RNA–Protein interactions for RNA: ENST00000564540.5

UBR1-205, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 3

Gene UBR1, Length 735 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-205ENST00000564540 MFRPQ9BY79 579 aa13.75□□□□□ -0.21
UBR1-205ENST00000564540 MS4A4AQ96JQ5 239 aa13.73□□□□□ -0.21
UBR1-205ENST00000564540 FBXO22Q8NEZ5 403 aa13.72□□□□□ -0.21
UBR1-205ENST00000564540 NKX1-1Q15270 411 aaPredicted RBP13.71□□□□□ -0.21
UBR1-205ENST00000564540 NLRP6P59044 892 aa13.7□□□□□ -0.22
UBR1-205ENST00000564540 DNAJC5Q9H3Z4 198 aa13.69□□□□□ -0.22
UBR1-205ENST00000564540 HOXB3P14651 431 aaPredicted RBP13.67□□□□□ -0.22
UBR1-205ENST00000564540 HOXB1P14653 301 aaPredicted RBP13.62□□□□□ -0.23
UBR1-205ENST00000564540 BOLA1Q9Y3E2 137 aa13.62□□□□□ -0.23
UBR1-205ENST00000564540 PPP1R37O75864 691 aa13.58□□□□□ -0.24
UBR1-205ENST00000564540 G3V3G9 751 aa13.56□□□□□ -0.24
UBR1-205ENST00000564540 BBXQ8WY36 941 aaPredicted RBP13.56□□□□□ -0.24
UBR1-205ENST00000564540 MICALL2Q8IY33 904 aa13.55□□□□□ -0.24
UBR1-205ENST00000564540 GTPBP6O43824 516 aaPredicted RBP13.54□□□□□ -0.24
UBR1-205ENST00000564540 DOK7Q18PE1 504 aa13.54□□□□□ -0.24
UBR1-205ENST00000564540 ZNF710Q8N1W2 664 aa13.54□□□□□ -0.24
UBR1-205ENST00000564540 ERBB3P21860 1342 aa13.5□□□□□ -0.25
UBR1-205ENST00000564540 RYDENQ9NUL5 291 aaKnown RBP13.49□□□□□ -0.25
UBR1-205ENST00000564540 RNF166Q96A37 237 aaPredicted RBP13.47□□□□□ -0.25
UBR1-205ENST00000564540 RIMBP2O15034 1052 aa13.45□□□□□ -0.26
UBR1-205ENST00000564540 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.45□□□□□ -0.26
UBR1-205ENST00000564540 TMEM92Q6UXU6 159 aa13.43□□□□□ -0.26
UBR1-205ENST00000564540 ZSWIM6Q9HCJ5 1215 aa13.43□□□□□ -0.26
UBR1-205ENST00000564540 VARS2Q5ST30 1063 aaKnown RBP13.41□□□□□ -0.26
UBR1-205ENST00000564540 PAXIP1Q6ZW49 1069 aaPredicted RBP13.4□□□□□ -0.26
UBR1-205ENST00000564540 MYT1LQ9UL68 1186 aa13.4□□□□□ -0.26
UBR1-205ENST00000564540 SPRYD3Q8NCJ5 442 aa13.39□□□□□ -0.27
UBR1-205ENST00000564540 ZNF687Q8N1G0 1237 aa13.38□□□□□ -0.27
UBR1-205ENST00000564540 CFAP44Q96MT7 982 aa13.38□□□□□ -0.27
UBR1-205ENST00000564540 PTGER2P43116 358 aa13.34□□□□□ -0.27
UBR1-205ENST00000564540 GPR153Q6NV75 609 aa13.33□□□□□ -0.28
UBR1-205ENST00000564540 C2orf72A6NCS6 295 aa13.3□□□□□ -0.28
UBR1-205ENST00000564540 KIF3CO14782 793 aa13.28□□□□□ -0.28
UBR1-205ENST00000564540 CADPS2Q86UW7 1296 aa13.27□□□□□ -0.29
UBR1-205ENST00000564540 TMC2Q8TDI7 906 aa13.26□□□□□ -0.29
UBR1-205ENST00000564540 NCKAP5LQ9HCH0 1330 aa13.23□□□□□ -0.29
UBR1-205ENST00000564540 GPHNQ9NQX3 736 aaPredicted RBP13.22□□□□□ -0.29
UBR1-205ENST00000564540 CRISPLD2Q9H0B8 497 aa13.21□□□□□ -0.29
UBR1-205ENST00000564540 DSG2Q14126 1118 aa13.18□□□□□ -0.3
UBR1-205ENST00000564540 PLCB2Q00722 1185 aa13.17□□□□□ -0.3
UBR1-205ENST00000564540 ARSIQ5FYB1 569 aa13.17□□□□□ -0.3
UBR1-205ENST00000564540 ZNF316A6NFI3 1004 aaPredicted RBP13.15□□□□□ -0.3
UBR1-205ENST00000564540 PDE4AP27815 886 aa13.15□□□□□ -0.3
UBR1-205ENST00000564540 FOXK1P85037 733 aa13.15□□□□□ -0.3
UBR1-205ENST00000564540 LARP6Q9BRS8 491 aaKnown RBP13.15□□□□□ -0.3
UBR1-205ENST00000564540 ANKRD13DQ6ZTN6 518 aa13.14□□□□□ -0.31
UBR1-205ENST00000564540 TSHZ2Q9NRE2 1034 aa13.14□□□□□ -0.31
UBR1-205ENST00000564540 LSM11P83369 360 aaKnown RBP eCLIP13.13□□□□□ -0.31
UBR1-205ENST00000564540 PLPP6Q8IY26 295 aa13.13□□□□□ -0.31
UBR1-205ENST00000564540 PPP1R15BQ5SWA1 713 aa13.1□□□□□ -0.31
UBR1-205ENST00000564540 DDX27Q96GQ7 796 aaKnown RBP13.09□□□□□ -0.31
UBR1-205ENST00000564540 MFSD10Q14728 455 aa13.07□□□□□ -0.32
UBR1-205ENST00000564540 KHSRPQ92945 711 aaKnown RBP eCLIP13.07□□□□□ -0.32
UBR1-205ENST00000564540 PBX2P40425 430 aa13.06□□□□□ -0.32
UBR1-205ENST00000564540 SLC34A2O95436 690 aa13.03□□□□□ -0.32
UBR1-205ENST00000564540 HAP1P54257 671 aaPredicted RBP12.99□□□□□ -0.33
UBR1-205ENST00000564540 UPF1Q92900 1129 aaKnown RBP eCLIP12.99□□□□□ -0.33
UBR1-205ENST00000564540 PCDHGA4Q9Y5G9 962 aa12.99□□□□□ -0.33
UBR1-205ENST00000564540 PTCD2Q8WV60 388 aaKnown RBP12.98□□□□□ -0.33
UBR1-205ENST00000564540 POTEEQ6S8J3 1075 aa12.97□□□□□ -0.33
UBR1-205ENST00000564540 OXER1Q8TDS5 423 aa12.95□□□□□ -0.34
UBR1-205ENST00000564540 EMILIN3Q9NT22 766 aa12.95□□□□□ -0.34
UBR1-205ENST00000564540 PLA2G2EQ9NZK7 142 aa12.95□□□□□ -0.34
UBR1-205ENST00000564540 HCSTQ9UBK5 93 aa12.95□□□□□ -0.34
UBR1-205ENST00000564540 NUDT7P0C024 238 aa12.94□□□□□ -0.34
UBR1-205ENST00000564540 WDR70Q9NW82 654 aa12.93□□□□□ -0.34
UBR1-205ENST00000564540 CAMK2BQ13554 666 aa12.91□□□□□ -0.34
UBR1-205ENST00000564540 LHX6Q9UPM6 363 aa12.91□□□□□ -0.34
UBR1-205ENST00000564540 TBC1D12O60347 775 aa12.89□□□□□ -0.35
UBR1-205ENST00000564540 AXIN2Q9Y2T1 843 aa12.89□□□□□ -0.35
UBR1-205ENST00000564540 KDM4FA0A1W2PPD8 638 aa12.88□□□□□ -0.35
UBR1-205ENST00000564540 E2F4Q16254 413 aa12.86□□□□□ -0.35
UBR1-205ENST00000564540 MAP3K9P80192 1104 aa12.85□□□□□ -0.35
UBR1-205ENST00000564540 DPYSL4O14531 572 aa12.84□□□□□ -0.35
UBR1-205ENST00000564540 ADGRD1Q6QNK2 874 aa12.84□□□□□ -0.35
UBR1-205ENST00000564540 KDM2AQ9Y2K7 1162 aa12.83□□□□□ -0.36
UBR1-205ENST00000564540 PSDA5PKW4 1024 aaPredicted RBP12.82□□□□□ -0.36
UBR1-205ENST00000564540 ARHGAP33O14559 1287 aa12.82□□□□□ -0.36
UBR1-205ENST00000564540 EVI5O60447 810 aa12.81□□□□□ -0.36
UBR1-205ENST00000564540 TK2O00142 265 aa12.8□□□□□ -0.36
UBR1-205ENST00000564540 HRO43593 1189 aa12.77□□□□□ -0.37
UBR1-205ENST00000564540 KCNV2Q8TDN2 545 aa12.76□□□□□ -0.37
UBR1-205ENST00000564540 ANO8Q9HCE9 1232 aaPredicted RBP12.75□□□□□ -0.37
UBR1-205ENST00000564540 VSIG10Q8N0Z9 540 aa12.72□□□□□ -0.37
UBR1-205ENST00000564540 ARIH1Q9Y4X5 557 aaPredicted RBP12.72□□□□□ -0.37
UBR1-205ENST00000564540 PDIA6Q15084 440 aa12.7□□□□□ -0.38
UBR1-205ENST00000564540 DMRTA1Q5VZB9 504 aa12.69□□□□□ -0.38
UBR1-205ENST00000564540 ZNF454Q8N9F8 522 aa12.69□□□□□ -0.38
UBR1-205ENST00000564540 FOSBP53539 338 aa12.67□□□□□ -0.38
UBR1-205ENST00000564540 ARHGEF1Q92888 912 aaKnown RBP12.67□□□□□ -0.38
UBR1-205ENST00000564540 PPP4R3BQ5MIZ7 849 aa12.66□□□□□ -0.38
UBR1-205ENST00000564540 P3H3Q8IVL6 736 aa12.66□□□□□ -0.38
UBR1-205ENST00000564540 SPDYE16A6NNV3 312 aaPredicted RBP12.65□□□□□ -0.38
UBR1-205ENST00000564540 PSEN2P49810 448 aa12.65□□□□□ -0.38
UBR1-205ENST00000564540 DDX12PQ92771 950 aa12.65□□□□□ -0.38
UBR1-205ENST00000564540 JPH4Q96JJ6 628 aa12.65□□□□□ -0.38
UBR1-205ENST00000564540 RGS20O76081 388 aa12.63□□□□□ -0.39
UBR1-205ENST00000564540 PCDHGA10Q9Y5H3 936 aa12.63□□□□□ -0.39
UBR1-205ENST00000564540 KCTD12Q96CX2 325 aaKnown RBP12.62□□□□□ -0.39
UBR1-205ENST00000564540 IFFO2Q5TF58 517 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms