RNA–Protein interactions for RNA: ENST00000565517.5

COMMD4-212, Transcript of COMM domain containing 4, humanhuman

TSL 4

Gene COMMD4, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-212ENST00000565517 ARHGAP5Q13017 1502 aa24.5■■□□□ 1.51
COMMD4-212ENST00000565517 ADGRL1O94910 1474 aa24.49■■□□□ 1.51
COMMD4-212ENST00000565517 EHBP1L1Q8N3D4 1523 aa24.47■■□□□ 1.51
COMMD4-212ENST00000565517 SCAPERQ9BY12 1400 aa24.46■■□□□ 1.51
COMMD4-212ENST00000565517 TIAM1Q13009 1591 aa24.45■■□□□ 1.5
COMMD4-212ENST00000565517 MAP3K1Q13233 1512 aa24.43■■□□□ 1.5
COMMD4-212ENST00000565517 ZMYM4Q5VZL5 1548 aa24.42■■□□□ 1.5
COMMD4-212ENST00000565517 GPATCH8Q9UKJ3 1502 aaKnown RBP24.42■■□□□ 1.5
COMMD4-212ENST00000565517 POGZQ7Z3K3 1410 aa24.41■■□□□ 1.5
COMMD4-212ENST00000565517 KDM4FA0A1W2PPD8 638 aa24.4■■□□□ 1.5
COMMD4-212ENST00000565517 AEBP2Q6ZN18 517 aaPredicted RBP24.4■■□□□ 1.5
COMMD4-212ENST00000565517 MAGI2Q86UL8 1455 aa24.39■■□□□ 1.5
COMMD4-212ENST00000565517 CCNB3Q8WWL7 1395 aa24.39■■□□□ 1.49
COMMD4-212ENST00000565517 SUPT6HQ7KZ85 1726 aaKnown RBP24.37■■□□□ 1.49
COMMD4-212ENST00000565517 ZNF518AQ6AHZ1 1483 aa24.36■■□□□ 1.49
COMMD4-212ENST00000565517 ABCC1P33527 1531 aa24.35■■□□□ 1.49
COMMD4-212ENST00000565517 LRRC9Q6ZRR7 1453 aa24.35■■□□□ 1.49
COMMD4-212ENST00000565517 ARHGEF40Q8TER5 1519 aa24.35■■□□□ 1.49
COMMD4-212ENST00000565517 ITSN2Q9NZM3 1697 aa24.34■■□□□ 1.49
COMMD4-212ENST00000565517 CFDP1Q9UEE9 299 aaPredicted RBP24.33■■□□□ 1.49
COMMD4-212ENST00000565517 KDM5CP41229 1560 aa24.33■■□□□ 1.48
COMMD4-212ENST00000565517 ZFYVE16Q7Z3T8 1539 aa24.32■■□□□ 1.48
COMMD4-212ENST00000565517 SAMD9LQ8IVG5 1584 aa24.32■■□□□ 1.48
COMMD4-212ENST00000565517 NCOA2Q15596 1464 aa24.31■■□□□ 1.48
COMMD4-212ENST00000565517 ARHGEF12Q9NZN5 1544 aa24.3■■□□□ 1.48
COMMD4-212ENST00000565517 AFAP1Q8N556 730 aa24.3■■□□□ 1.48
COMMD4-212ENST00000565517 ZNF777Q9ULD5 760 aaPredicted RBP24.29■■□□□ 1.48
COMMD4-212ENST00000565517 PLEKHH2Q8IVE3 1493 aa24.29■■□□□ 1.48
COMMD4-212ENST00000565517 YEATS2Q9ULM3 1422 aa24.28■■□□□ 1.48
COMMD4-212ENST00000565517 KIAA1107Q9UPP5 1409 aa24.28■■□□□ 1.48
COMMD4-212ENST00000565517 APLP2Q06481 763 aa24.28■■□□□ 1.48
COMMD4-212ENST00000565517 TRAPPC8Q9Y2L5 1435 aa24.27■■□□□ 1.48
COMMD4-212ENST00000565517 KANK4Q5T7N3 995 aaPredicted RBP24.26■■□□□ 1.47
COMMD4-212ENST00000565517 HECW2Q9P2P5 1572 aa24.25■■□□□ 1.47
COMMD4-212ENST00000565517 MLH3Q9UHC1 1453 aa24.25■■□□□ 1.47
COMMD4-212ENST00000565517 SYCP2Q9BX26 1530 aa24.24■■□□□ 1.47
COMMD4-212ENST00000565517 ATP10AO60312 1499 aa24.23■■□□□ 1.47
COMMD4-212ENST00000565517 HNRNPMP52272 730 aaKnown RBP eCLIP24.21■■□□□ 1.47
COMMD4-212ENST00000565517 BCORL1Q5H9F3 1711 aa24.21■■□□□ 1.47
COMMD4-212ENST00000565517 ARID4BQ4LE39 1312 aaPredicted RBP24.2■■□□□ 1.46
COMMD4-212ENST00000565517 ADAMTSL3P82987 1691 aa24.19■■□□□ 1.46
COMMD4-212ENST00000565517 KIDINS220Q9ULH0 1771 aa24.19■■□□□ 1.46
COMMD4-212ENST00000565517 C9orf84Q5VXU9 1444 aa24.18■■□□□ 1.46
COMMD4-212ENST00000565517 MYT1LQ9UL68 1186 aa24.18■■□□□ 1.46
COMMD4-212ENST00000565517 ZNF644Q9H582 1327 aaPredicted RBP24.17■■□□□ 1.46
COMMD4-212ENST00000565517 SIGLEC1Q9BZZ2 1709 aa24.17■■□□□ 1.46
COMMD4-212ENST00000565517 DIP2CQ9Y2E4 1556 aa24.16■■□□□ 1.46
COMMD4-212ENST00000565517 REREQ9P2R6 1566 aa24.16■■□□□ 1.46
COMMD4-212ENST00000565517 MBD5Q9P267 1494 aa24.15■■□□□ 1.46
COMMD4-212ENST00000565517 ABCA6Q8N139 1617 aa24.14■■□□□ 1.46
COMMD4-212ENST00000565517 SPAG9O60271 1321 aaKnown RBP24.13■■□□□ 1.45
COMMD4-212ENST00000565517 RSPH4AQ5TD94 716 aa24.13■■□□□ 1.45
COMMD4-212ENST00000565517 CAMSAP2Q08AD1 1489 aa24.13■■□□□ 1.45
COMMD4-212ENST00000565517 MYOM3Q5VTT5 1437 aa24.11■■□□□ 1.45
COMMD4-212ENST00000565517 MIA2Q96PC5 1412 aa24.11■■□□□ 1.45
COMMD4-212ENST00000565517 INO80Q9ULG1 1556 aaPredicted RBP24.1■■□□□ 1.45
COMMD4-212ENST00000565517 ATP7AQ04656 1500 aa24.1■■□□□ 1.45
COMMD4-212ENST00000565517 MADDQ8WXG6 1647 aa24.07■■□□□ 1.44
COMMD4-212ENST00000565517 RTEL1-TNFRSF6BF6WH68 1400 aa24.07■■□□□ 1.44
COMMD4-212ENST00000565517 ARHGEF5Q12774 1597 aa24.07■■□□□ 1.44
COMMD4-212ENST00000565517 AGLP35573 1532 aa24.06■■□□□ 1.44
COMMD4-212ENST00000565517 CCDC141Q6ZP82 1450 aa24.06■■□□□ 1.44
COMMD4-212ENST00000565517 PTPRMP28827 1452 aa24.03■■□□□ 1.44
COMMD4-212ENST00000565517 ADGBQ8N7X0 1667 aa24.02■■□□□ 1.44
COMMD4-212ENST00000565517 FER1L4A9Z1Z3 1794 aa24.01■■□□□ 1.43
COMMD4-212ENST00000565517 MLECQ14165 292 aa24.01■■□□□ 1.43
COMMD4-212ENST00000565517 RIMS1Q86UR5 1692 aaKnown RBP24.01■■□□□ 1.43
COMMD4-212ENST00000565517 TSPY4P0CV99 314 aa23.98■■□□□ 1.43
COMMD4-212ENST00000565517 TSPY10P0CW01 314 aa23.98■■□□□ 1.43
COMMD4-212ENST00000565517 A2MP01023 1474 aa23.98■■□□□ 1.43
COMMD4-212ENST00000565517 PTPN23Q9H3S7 1636 aa23.98■■□□□ 1.43
COMMD4-212ENST00000565517 PLXNC1O60486 1568 aa23.97■■□□□ 1.43
COMMD4-212ENST00000565517 FGD6Q6ZV73 1430 aa23.96■■□□□ 1.43
COMMD4-212ENST00000565517 MAST1Q9Y2H9 1570 aa23.95■■□□□ 1.42
COMMD4-212ENST00000565517 TCOF1Q13428 1488 aaKnown RBP23.94■■□□□ 1.42
COMMD4-212ENST00000565517 DHX29Q7Z478 1369 aaKnown RBP23.91■■□□□ 1.42
COMMD4-212ENST00000565517 CROCC2H7BZ55 1655 aa23.86■■□□□ 1.41
COMMD4-212ENST00000565517 DNMT1P26358 1616 aaKnown RBP23.86■■□□□ 1.41
COMMD4-212ENST00000565517 SHANK2Q9UPX8 1470 aa23.86■■□□□ 1.41
COMMD4-212ENST00000565517 ABCC5O15440 1437 aa23.85■■□□□ 1.41
COMMD4-212ENST00000565517 CNTLNQ9NXG0 1405 aa23.85■■□□□ 1.41
COMMD4-212ENST00000565517 ESF1Q9H501 851 aaKnown RBP23.85■■□□□ 1.41
COMMD4-212ENST00000565517 PPP6R1Q9UPN7 881 aa23.85■■□□□ 1.41
COMMD4-212ENST00000565517 DAPK1P53355 1430 aa23.83■■□□□ 1.4
COMMD4-212ENST00000565517 SETD1BQ9UPS6 1966 aaKnown RBP23.82■■□□□ 1.4
COMMD4-212ENST00000565517 MROH2AA6NES4 1674 aa23.81■■□□□ 1.4
COMMD4-212ENST00000565517 GGT6Q6P531 493 aa23.8■■□□□ 1.4
COMMD4-212ENST00000565517 C3P01024 1663 aa23.79■■□□□ 1.4
COMMD4-212ENST00000565517 KIF3BO15066 747 aa23.78■■□□□ 1.4
COMMD4-212ENST00000565517 CEBPAP49715 358 aaPredicted RBP23.77■■□□□ 1.4
COMMD4-212ENST00000565517 PLPPR3Q6T4P5 718 aa23.77■■□□□ 1.4
COMMD4-212ENST00000565517 DUOX2Q9NRD8 1548 aa23.76■■□□□ 1.39
COMMD4-212ENST00000565517 FAM50AQ14320 339 aaKnown RBP23.76■■□□□ 1.39
COMMD4-212ENST00000565517 EIF2AK4Q9P2K8 1649 aaKnown RBP23.76■■□□□ 1.39
COMMD4-212ENST00000565517 CLTCQ00610 1675 aaKnown RBP23.76■■□□□ 1.39
COMMD4-212ENST00000565517 PPARGC1BQ86YN6 1023 aaKnown RBP23.75■■□□□ 1.39
COMMD4-212ENST00000565517 FAM135AQ9P2D6 1515 aa23.74■■□□□ 1.39
COMMD4-212ENST00000565517 ZMYM3Q14202 1370 aa23.73■■□□□ 1.39
COMMD4-212ENST00000565517 ANKRD30AQ9BXX3 1397 aa23.72■■□□□ 1.39
COMMD4-212ENST00000565517 KIF15Q9NS87 1388 aa23.72■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 97.2 ms