RNA–Protein interactions for RNA: ENST00000563410.1

CHD9-208, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 2

Gene CHD9, Length 488 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-208ENST00000563410 YEATS2Q9ULM3 1422 aa34.45■■■■□ 3.11
CHD9-208ENST00000563410 TROQ12816 1431 aaPredicted RBP34.43■■■■□ 3.1
CHD9-208ENST00000563410 MAGI2Q86UL8 1455 aa34.43■■■■□ 3.1
CHD9-208ENST00000563410 POGZQ7Z3K3 1410 aa34.42■■■■□ 3.1
CHD9-208ENST00000563410 RIMS1Q86UR5 1692 aaKnown RBP34.4■■■■□ 3.1
CHD9-208ENST00000563410 PCF11O94913 1555 aaKnown RBP34.38■■■■□ 3.09
CHD9-208ENST00000563410 EFCAB2Q5VUJ9 269 aa34.37■■■■□ 3.09
CHD9-208ENST00000563410 ILDR1Q86SU0 546 aaPredicted RBP34.36■■■■□ 3.09
CHD9-208ENST00000563410 CLIP1P30622 1438 aa34.34■■■■□ 3.09
CHD9-208ENST00000563410 CASKIN1Q8WXD9 1431 aa34.34■■■■□ 3.09
CHD9-208ENST00000563410 CDC42BPBQ9Y5S2 1711 aa34.31■■■■□ 3.08
CHD9-208ENST00000563410 ARHGAP5Q13017 1502 aa34.3■■■■□ 3.08
CHD9-208ENST00000563410 CCDC18Q5T9S5 1454 aa34.28■■■■□ 3.08
CHD9-208ENST00000563410 ATP10AO60312 1499 aa34.24■■■■□ 3.07
CHD9-208ENST00000563410 ZNF518AQ6AHZ1 1483 aa34.24■■■■□ 3.07
CHD9-208ENST00000563410 KDM5CP41229 1560 aa34.23■■■■□ 3.07
CHD9-208ENST00000563410 FER1L4A9Z1Z3 1794 aa34.23■■■■□ 3.07
CHD9-208ENST00000563410 PREX2Q70Z35 1606 aa34.22■■■■□ 3.07
CHD9-208ENST00000563410 LMTK3Q96Q04 1460 aa34.22■■■■□ 3.07
CHD9-208ENST00000563410 FYCO1Q9BQS8 1478 aa34.2■■■■□ 3.07
CHD9-208ENST00000563410 C9orf84Q5VXU9 1444 aa34.2■■■■□ 3.06
CHD9-208ENST00000563410 MLECQ14165 292 aa34.18■■■■□ 3.06
CHD9-208ENST00000563410 AFAP1Q8N556 730 aa34.18■■■■□ 3.06
CHD9-208ENST00000563410 CDC42BPAQ5VT25 1732 aa34.16■■■■□ 3.06
CHD9-208ENST00000563410 ARHGEF12Q9NZN5 1544 aa34.15■■■■□ 3.06
CHD9-208ENST00000563410 ABCC1P33527 1531 aa34.12■■■■□ 3.05
CHD9-208ENST00000563410 ITSN2Q9NZM3 1697 aa34.12■■■■□ 3.05
CHD9-208ENST00000563410 DIP2CQ9Y2E4 1556 aa34.11■■■■□ 3.05
CHD9-208ENST00000563410 PLPPR3Q6T4P5 718 aa34.1■■■■□ 3.05
CHD9-208ENST00000563410 TRAPPC8Q9Y2L5 1435 aa34.07■■■■□ 3.04
CHD9-208ENST00000563410 ABCA6Q8N139 1617 aa34.07■■■■□ 3.04
CHD9-208ENST00000563410 MLH3Q9UHC1 1453 aa34.07■■■■□ 3.04
CHD9-208ENST00000563410 REREQ9P2R6 1566 aa34.05■■■■□ 3.04
CHD9-208ENST00000563410 MYT1LQ9UL68 1186 aa34.01■■■■□ 3.03
CHD9-208ENST00000563410 HSPA2P54652 639 aa34■■■■□ 3.03
CHD9-208ENST00000563410 KIDINS220Q9ULH0 1771 aa34■■■■□ 3.03
CHD9-208ENST00000563410 SAMD9LQ8IVG5 1584 aa33.98■■■■□ 3.03
CHD9-208ENST00000563410 GPATCH8Q9UKJ3 1502 aaKnown RBP33.97■■■■□ 3.03
CHD9-208ENST00000563410 PREX1Q8TCU6 1659 aa33.93■■■■□ 3.02
CHD9-208ENST00000563410 AGLP35573 1532 aa33.93■■■■□ 3.02
CHD9-208ENST00000563410 CEBPAP49715 358 aaPredicted RBP33.92■■■■□ 3.02
CHD9-208ENST00000563410 SYCP2Q9BX26 1530 aa33.9■■■■□ 3.02
CHD9-208ENST00000563410 ZNF777Q9ULD5 760 aaPredicted RBP33.89■■■■□ 3.02
CHD9-208ENST00000563410 SETD1BQ9UPS6 1966 aaKnown RBP33.88■■■■□ 3.01
CHD9-208ENST00000563410 FBXO41Q8TF61 875 aa33.85■■■■□ 3.01
CHD9-208ENST00000563410 C3P01024 1663 aa33.84■■■■□ 3.01
CHD9-208ENST00000563410 MTUS2Q5JR59 1369 aa33.83■■■■□ 3.01
CHD9-208ENST00000563410 HNRNPMP52272 730 aaKnown RBP eCLIP33.82■■■■□ 31e-6■■■■□ 24.8
CHD9-208ENST00000563410 CCNB3Q8WWL7 1395 aa33.81■■■■□ 3
CHD9-208ENST00000563410 CEP162Q5TB80 1403 aa33.8■■■■□ 3
CHD9-208ENST00000563410 KIAA1107Q9UPP5 1409 aa33.79■■■■□ 3
CHD9-208ENST00000563410 CFDP1Q9UEE9 299 aaPredicted RBP33.79■■■■□ 3
CHD9-208ENST00000563410 PLEKHH2Q8IVE3 1493 aa33.77■■■■□ 3
CHD9-208ENST00000563410 SPAG9O60271 1321 aaKnown RBP33.77■■■■□ 3
CHD9-208ENST00000563410 TIAM1Q13009 1591 aa33.77■■■■□ 3
CHD9-208ENST00000563410 EHBP1L1Q8N3D4 1523 aa33.76■■■■□ 3
CHD9-208ENST00000563410 INO80Q9ULG1 1556 aaPredicted RBP33.76■■■□□ 2.99
CHD9-208ENST00000563410 ATP7AQ04656 1500 aa33.75■■■□□ 2.99
CHD9-208ENST00000563410 SUPT6HQ7KZ85 1726 aaKnown RBP33.74■■■□□ 2.99
CHD9-208ENST00000563410 STRCQ7RTU9 1775 aa33.72■■■□□ 2.99
CHD9-208ENST00000563410 UHRF1BP1Q6BDS2 1440 aa33.72■■■□□ 2.99
CHD9-208ENST00000563410 ESF1Q9H501 851 aaKnown RBP33.69■■■□□ 2.98
CHD9-208ENST00000563410 PLXNC1O60486 1568 aa33.68■■■□□ 2.98
CHD9-208ENST00000563410 CNTLNQ9NXG0 1405 aa33.68■■■□□ 2.98
CHD9-208ENST00000563410 MROH2AA6NES4 1674 aa33.67■■■□□ 2.98
CHD9-208ENST00000563410 ZNF644Q9H582 1327 aaPredicted RBP33.66■■■□□ 2.98
CHD9-208ENST00000563410 A2MP01023 1474 aa33.63■■■□□ 2.97
CHD9-208ENST00000563410 MBD5Q9P267 1494 aa33.63■■■□□ 2.97
CHD9-208ENST00000563410 ADGBQ8N7X0 1667 aa33.61■■■□□ 2.97
CHD9-208ENST00000563410 CLTCQ00610 1675 aaKnown RBP33.58■■■□□ 2.97
CHD9-208ENST00000563410 CERKQ8TCT0 537 aa33.56■■■□□ 2.96
CHD9-208ENST00000563410 ZMYM3Q14202 1370 aa33.55■■■□□ 2.96
CHD9-208ENST00000563410 NCOA2Q15596 1464 aa33.55■■■□□ 2.96
CHD9-208ENST00000563410 DMRT2Q9Y5R5 561 aa33.53■■■□□ 2.96
CHD9-208ENST00000563410 NPATQ14207 1427 aa33.53■■■□□ 2.96
CHD9-208ENST00000563410 RTEL1-TNFRSF6BF6WH68 1400 aa33.51■■■□□ 2.95
CHD9-208ENST00000563410 LOC105371045A0A1W2PR82 267 aa33.5■■■□□ 2.95
CHD9-208ENST00000563410 CAMSAP2Q08AD1 1489 aa33.48■■■□□ 2.95
CHD9-208ENST00000563410 GGT6Q6P531 493 aa33.47■■■□□ 2.95
CHD9-208ENST00000563410 VPS8Q8N3P4 1428 aa33.46■■■□□ 2.95
CHD9-208ENST00000563410 PTPRTO14522 1441 aa33.45■■■□□ 2.95
CHD9-208ENST00000563410 NCOA1Q15788 1441 aa33.44■■■□□ 2.94
CHD9-208ENST00000563410 CCDC141Q6ZP82 1450 aa33.44■■■□□ 2.94
CHD9-208ENST00000563410 DHX29Q7Z478 1369 aaKnown RBP33.41■■■□□ 2.94
CHD9-208ENST00000563410 PTPRKQ15262 1439 aa33.41■■■□□ 2.94
CHD9-208ENST00000563410 MYO3AQ8NEV4 1616 aa33.4■■■□□ 2.94
CHD9-208ENST00000563410 PPP6R1Q9UPN7 881 aa33.4■■■□□ 2.94
CHD9-208ENST00000563410 ZNF142P52746 1687 aaPredicted RBP33.39■■■□□ 2.94
CHD9-208ENST00000563410 CAMSAP1Q5T5Y3 1602 aa33.39■■■□□ 2.94
CHD9-208ENST00000563410 LRRC9Q6ZRR7 1453 aa33.39■■■□□ 2.94
CHD9-208ENST00000563410 ARHGEF5Q12774 1597 aa33.36■■■□□ 2.93
CHD9-208ENST00000563410 RSPH4AQ5TD94 716 aa33.36■■■□□ 2.93
CHD9-208ENST00000563410 CEP170BQ9Y4F5 1589 aaPredicted RBP33.32■■■□□ 2.92
CHD9-208ENST00000563410 MAP3K1Q13233 1512 aa33.31■■■□□ 2.92
CHD9-208ENST00000563410 LTBP4Q8N2S1 1624 aa33.3■■■□□ 2.92
CHD9-208ENST00000563410 KIF3BO15066 747 aa33.28■■■□□ 2.92
CHD9-208ENST00000563410 KANK4Q5T7N3 995 aaPredicted RBP33.27■■■□□ 2.92
CHD9-208ENST00000563410 PLA2R1Q13018 1463 aa33.25■■■□□ 2.91
CHD9-208ENST00000563410 NCKAP5LQ9HCH0 1330 aa33.24■■■□□ 2.91
CHD9-208ENST00000563410 KDM5DQ9BY66 1539 aa33.23■■■□□ 2.91
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms