RNA–Protein interactions for RNA: ENST00000563184.1

LINC00557-201, long intergenic non-protein coding RNA 557, humanhuman

BASIC

Gene LINC00557, Length 1,279 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00557-201ENST00000563184 WDR70Q9NW82 654 aa13.24□□□□□ -0.29
LINC00557-201ENST00000563184 CRISPLD2Q9H0B8 497 aa13.23□□□□□ -0.29
LINC00557-201ENST00000563184 KCNV2Q8TDN2 545 aa13.21□□□□□ -0.29
LINC00557-201ENST00000563184 NBR1Q14596 966 aa13.19□□□□□ -0.3
LINC00557-201ENST00000563184 MICALL2Q8IY33 904 aa13.19□□□□□ -0.3
LINC00557-201ENST00000563184 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.19□□□□□ -0.3
LINC00557-201ENST00000563184 MFSD10Q14728 455 aa13.18□□□□□ -0.3
LINC00557-201ENST00000563184 P3H3Q8IVL6 736 aa13.18□□□□□ -0.3
LINC00557-201ENST00000563184 PDE4AP27815 886 aa13.17□□□□□ -0.3
LINC00557-201ENST00000563184 C3orf67Q6ZVT6 689 aa13.17□□□□□ -0.3
LINC00557-201ENST00000563184 LARP6Q9BRS8 491 aaKnown RBP13.17□□□□□ -0.3
LINC00557-201ENST00000563184 G3V3G9 751 aa13.16□□□□□ -0.3
LINC00557-201ENST00000563184 BOLA1Q9Y3E2 137 aa13.16□□□□□ -0.3
LINC00557-201ENST00000563184 SLAIN1Q8ND83 568 aa13.15□□□□□ -0.3
LINC00557-201ENST00000563184 TMEM121BQ9BXQ6 578 aaPredicted RBP13.14□□□□□ -0.31
LINC00557-201ENST00000563184 E2F4Q16254 413 aa13.12□□□□□ -0.31
LINC00557-201ENST00000563184 DDX27Q96GQ7 796 aaKnown RBP13.11□□□□□ -0.31
LINC00557-201ENST00000563184 GPHNQ9NQX3 736 aaPredicted RBP13.09□□□□□ -0.31
LINC00557-201ENST00000563184 PRKCSHP14314 528 aaPredicted RBP13.07□□□□□ -0.32
LINC00557-201ENST00000563184 CAMK2BQ13554 666 aa13.05□□□□□ -0.32
LINC00557-201ENST00000563184 ARHGEF1Q92888 912 aaKnown RBP13.05□□□□□ -0.32
LINC00557-201ENST00000563184 PPP1R15BQ5SWA1 713 aa13.04□□□□□ -0.32
LINC00557-201ENST00000563184 SNPHO15079 494 aa13.03□□□□□ -0.32
LINC00557-201ENST00000563184 KIF3CO14782 793 aa13.02□□□□□ -0.33
LINC00557-201ENST00000563184 DSG2Q14126 1118 aa13.02□□□□□ -0.33
LINC00557-201ENST00000563184 TPRNQ4KMQ1 711 aa13.01□□□□□ -0.33
LINC00557-201ENST00000563184 TMEM92Q6UXU6 159 aa13.01□□□□□ -0.33
LINC00557-201ENST00000563184 C2orf72A6NCS6 295 aa13□□□□□ -0.33
LINC00557-201ENST00000563184 TMC2Q8TDI7 906 aa13□□□□□ -0.33
LINC00557-201ENST00000563184 ARIH1Q9Y4X5 557 aaPredicted RBP13□□□□□ -0.33
LINC00557-201ENST00000563184 FOXK1P85037 733 aa12.99□□□□□ -0.33
LINC00557-201ENST00000563184 FAM163AQ96GL9 167 aaPredicted RBP12.97□□□□□ -0.33
LINC00557-201ENST00000563184 LCE2DQ5TA82 110 aaPredicted RBP12.96□□□□□ -0.33
LINC00557-201ENST00000563184 EMILIN3Q9NT22 766 aa12.95□□□□□ -0.34
LINC00557-201ENST00000563184 PLPP6Q8IY26 295 aa12.93□□□□□ -0.34
LINC00557-201ENST00000563184 SEMA3EO15041 775 aa12.92□□□□□ -0.34
LINC00557-201ENST00000563184 TESPA1A2RU30 521 aaPredicted RBP12.9□□□□□ -0.34
LINC00557-201ENST00000563184 POTEMA6NI47 508 aa12.9□□□□□ -0.34
LINC00557-201ENST00000563184 POTEGQ6S5H5 508 aa12.89□□□□□ -0.35
LINC00557-201ENST00000563184 ST18O60284 1047 aa12.88□□□□□ -0.35
LINC00557-201ENST00000563184 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.87□□□□□ -0.35
LINC00557-201ENST00000563184 DPYSL4O14531 572 aa12.86□□□□□ -0.35
LINC00557-201ENST00000563184 DOK7Q18PE1 504 aa12.83□□□□□ -0.36
LINC00557-201ENST00000563184 LMOD2Q6P5Q4 547 aa12.83□□□□□ -0.36
LINC00557-201ENST00000563184 HOXB3P14651 431 aaPredicted RBP12.81□□□□□ -0.36
LINC00557-201ENST00000563184 PCDH10Q9P2E7 1040 aa12.8□□□□□ -0.36
LINC00557-201ENST00000563184 PDIA6Q15084 440 aa12.79□□□□□ -0.36
LINC00557-201ENST00000563184 OXER1Q8TDS5 423 aa12.78□□□□□ -0.36
LINC00557-201ENST00000563184 SPDYE16A6NNV3 312 aaPredicted RBP12.77□□□□□ -0.37
LINC00557-201ENST00000563184 RIMBP2O15034 1052 aa12.77□□□□□ -0.37
LINC00557-201ENST00000563184 MLLT3P42568 568 aaPredicted RBP12.77□□□□□ -0.37
LINC00557-201ENST00000563184 UPF1Q92900 1129 aaKnown RBP eCLIP12.77□□□□□ -0.37
LINC00557-201ENST00000563184 ZSWIM6Q9HCJ5 1215 aa12.76□□□□□ -0.37
LINC00557-201ENST00000563184 ZNF710Q8N1W2 664 aa12.75□□□□□ -0.37
LINC00557-201ENST00000563184 TULP1O00294 542 aaPredicted RBP12.74□□□□□ -0.37
LINC00557-201ENST00000563184 MAP3K9P80192 1104 aa12.73□□□□□ -0.37
LINC00557-201ENST00000563184 HOXB1P14653 301 aaPredicted RBP12.71□□□□□ -0.37
LINC00557-201ENST00000563184 SMYD5Q6GMV2 418 aa12.71□□□□□ -0.37
LINC00557-201ENST00000563184 PTCD2Q8WV60 388 aaKnown RBP12.7□□□□□ -0.38
LINC00557-201ENST00000563184 SLC34A2O95436 690 aa12.69□□□□□ -0.38
LINC00557-201ENST00000563184 EMP3P54852 163 aa12.68□□□□□ -0.38
LINC00557-201ENST00000563184 ZC3H15Q8WU90 426 aaKnown RBP12.67□□□□□ -0.38
LINC00557-201ENST00000563184 RBM26Q5T8P6 1007 aaKnown RBP12.66□□□□□ -0.38
LINC00557-201ENST00000563184 MARVELD3Q96A59 401 aa12.66□□□□□ -0.38
LINC00557-201ENST00000563184 EVI5O60447 810 aa12.63□□□□□ -0.39
LINC00557-201ENST00000563184 GPR153Q6NV75 609 aa12.63□□□□□ -0.39
LINC00557-201ENST00000563184 TBC1D12O60347 775 aa12.62□□□□□ -0.39
LINC00557-201ENST00000563184 PTGER2P43116 358 aa12.62□□□□□ -0.39
LINC00557-201ENST00000563184 CDAN1Q8IWY9 1227 aa12.62□□□□□ -0.39
LINC00557-201ENST00000563184 GRXCR2A6NFK2 248 aa12.6□□□□□ -0.39
LINC00557-201ENST00000563184 ANO8Q9HCE9 1232 aaPredicted RBP12.59□□□□□ -0.39
LINC00557-201ENST00000563184 PCDHGA4Q9Y5G9 962 aa12.59□□□□□ -0.39
LINC00557-201ENST00000563184 DDX12PQ92771 950 aa12.58□□□□□ -0.4
LINC00557-201ENST00000563184 OSBPP22059 807 aa12.57□□□□□ -0.4
LINC00557-201ENST00000563184 HS3ST6Q96QI5 342 aa12.57□□□□□ -0.4
LINC00557-201ENST00000563184 FAM205CA6NFA0 338 aa12.56□□□□□ -0.4
LINC00557-201ENST00000563184 GPIHBP1Q8IV16 184 aa12.56□□□□□ -0.4
LINC00557-201ENST00000563184 KDM4FA0A1W2PPD8 638 aa12.55□□□□□ -0.4
LINC00557-201ENST00000563184 ZMYND10O75800 440 aa12.55□□□□□ -0.4
LINC00557-201ENST00000563184 PRIM1P49642 420 aaKnown RBP12.55□□□□□ -0.4
LINC00557-201ENST00000563184 ARSIQ5FYB1 569 aa12.54□□□□□ -0.4
LINC00557-201ENST00000563184 ERBB3P21860 1342 aa12.54□□□□□ -0.4
LINC00557-201ENST00000563184 GPR37O15354 613 aa12.53□□□□□ -0.4
LINC00557-201ENST00000563184 ZNF316A6NFI3 1004 aaPredicted RBP12.51□□□□□ -0.41
LINC00557-201ENST00000563184 BARGINQ6ZT62 677 aa12.51□□□□□ -0.41
LINC00557-201ENST00000563184 POTEB3A0JP26 581 aa12.5□□□□□ -0.41
LINC00557-201ENST00000563184 POTEBQ6S5H4 581 aa12.5□□□□□ -0.41
LINC00557-201ENST00000563184 KHSRPQ92945 711 aaKnown RBP eCLIP12.49□□□□□ -0.41
LINC00557-201ENST00000563184 SLC24A3Q9HC58 644 aa12.49□□□□□ -0.41
LINC00557-201ENST00000563184 VARS2Q5ST30 1063 aaKnown RBP12.47□□□□□ -0.41
LINC00557-201ENST00000563184 PHF14O94880 888 aa12.46□□□□□ -0.41
LINC00557-201ENST00000563184 NUTM2FA1L443 756 aa12.45□□□□□ -0.42
LINC00557-201ENST00000563184 NUDT7P0C024 238 aa12.45□□□□□ -0.42
LINC00557-201ENST00000563184 PCDHGA10Q9Y5H3 936 aa12.45□□□□□ -0.42
LINC00557-201ENST00000563184 ZNF687Q8N1G0 1237 aa12.43□□□□□ -0.42
LINC00557-201ENST00000563184 EPAS1Q99814 870 aa12.43□□□□□ -0.42
LINC00557-201ENST00000563184 PLSCR2Q9NRY7 297 aa12.42□□□□□ -0.42
LINC00557-201ENST00000563184 EN1Q05925 392 aaPredicted RBP12.41□□□□□ -0.42
LINC00557-201ENST00000563184 JPH4Q96JJ6 628 aa12.41□□□□□ -0.42
LINC00557-201ENST00000563184 PSDA5PKW4 1024 aaPredicted RBP12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms