□□□□ 0.19
GTF3C1-206ENST00000566779 ITSN2Q9NZM3 1697 aa16.21■□□□□ 0.19
GTF3C1-206ENST00000566779 LOC105371045A0A1W2PR82 267 aa16.21■□□□□ 0.19
GTF3C1-206ENST00000566779 EFCAB2Q5VUJ9 269 aa16.21■□□□□ 0.19
GTF3C1-206ENST00000566779 FOXD4L1Q9NU39 408 aa16.21■□□□□ 0.19
GTF3C1-206ENST00000566779 RIMS1Q86UR5 1692 aaKnown RBP16.21■□□□□ 0.18
GTF3C1-206ENST00000566779 MADDQ8WXG6 1647 aa16.2■□□□□ 0.18
GTF3C1-206ENST00000566779 SIGLEC1Q9BZZ2 1709 aa16.2■□□□□ 0.18
GTF3C1-206ENST00000566779 MYT1LQ9UL68 1186 aa16.2■□□□□ 0.18
GTF3C1-206ENST00000566779 YEATS2Q9ULM3 1422 aa16.19■□□□□ 0.18
GTF3C1-206ENST00000566779 ADAMTSL3P82987 1691 aa16.18■□□□□ 0.18
GTF3C1-206ENST00000566779 MTUS2Q5JR59 1369 aa16.17■□□□□ 0.18
GTF3C1-206ENST00000566779 HECW2Q9P2P5 1572 aa16.17■□□□□ 0.18
GTF3C1-206ENST00000566779 FER1L4A9Z1Z3 1794 aa16.16■□□□□ 0.18
GTF3C1-206ENST00000566779 ABCC1P33527 1531 aa16.16■□□□□ 0.18
GTF3C1-206ENST00000566779 ZNF777Q9ULD5 760 aaPredicted RBP16.16■□□□□ 0.18
GTF3C1-206ENST00000566779 EHBP1L1Q8N3D4 1523 aa16.15■□□□□ 0.18
GTF3C1-206ENST00000566779 DMRT2Q9Y5R5 561 aa16.15■□□□□ 0.18
GTF3C1-206ENST00000566779 ZNF518AQ6AHZ1 1483 aa16.14■□□□□ 0.17
GTF3C1-206ENST00000566779 SAMD9LQ8IVG5 1584 aa16.13■□□□□ 0.17
GTF3C1-206ENST00000566779 MLECQ14165 292 aa16.13■□□□□ 0.17
GTF3C1-206ENST00000566779 SYCP2Q9BX26 1530 aa16.13■□□□□ 0.17
GTF3C1-206ENST00000566779 ABCA6Q8N139 1617 aa16.12■□□□□ 0.17
GTF3C1-206ENST00000566779 KDM5CP41229 1560 aa16.12■□□□□ 0.17
GTF3C1-206ENST00000566779 SUPT6HQ7KZ85 1726 aaKnown RBP16.11■□□□□ 0.17
GTF3C1-206ENST00000566779 MAGI2Q86UL8 1455 aa16.11■□□□□ 0.17
GTF3C1-206ENST00000566779 TIAM1Q13009 1591 aa16.11■□□□□ 0.17
GTF3C1-206ENST00000566779 CCNB3Q8WWL7 1395 aa16.11■□□□□ 0.17
GTF3C1-206ENST00000566779 DIP2CQ9Y2E4 1556 aa16.1■□□□□ 0.17
GTF3C1-206ENST00000566779 AFAP1Q8N556 730 aa16.1■□□□□ 0.17
GTF3C1-206ENST00000566779 PTPRMP28827 1452 aa16.1■□□□□ 0.17
GTF3C1-206ENST00000566779 ARHGEF12Q9NZN5 1544 aa16.09■□□□□ 0.17
GTF3C1-206ENST00000566779 HOXD11P31277 338 aaPredicted RBP16.09■□□□□ 0.17
GTF3C1-206ENST00000566779 C9orf84Q5VXU9 1444 aa16.09■□□□□ 0.17
GTF3C1-206ENST00000566779 GPATCH8Q9UKJ3 1502 aaKnown RBP16.09■□□□□ 0.17
GTF3C1-206ENST00000566779 VPS8Q8N3P4 1428 aa16.08■□□□□ 0.16
GTF3C1-206ENST00000566779 TRAPPC8Q9Y2L5 1435 aa16.08■□□□□ 0.16
GTF3C1-206ENST00000566779 ATP10AO60312 1499 aa16.07■□□□□ 0.16
GTF3C1-206ENST00000566779 KIDINS220Q9ULH0 1771 aa16.07■□□□□ 0.16
GTF3C1-206ENST00000566779 CFDP1Q9UEE9 299 aaPredicted RBP16.05■□□□□ 0.16
GTF3C1-206ENST00000566779 NCOA2Q15596 1464 aa16.02■□□□□ 0.15
GTF3C1-206ENST00000566779 HNRNPMP52272 730 aaKnown RBP eCLIP16.01■□□□□ 0.15
GTF3C1-206ENST00000566779 ATP7AQ04656 1500 aa16■□□□□ 0.15
GTF3C1-206ENST00000566779 PLEKHH2Q8IVE3 1493 aa16■□□□□ 0.15
GTF3C1-206ENST00000566779 MLH3Q9UHC1 1453 aa16■□□□□ 0.15
GTF3C1-206ENST00000566779 INO80Q9ULG1 1556 aaPredicted RBP16■□□□□ 0.15
GTF3C1-206ENST00000566779 SPAG9O60271 1321 aaKnown RBP15.97■□□□□ 0.15
GTF3C1-206ENST00000566779 ZNF644Q9H582 1327 aaPredicted RBP15.97■□□□□ 0.15
GTF3C1-206ENST00000566779 REREQ9P2R6 1566 aa15.97■□□□□ 0.15
GTF3C1-206ENST00000566779 CAMSAP2Q08AD1 1489 aa15.97■□□□□ 0.15
GTF3C1-206ENST00000566779 LRRC9Q6ZRR7 1453 aa15.97■□□□□ 0.15
GTF3C1-206ENST00000566779 ADGBQ8N7X0 1667 aa15.96■□□□□ 0.15
GTF3C1-206ENST00000566779 C3P01024 1663 aa15.94■□□□□ 0.14
GTF3C1-206ENST00000566779 PREX1Q8TCU6 1659 aa15.93■□□□□ 0.14
GTF3C1-206ENST00000566779 APLP2Q06481 763 aa15.93■□□□□ 0.14
GTF3C1-206ENST00000566779 KIAA1107Q9UPP5 1409 aa15.93■□□□□ 0.14
GTF3C1-206ENST00000566779 ESF1Q9H501 851 aaKnown RBP15.92■□□□□ 0.14
GTF3C1-206ENST00000566779 CLTCQ00610 1675 aaKnown RBP15.92■□□□□ 0.14
GTF3C1-206ENST00000566779 LMTK3Q96Q04 1460 aa15.91■□□□□ 0.14
GTF3C1-206ENST00000566779 AGLP35573 1532 aa15.91■□□□□ 0.14
GTF3C1-206ENST00000566779 CEBPAP49715 358 aaPredicted RBP15.9■□□□□ 0.14
GTF3C1-206ENST00000566779 KANK4Q5T7N3 995 aaPredicted RBP15.9■□□□□ 0.14
GTF3C1-206ENST00000566779 CCDC141Q6ZP82 1450 aa15.9■□□□□ 0.14
GTF3C1-206ENST00000566779 A2MP01023 1474 aa15.89■□□□□ 0.13
GTF3C1-206ENST00000566779 MAP3K1Q13233 1512 aa15.89■□□□□ 0.13
GTF3C1-206ENST00000566779 PLXNC1O60486 1568 aa15.88■□□□□ 0.13
GTF3C1-206ENST00000566779 MBD5Q9P267 1494 aa15.87■□□□□ 0.13
GTF3C1-206ENST00000566779 HSPA2P54652 639 aa15.87■□□□□ 0.13
GTF3C1-206ENST00000566779 SLC4A2P04920 1241 aa15.86■□□□□ 0.13
GTF3C1-206ENST00000566779 MROH2AA6NES4 1674 aa15.86■□□□□ 0.13
GTF3C1-206ENST00000566779 ARHGEF5Q12774 1597 aa15.85■□□□□ 0.13
GTF3C1-206ENST00000566779 MYOM3Q5VTT5 1437 aa15.85■□□□□ 0.13
GTF3C1-206ENST00000566779 CROCC2H7BZ55 1655 aa15.83■□□□□ 0.13
GTF3C1-206ENST00000566779 SETD1BQ9UPS6 1966 aaKnown RBP15.83■□□□□ 0.12
GTF3C1-206ENST00000566779 PTPN23Q9H3S7 1636 aa15.83■□□□□ 0.12
GTF3C1-206ENST00000566779 GGT6Q6P531 493 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms