RNA–Protein interactions for RNA: ENST00000566723.1

SMPD3-208, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 4

Gene SMPD3, Length 524 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-208ENST00000566723 POGZQ7Z3K3 1410 aa24.84■■□□□ 1.57
SMPD3-208ENST00000566723 MADDQ8WXG6 1647 aa24.83■■□□□ 1.57
SMPD3-208ENST00000566723 MAGI2Q86UL8 1455 aa24.82■■□□□ 1.56
SMPD3-208ENST00000566723 SCAPERQ9BY12 1400 aa24.81■■□□□ 1.56
SMPD3-208ENST00000566723 PTPRMP28827 1452 aa24.81■■□□□ 1.56
SMPD3-208ENST00000566723 FYCO1Q9BQS8 1478 aa24.8■■□□□ 1.56
SMPD3-208ENST00000566723 SIGLEC1Q9BZZ2 1709 aa24.79■■□□□ 1.56
SMPD3-208ENST00000566723 ARID4BQ4LE39 1312 aaPredicted RBP24.79■■□□□ 1.56
SMPD3-208ENST00000566723 YEATS2Q9ULM3 1422 aa24.78■■□□□ 1.56
SMPD3-208ENST00000566723 ARHGAP5Q13017 1502 aa24.78■■□□□ 1.56
SMPD3-208ENST00000566723 CDC42BPBQ9Y5S2 1711 aa24.78■■□□□ 1.56
SMPD3-208ENST00000566723 PREX2Q70Z35 1606 aa24.76■■□□□ 1.55
SMPD3-208ENST00000566723 RIMS1Q86UR5 1692 aaKnown RBP24.76■■□□□ 1.55
SMPD3-208ENST00000566723 EFCAB2Q5VUJ9 269 aa24.76■■□□□ 1.55
SMPD3-208ENST00000566723 KDM5CP41229 1560 aa24.71■■□□□ 1.55
SMPD3-208ENST00000566723 ZNF518AQ6AHZ1 1483 aa24.71■■□□□ 1.55
SMPD3-208ENST00000566723 CDC42BPAQ5VT25 1732 aa24.7■■□□□ 1.54
SMPD3-208ENST00000566723 FER1L4A9Z1Z3 1794 aa24.68■■□□□ 1.54
SMPD3-208ENST00000566723 ABCC1P33527 1531 aa24.66■■□□□ 1.54
SMPD3-208ENST00000566723 C9orf84Q5VXU9 1444 aa24.66■■□□□ 1.54
SMPD3-208ENST00000566723 ITSN2Q9NZM3 1697 aa24.66■■□□□ 1.54
SMPD3-208ENST00000566723 ATP10AO60312 1499 aa24.65■■□□□ 1.54
SMPD3-208ENST00000566723 DIP2CQ9Y2E4 1556 aa24.61■■□□□ 1.53
SMPD3-208ENST00000566723 ABCA6Q8N139 1617 aa24.59■■□□□ 1.53
SMPD3-208ENST00000566723 ARHGEF12Q9NZN5 1544 aa24.59■■□□□ 1.53
SMPD3-208ENST00000566723 AFAP1Q8N556 730 aa24.58■■□□□ 1.53
SMPD3-208ENST00000566723 REREQ9P2R6 1566 aa24.58■■□□□ 1.52
SMPD3-208ENST00000566723 LMTK3Q96Q04 1460 aa24.58■■□□□ 1.52
SMPD3-208ENST00000566723 MLH3Q9UHC1 1453 aa24.57■■□□□ 1.52
SMPD3-208ENST00000566723 TRAPPC8Q9Y2L5 1435 aa24.55■■□□□ 1.52
SMPD3-208ENST00000566723 MLECQ14165 292 aa24.55■■□□□ 1.52
SMPD3-208ENST00000566723 SAMD9LQ8IVG5 1584 aa24.54■■□□□ 1.52
SMPD3-208ENST00000566723 CEP162Q5TB80 1403 aa24.53■■□□□ 1.52
SMPD3-208ENST00000566723 KIDINS220Q9ULH0 1771 aa24.53■■□□□ 1.52
SMPD3-208ENST00000566723 GPATCH8Q9UKJ3 1502 aaKnown RBP24.52■■□□□ 1.52
SMPD3-208ENST00000566723 SYCP2Q9BX26 1530 aa24.51■■□□□ 1.51
SMPD3-208ENST00000566723 MYT1LQ9UL68 1186 aa24.49■■□□□ 1.51
SMPD3-208ENST00000566723 MTUS2Q5JR59 1369 aa24.49■■□□□ 1.51
SMPD3-208ENST00000566723 EHBP1L1Q8N3D4 1523 aa24.48■■□□□ 1.51
SMPD3-208ENST00000566723 AGLP35573 1532 aa24.46■■□□□ 1.51
SMPD3-208ENST00000566723 PLPPR3Q6T4P5 718 aa24.46■■□□□ 1.51
SMPD3-208ENST00000566723 CCNB3Q8WWL7 1395 aa24.44■■□□□ 1.5
SMPD3-208ENST00000566723 PREX1Q8TCU6 1659 aa24.44■■□□□ 1.5
SMPD3-208ENST00000566723 ILDR1Q86SU0 546 aaPredicted RBP24.44■■□□□ 1.5
SMPD3-208ENST00000566723 TIAM1Q13009 1591 aa24.44■■□□□ 1.5
SMPD3-208ENST00000566723 PLEKHH2Q8IVE3 1493 aa24.44■■□□□ 1.5
SMPD3-208ENST00000566723 ZNF777Q9ULD5 760 aaPredicted RBP24.43■■□□□ 1.5
SMPD3-208ENST00000566723 KIAA1107Q9UPP5 1409 aa24.41■■□□□ 1.5
SMPD3-208ENST00000566723 INO80Q9ULG1 1556 aaPredicted RBP24.4■■□□□ 1.5
SMPD3-208ENST00000566723 CFDP1Q9UEE9 299 aaPredicted RBP24.39■■□□□ 1.49
SMPD3-208ENST00000566723 ATP7AQ04656 1500 aa24.39■■□□□ 1.49
SMPD3-208ENST00000566723 C3P01024 1663 aa24.38■■□□□ 1.49
SMPD3-208ENST00000566723 SETD1BQ9UPS6 1966 aaKnown RBP24.38■■□□□ 1.49
SMPD3-208ENST00000566723 SUPT6HQ7KZ85 1726 aaKnown RBP24.35■■□□□ 1.49
SMPD3-208ENST00000566723 HNRNPMP52272 730 aaKnown RBP eCLIP24.35■■□□□ 1.49
SMPD3-208ENST00000566723 HSPA2P54652 639 aa24.35■■□□□ 1.49
SMPD3-208ENST00000566723 SPAG9O60271 1321 aaKnown RBP24.35■■□□□ 1.49
SMPD3-208ENST00000566723 PLXNC1O60486 1568 aa24.33■■□□□ 1.49
SMPD3-208ENST00000566723 CEBPAP49715 358 aaPredicted RBP24.32■■□□□ 1.48
SMPD3-208ENST00000566723 MROH2AA6NES4 1674 aa24.3■■□□□ 1.48
SMPD3-208ENST00000566723 ADGBQ8N7X0 1667 aa24.3■■□□□ 1.48
SMPD3-208ENST00000566723 CNTLNQ9NXG0 1405 aa24.29■■□□□ 1.48
SMPD3-208ENST00000566723 VPS8Q8N3P4 1428 aa24.28■■□□□ 1.48
SMPD3-208ENST00000566723 NCOA2Q15596 1464 aa24.28■■□□□ 1.48
SMPD3-208ENST00000566723 UHRF1BP1Q6BDS2 1440 aa24.27■■□□□ 1.48
SMPD3-208ENST00000566723 A2MP01023 1474 aa24.26■■□□□ 1.47
SMPD3-208ENST00000566723 MBD5Q9P267 1494 aa24.26■■□□□ 1.47
SMPD3-208ENST00000566723 ESF1Q9H501 851 aaKnown RBP24.26■■□□□ 1.47
SMPD3-208ENST00000566723 ZNF644Q9H582 1327 aaPredicted RBP24.25■■□□□ 1.47
SMPD3-208ENST00000566723 LOC105371045A0A1W2PR82 267 aa24.24■■□□□ 1.47
SMPD3-208ENST00000566723 STRCQ7RTU9 1775 aa24.22■■□□□ 1.47
SMPD3-208ENST00000566723 CAMSAP2Q08AD1 1489 aa24.22■■□□□ 1.47
SMPD3-208ENST00000566723 CLTCQ00610 1675 aaKnown RBP24.21■■□□□ 1.47
SMPD3-208ENST00000566723 CCDC141Q6ZP82 1450 aa24.19■■□□□ 1.46
SMPD3-208ENST00000566723 LRRC9Q6ZRR7 1453 aa24.19■■□□□ 1.46
SMPD3-208ENST00000566723 RTEL1-TNFRSF6BF6WH68 1400 aa24.19■■□□□ 1.46
SMPD3-208ENST00000566723 FBXO41Q8TF61 875 aa24.18■■□□□ 1.46
SMPD3-208ENST00000566723 MAP3K1Q13233 1512 aa24.16■■□□□ 1.46
SMPD3-208ENST00000566723 NPATQ14207 1427 aa24.16■■□□□ 1.46
SMPD3-208ENST00000566723 ARHGEF5Q12774 1597 aa24.15■■□□□ 1.46
SMPD3-208ENST00000566723 ZMYM3Q14202 1370 aa24.13■■□□□ 1.45
SMPD3-208ENST00000566723 ZNF142P52746 1687 aaPredicted RBP24.1■■□□□ 1.45
SMPD3-208ENST00000566723 MYO3AQ8NEV4 1616 aa24.1■■□□□ 1.45
SMPD3-208ENST00000566723 DHX29Q7Z478 1369 aaKnown RBP24.09■■□□□ 1.45
SMPD3-208ENST00000566723 RSPH4AQ5TD94 716 aa24.08■■□□□ 1.45
SMPD3-208ENST00000566723 GGT6Q6P531 493 aa24.08■■□□□ 1.45
SMPD3-208ENST00000566723 PPP6R1Q9UPN7 881 aa24.06■■□□□ 1.44
SMPD3-208ENST00000566723 FAM135AQ9P2D6 1515 aa24.05■■□□□ 1.44
SMPD3-208ENST00000566723 PTPRKQ15262 1439 aa24.05■■□□□ 1.44
SMPD3-208ENST00000566723 DMRT2Q9Y5R5 561 aa24.05■■□□□ 1.44
SMPD3-208ENST00000566723 MAST1Q9Y2H9 1570 aa24.04■■□□□ 1.44
SMPD3-208ENST00000566723 NCOA1Q15788 1441 aa24.04■■□□□ 1.44
SMPD3-208ENST00000566723 PTPRTO14522 1441 aa24.03■■□□□ 1.44
SMPD3-208ENST00000566723 MYOM3Q5VTT5 1437 aa24.03■■□□□ 1.44
SMPD3-208ENST00000566723 KANK4Q5T7N3 995 aaPredicted RBP24.03■■□□□ 1.44
SMPD3-208ENST00000566723 CAMSAP1Q5T5Y3 1602 aa24.02■■□□□ 1.44
SMPD3-208ENST00000566723 KDM5DQ9BY66 1539 aa24.02■■□□□ 1.44
SMPD3-208ENST00000566723 CEP170BQ9Y4F5 1589 aaPredicted RBP24.02■■□□□ 1.44
SMPD3-208ENST00000566723 MIA2Q96PC5 1412 aa24.01■■□□□ 1.43
SMPD3-208ENST00000566723 CERKQ8TCT0 537 aa24■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms