RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 CFDP1Q9UEE9 299 aaPredicted RBP19.5■□□□□ 0.71
CLK3-214ENST00000564096 GLI2P10070 1586 aa19.49■□□□□ 0.71
CLK3-214ENST00000564096 DIP2BQ9P265 1576 aa19.49■□□□□ 0.71
CLK3-214ENST00000564096 PLCH2O75038 1416 aa19.48■□□□□ 0.71
CLK3-214ENST00000564096 CAMSAP2Q08AD1 1489 aa19.47■□□□□ 0.71
CLK3-214ENST00000564096 FAM50AQ14320 339 aaKnown RBP19.46■□□□□ 0.71
CLK3-214ENST00000564096 PLEKHH2Q8IVE3 1493 aa19.45■□□□□ 0.7
CLK3-214ENST00000564096 CFAP74Q9C0B2 1584 aa19.44■□□□□ 0.7
CLK3-214ENST00000564096 CD109Q6YHK3 1445 aa19.43■□□□□ 0.7
CLK3-214ENST00000564096 CDC42BPBQ9Y5S2 1711 aa19.42■□□□□ 0.7
CLK3-214ENST00000564096 PCGF6Q9BYE7 350 aa19.42■□□□□ 0.7
CLK3-214ENST00000564096 MAP3K4Q9Y6R4 1608 aa19.42■□□□□ 0.7
CLK3-214ENST00000564096 FANCAO15360 1455 aa19.41■□□□□ 0.7
CLK3-214ENST00000564096 EFCAB2Q5VUJ9 269 aa19.4■□□□□ 0.7
CLK3-214ENST00000564096 ZNF777Q9ULD5 760 aaPredicted RBP19.4■□□□□ 0.7
CLK3-214ENST00000564096 SAMD9LQ8IVG5 1584 aa19.4■□□□□ 0.7
CLK3-214ENST00000564096 FAM69CQ0P6D2 419 aa19.38■□□□□ 0.69
CLK3-214ENST00000564096 DNMT1P26358 1616 aaKnown RBP19.37■□□□□ 0.69
CLK3-214ENST00000564096 ABCC1P33527 1531 aa19.37■□□□□ 0.69
CLK3-214ENST00000564096 KIAA1107Q9UPP5 1409 aa19.37■□□□□ 0.69
CLK3-214ENST00000564096 TEX14Q8IWB6 1497 aa19.36■□□□□ 0.69
CLK3-214ENST00000564096 ARHGEF5Q12774 1597 aa19.36■□□□□ 0.69
CLK3-214ENST00000564096 SYCP2Q9BX26 1530 aa19.35■□□□□ 0.69
CLK3-214ENST00000564096 NEO1Q92859 1461 aa19.35■□□□□ 0.69
CLK3-214ENST00000564096 DAPK1P53355 1430 aa19.34■□□□□ 0.69
CLK3-214ENST00000564096 CCDC141Q6ZP82 1450 aa19.34■□□□□ 0.69
CLK3-214ENST00000564096 SHANK2Q9UPX8 1470 aa19.34■□□□□ 0.69
CLK3-214ENST00000564096 ADGRL1O94910 1474 aa19.33■□□□□ 0.68
CLK3-214ENST00000564096 ZNF644Q9H582 1327 aaPredicted RBP19.32■□□□□ 0.68
CLK3-214ENST00000564096 ITGAEP38570 1179 aa19.32■□□□□ 0.68
CLK3-214ENST00000564096 CROCC2H7BZ55 1655 aa19.32■□□□□ 0.68
CLK3-214ENST00000564096 KIF13AQ9H1H9 1805 aa19.31■□□□□ 0.68
CLK3-214ENST00000564096 RSPH4AQ5TD94 716 aa19.31■□□□□ 0.68
CLK3-214ENST00000564096 AKNAQ7Z591 1439 aa19.3■□□□□ 0.68
CLK3-214ENST00000564096 MBD5Q9P267 1494 aa19.29■□□□□ 0.68
CLK3-214ENST00000564096 ABCC5O15440 1437 aa19.29■□□□□ 0.68
CLK3-214ENST00000564096 C9orf84Q5VXU9 1444 aa19.25■□□□□ 0.67
CLK3-214ENST00000564096 ADGBQ8N7X0 1667 aa19.25■□□□□ 0.67
CLK3-214ENST00000564096 ROCK1Q13464 1354 aa19.25■□□□□ 0.67
CLK3-214ENST00000564096 SCAPERQ9BY12 1400 aa19.25■□□□□ 0.67
CLK3-214ENST00000564096 MAST1Q9Y2H9 1570 aa19.24■□□□□ 0.67
CLK3-214ENST00000564096 ZNF518AQ6AHZ1 1483 aa19.24■□□□□ 0.67
CLK3-214ENST00000564096 TSPY4P0CV99 314 aa19.24■□□□□ 0.67
CLK3-214ENST00000564096 TSPY10P0CW01 314 aa19.24■□□□□ 0.67
CLK3-214ENST00000564096 TRHP20396 242 aaPredicted RBP19.24■□□□□ 0.67
CLK3-214ENST00000564096 ARHGEF12Q9NZN5 1544 aa19.24■□□□□ 0.67
CLK3-214ENST00000564096 POGZQ7Z3K3 1410 aa19.24■□□□□ 0.67
CLK3-214ENST00000564096 PPRC1Q5VV67 1664 aaKnown RBP19.24■□□□□ 0.67
CLK3-214ENST00000564096 ADGRL2O95490 1459 aa19.23■□□□□ 0.67
CLK3-214ENST00000564096 HNRNPMP52272 730 aaKnown RBP eCLIP19.23■□□□□ 0.674e-10■■■■■ 39.1
CLK3-214ENST00000564096 PTPRKQ15262 1439 aa19.23■□□□□ 0.67
CLK3-214ENST00000564096 HFM1A2PYH4 1435 aa19.22■□□□□ 0.67
CLK3-214ENST00000564096 DENND4BO75064 1496 aaPredicted RBP19.22■□□□□ 0.67
CLK3-214ENST00000564096 ANKRD30AQ9BXX3 1397 aa19.21■□□□□ 0.67
CLK3-214ENST00000564096 TRAPPC8Q9Y2L5 1435 aa19.2■□□□□ 0.66
CLK3-214ENST00000564096 TSPOAP1O95153 1857 aa19.2■□□□□ 0.66
CLK3-214ENST00000564096 GCC2Q8IWJ2 1684 aa19.19■□□□□ 0.66
CLK3-214ENST00000564096 PLXNC1O60486 1568 aa19.19■□□□□ 0.66
CLK3-214ENST00000564096 ZFYVE16Q7Z3T8 1539 aa19.18■□□□□ 0.66
CLK3-214ENST00000564096 KDM5CP41229 1560 aa19.18■□□□□ 0.66
CLK3-214ENST00000564096 RTEL1-TNFRSF6BF6WH68 1400 aa19.17■□□□□ 0.66
CLK3-214ENST00000564096 SETD5Q9C0A6 1442 aa19.17■□□□□ 0.66
CLK3-214ENST00000564096 INO80Q9ULG1 1556 aaPredicted RBP19.16■□□□□ 0.66
CLK3-214ENST00000564096 CHIC2Q9UKJ5 165 aa19.16■□□□□ 0.66
CLK3-214ENST00000564096 SPAG9O60271 1321 aaKnown RBP19.16■□□□□ 0.66
CLK3-214ENST00000564096 ATP7AQ04656 1500 aa19.15■□□□□ 0.66
CLK3-214ENST00000564096 NCOA1Q15788 1441 aa19.15■□□□□ 0.66
CLK3-214ENST00000564096 HECW2Q9P2P5 1572 aa19.15■□□□□ 0.66
CLK3-214ENST00000564096 NAIPQ13075 1403 aa19.14■□□□□ 0.65
CLK3-214ENST00000564096 KIF15Q9NS87 1388 aa19.13■□□□□ 0.65
CLK3-214ENST00000564096 RICTORQ6R327 1708 aa19.11■□□□□ 0.65
CLK3-214ENST00000564096 ZMYM4Q5VZL5 1548 aa19.11■□□□□ 0.65
CLK3-214ENST00000564096 MLH3Q9UHC1 1453 aa19.11■□□□□ 0.65
CLK3-214ENST00000564096 ACIN1Q9UKV3 1341 aaKnown RBP19.11■□□□□ 0.65
CLK3-214ENST00000564096 AFAP1Q8N556 730 aa19.11■□□□□ 0.65
CLK3-214ENST00000564096 RAB3GAP2Q9H2M9 1393 aa19.1■□□□□ 0.65
CLK3-214ENST00000564096 RRP7BPQ9NSQ0 103 aa19.1■□□□□ 0.65
CLK3-214ENST00000564096 FRMPD1Q5SYB0 1578 aa19.1■□□□□ 0.65
CLK3-214ENST00000564096 MYT1LQ9UL68 1186 aa19.09■□□□□ 0.65
CLK3-214ENST00000564096 DUOX2Q9NRD8 1548 aa19.09■□□□□ 0.65
CLK3-214ENST00000564096 MAGI2Q86UL8 1455 aa19.07■□□□□ 0.64
CLK3-214ENST00000564096 ERBINQ96RT1 1412 aa19.07■□□□□ 0.64
CLK3-214ENST00000564096 ANKRD50Q9ULJ7 1429 aa19.07■□□□□ 0.64
CLK3-214ENST00000564096 HRCP23327 699 aa19.05■□□□□ 0.64
CLK3-214ENST00000564096 KIDINS220Q9ULH0 1771 aa19.04■□□□□ 0.64
CLK3-214ENST00000564096 RAPGEF3O95398 923 aa19.04■□□□□ 0.64
CLK3-214ENST00000564096 KDM6BO15054 1643 aa19.03■□□□□ 0.64
CLK3-214ENST00000564096 ABCA6Q8N139 1617 aa19.01■□□□□ 0.63
CLK3-214ENST00000564096 ARHGEF40Q8TER5 1519 aa19■□□□□ 0.63
CLK3-214ENST00000564096 EIF2AK4Q9P2K8 1649 aaKnown RBP19■□□□□ 0.63
CLK3-214ENST00000564096 DIP2CQ9Y2E4 1556 aa19■□□□□ 0.63
CLK3-214ENST00000564096 A2MP01023 1474 aa18.99■□□□□ 0.63
CLK3-214ENST00000564096 COL17A1Q9UMD9 1497 aaPredicted RBP18.97■□□□□ 0.63
CLK3-214ENST00000564096 DHX29Q7Z478 1369 aaKnown RBP18.97■□□□□ 0.63
CLK3-214ENST00000564096 UNC13BO14795 1591 aa18.95■□□□□ 0.62
CLK3-214ENST00000564096 REREQ9P2R6 1566 aa18.95■□□□□ 0.62
CLK3-214ENST00000564096 YEATS2Q9ULM3 1422 aa18.94■□□□□ 0.62
CLK3-214ENST00000564096 SENP3Q9H4L4 574 aaPredicted RBP18.93■□□□□ 0.62
CLK3-214ENST00000564096 KDM5DQ9BY66 1539 aa18.93■□□□□ 0.62
CLK3-214ENST00000564096 ATP10AO60312 1499 aa18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms