RNA–Protein interactions for RNA: ENST00000565038.1

PALB2-203, Transcript of partner and localizer of BRCA2, humanhuman

TSL 3

Gene PALB2, Length 344 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PALB2-203ENST00000565038 MAMSTRQ6ZN01 415 aa10.91□□□□□ -0.66
PALB2-203ENST00000565038 OTUD5Q96G74 571 aa10.9□□□□□ -0.66
PALB2-203ENST00000565038 NCKAP5LQ9HCH0 1330 aa10.89□□□□□ -0.67
PALB2-203ENST00000565038 C2orf72A6NCS6 295 aa10.87□□□□□ -0.67
PALB2-203ENST00000565038 SLAIN1Q8ND83 568 aa10.87□□□□□ -0.67
PALB2-203ENST00000565038 TMC2Q8TDI7 906 aa10.87□□□□□ -0.67
PALB2-203ENST00000565038 SLC24A1O60721 1099 aa10.86□□□□□ -0.67
PALB2-203ENST00000565038 PDE4AP27815 886 aa10.86□□□□□ -0.67
PALB2-203ENST00000565038 LARP6Q9BRS8 491 aaKnown RBP10.86□□□□□ -0.67
PALB2-203ENST00000565038 CRISPLD2Q9H0B8 497 aa10.86□□□□□ -0.67
PALB2-203ENST00000565038 GPHNQ9NQX3 736 aaPredicted RBP10.85□□□□□ -0.67
PALB2-203ENST00000565038 KDM2AQ9Y2K7 1162 aa10.84□□□□□ -0.67
PALB2-203ENST00000565038 KIF3CO14782 793 aa10.83□□□□□ -0.68
PALB2-203ENST00000565038 DSG2Q14126 1118 aa10.81□□□□□ -0.68
PALB2-203ENST00000565038 VSIG10Q8N0Z9 540 aa10.8□□□□□ -0.68
PALB2-203ENST00000565038 DDX27Q96GQ7 796 aaKnown RBP10.8□□□□□ -0.68
PALB2-203ENST00000565038 MFSD10Q14728 455 aa10.78□□□□□ -0.68
PALB2-203ENST00000565038 PPP1R15BQ5SWA1 713 aa10.78□□□□□ -0.68
PALB2-203ENST00000565038 WDR70Q9NW82 654 aa10.78□□□□□ -0.68
PALB2-203ENST00000565038 FOXK1P85037 733 aa10.77□□□□□ -0.69
PALB2-203ENST00000565038 PLPP6Q8IY26 295 aa10.77□□□□□ -0.69
PALB2-203ENST00000565038 HOXB3P14651 431 aaPredicted RBP10.68□□□□□ -0.7
PALB2-203ENST00000565038 E2F4Q16254 413 aa10.68□□□□□ -0.7
PALB2-203ENST00000565038 EMILIN3Q9NT22 766 aa10.66□□□□□ -0.7
PALB2-203ENST00000565038 CAMK2BQ13554 666 aa10.65□□□□□ -0.7
PALB2-203ENST00000565038 DOK7Q18PE1 504 aa10.65□□□□□ -0.7
PALB2-203ENST00000565038 UPF1Q92900 1129 aaKnown RBP eCLIP10.65□□□□□ -0.7
PALB2-203ENST00000565038 SNPHO15079 494 aa10.64□□□□□ -0.71
PALB2-203ENST00000565038 KCNV2Q8TDN2 545 aa10.64□□□□□ -0.71
PALB2-203ENST00000565038 ZNF710Q8N1W2 664 aa10.62□□□□□ -0.71
PALB2-203ENST00000565038 SLC34A2O95436 690 aa10.61□□□□□ -0.71
PALB2-203ENST00000565038 OXER1Q8TDS5 423 aa10.6□□□□□ -0.71
PALB2-203ENST00000565038 PTCD2Q8WV60 388 aaKnown RBP10.6□□□□□ -0.71
PALB2-203ENST00000565038 FAM163AQ96GL9 167 aaPredicted RBP10.6□□□□□ -0.71
PALB2-203ENST00000565038 DPYSL4O14531 572 aa10.59□□□□□ -0.71
PALB2-203ENST00000565038 PCDHGA4Q9Y5G9 962 aa10.59□□□□□ -0.71
PALB2-203ENST00000565038 RIMBP2O15034 1052 aa10.58□□□□□ -0.72
PALB2-203ENST00000565038 MAP3K9P80192 1104 aa10.58□□□□□ -0.72
PALB2-203ENST00000565038 ARSIQ5FYB1 569 aa10.58□□□□□ -0.72
PALB2-203ENST00000565038 P3H3Q8IVL6 736 aa10.58□□□□□ -0.72
PALB2-203ENST00000565038 KHSRPQ92945 711 aaKnown RBP eCLIP10.58□□□□□ -0.72
PALB2-203ENST00000565038 ST18O60284 1047 aa10.56□□□□□ -0.72
PALB2-203ENST00000565038 TBC1D12O60347 775 aa10.56□□□□□ -0.72
PALB2-203ENST00000565038 GPR153Q6NV75 609 aa10.55□□□□□ -0.72
PALB2-203ENST00000565038 ARHGEF1Q92888 912 aaKnown RBP10.55□□□□□ -0.72
PALB2-203ENST00000565038 ZSWIM6Q9HCJ5 1215 aa10.54□□□□□ -0.72
PALB2-203ENST00000565038 NUDT7P0C024 238 aa10.53□□□□□ -0.72
PALB2-203ENST00000565038 HOXB1P14653 301 aaPredicted RBP10.52□□□□□ -0.73
PALB2-203ENST00000565038 EVI5O60447 810 aa10.51□□□□□ -0.73
PALB2-203ENST00000565038 ARIH1Q9Y4X5 557 aaPredicted RBP10.51□□□□□ -0.73
PALB2-203ENST00000565038 LCE2DQ5TA82 110 aaPredicted RBP10.5□□□□□ -0.73
PALB2-203ENST00000565038 MARVELD3Q96A59 401 aa10.49□□□□□ -0.73
PALB2-203ENST00000565038 KDM4FA0A1W2PPD8 638 aa10.47□□□□□ -0.73
PALB2-203ENST00000565038 PDIA6Q15084 440 aa10.47□□□□□ -0.73
PALB2-203ENST00000565038 SPDYE16A6NNV3 312 aaPredicted RBP10.46□□□□□ -0.73
PALB2-203ENST00000565038 ZNF316A6NFI3 1004 aaPredicted RBP10.45□□□□□ -0.74
PALB2-203ENST00000565038 SEMA3EO15041 775 aa10.44□□□□□ -0.74
PALB2-203ENST00000565038 EMP3P54852 163 aa10.44□□□□□ -0.74
PALB2-203ENST00000565038 ANO8Q9HCE9 1232 aaPredicted RBP10.44□□□□□ -0.74
PALB2-203ENST00000565038 LHX6Q9UPM6 363 aa10.44□□□□□ -0.74
PALB2-203ENST00000565038 NBR1Q14596 966 aa10.42□□□□□ -0.74
PALB2-203ENST00000565038 DDX12PQ92771 950 aa10.42□□□□□ -0.74
PALB2-203ENST00000565038 ERBB3P21860 1342 aa10.4□□□□□ -0.74
PALB2-203ENST00000565038 FAM205CA6NFA0 338 aa10.4□□□□□ -0.74
PALB2-203ENST00000565038 GRXCR2A6NFK2 248 aa10.4□□□□□ -0.74
PALB2-203ENST00000565038 MLLT3P42568 568 aaPredicted RBP10.4□□□□□ -0.74
PALB2-203ENST00000565038 PTGER2P43116 358 aa10.37□□□□□ -0.75
PALB2-203ENST00000565038 VARS2Q5ST30 1063 aaKnown RBP10.37□□□□□ -0.75
PALB2-203ENST00000565038 ZNF454Q8N9F8 522 aa10.37□□□□□ -0.75
PALB2-203ENST00000565038 POTEB3A0JP26 581 aa10.35□□□□□ -0.75
PALB2-203ENST00000565038 TESPA1A2RU30 521 aaPredicted RBP10.35□□□□□ -0.75
PALB2-203ENST00000565038 FOSBP53539 338 aa10.35□□□□□ -0.75
PALB2-203ENST00000565038 POTEBQ6S5H4 581 aa10.35□□□□□ -0.75
PALB2-203ENST00000565038 PCDHGA10Q9Y5H3 936 aa10.35□□□□□ -0.75
PALB2-203ENST00000565038 BCANQ96GW7 911 aa10.34□□□□□ -0.75
PALB2-203ENST00000565038 JPH4Q96JJ6 628 aa10.34□□□□□ -0.75
PALB2-203ENST00000565038 HS3ST6Q96QI5 342 aa10.34□□□□□ -0.75
PALB2-203ENST00000565038 PHF14O94880 888 aa10.33□□□□□ -0.76
PALB2-203ENST00000565038 PSDA5PKW4 1024 aaPredicted RBP10.31□□□□□ -0.76
PALB2-203ENST00000565038 PRIM1P49642 420 aaKnown RBP10.31□□□□□ -0.76
PALB2-203ENST00000565038 PPP4R3BQ5MIZ7 849 aa10.31□□□□□ -0.76
PALB2-203ENST00000565038 TYW1BQ6NUM6 668 aa10.31□□□□□ -0.76
PALB2-203ENST00000565038 POTEGQ6S5H5 508 aa10.31□□□□□ -0.76
PALB2-203ENST00000565038 RBM33Q96EV2 1170 aaKnown RBP10.31□□□□□ -0.76
PALB2-203ENST00000565038 POTEMA6NI47 508 aa10.3□□□□□ -0.76
PALB2-203ENST00000565038 OSBPP22059 807 aa10.3□□□□□ -0.76
PALB2-203ENST00000565038 ZDHHC16Q969W1 377 aa10.3□□□□□ -0.76
PALB2-203ENST00000565038 EPAS1Q99814 870 aa10.3□□□□□ -0.76
PALB2-203ENST00000565038 ADAM33Q9BZ11 813 aa10.29□□□□□ -0.76
PALB2-203ENST00000565038 SMYD5Q6GMV2 418 aa10.28□□□□□ -0.76
PALB2-203ENST00000565038 RBM26Q5T8P6 1007 aaKnown RBP10.27□□□□□ -0.77
PALB2-203ENST00000565038 FBXW7Q969H0 707 aa10.27□□□□□ -0.77
PALB2-203ENST00000565038 MAP3K7O43318 606 aa10.26□□□□□ -0.77
PALB2-203ENST00000565038 EN1Q05925 392 aaPredicted RBP10.25□□□□□ -0.77
PALB2-203ENST00000565038 ZNF687Q8N1G0 1237 aa10.25□□□□□ -0.77
PALB2-203ENST00000565038 TULP1O00294 542 aaPredicted RBP10.24□□□□□ -0.77
PALB2-203ENST00000565038 TSR1Q2NL82 804 aaKnown RBP10.24□□□□□ -0.77
PALB2-203ENST00000565038 BCL2L12Q9HB09 334 aa10.24□□□□□ -0.77
PALB2-203ENST00000565038 AXIN2Q9Y2T1 843 aa10.24□□□□□ -0.77
PALB2-203ENST00000565038 POTEEQ6S8J3 1075 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms