RNA–Protein interactions for RNA: ENST00000562668.1

SMG1-206, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 3

Gene SMG1, Length 449 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-206ENST00000562668 EMP3P54852 163 aa12.62□□□□□ -0.39
SMG1-206ENST00000562668 ZNF710Q8N1W2 664 aa12.61□□□□□ -0.39
SMG1-206ENST00000562668 RIMBP2O15034 1052 aa12.6□□□□□ -0.39
SMG1-206ENST00000562668 KIF3CO14782 793 aa12.58□□□□□ -0.4
SMG1-206ENST00000562668 CDAN1Q8IWY9 1227 aa12.58□□□□□ -0.4
SMG1-206ENST00000562668 RYDENQ9NUL5 291 aaKnown RBP12.58□□□□□ -0.4
SMG1-206ENST00000562668 C2orf72A6NCS6 295 aa12.57□□□□□ -0.4
SMG1-206ENST00000562668 HOXB1P14653 301 aaPredicted RBP12.56□□□□□ -0.4
SMG1-206ENST00000562668 ZSWIM6Q9HCJ5 1215 aa12.55□□□□□ -0.4
SMG1-206ENST00000562668 PLSCR2Q9NRY7 297 aa12.55□□□□□ -0.4
SMG1-206ENST00000562668 AMER1Q5JTC6 1135 aaPredicted RBP12.54□□□□□ -0.4
SMG1-206ENST00000562668 TMC2Q8TDI7 906 aa12.54□□□□□ -0.4
SMG1-206ENST00000562668 FAM205CA6NFA0 338 aa12.5□□□□□ -0.41
SMG1-206ENST00000562668 HS3ST6Q96QI5 342 aa12.5□□□□□ -0.41
SMG1-206ENST00000562668 GPR153Q6NV75 609 aa12.47□□□□□ -0.41
SMG1-206ENST00000562668 POTEB3A0JP26 581 aa12.46□□□□□ -0.41
SMG1-206ENST00000562668 POTEBQ6S5H4 581 aa12.46□□□□□ -0.41
SMG1-206ENST00000562668 GTPBP6O43824 516 aaPredicted RBP12.45□□□□□ -0.42
SMG1-206ENST00000562668 RTN4Q9NQC3 1192 aaKnown RBP12.45□□□□□ -0.42
SMG1-206ENST00000562668 ERBB3P21860 1342 aa12.43□□□□□ -0.42
SMG1-206ENST00000562668 ARSIQ5FYB1 569 aa12.42□□□□□ -0.42
SMG1-206ENST00000562668 SLC34A2O95436 690 aa12.41□□□□□ -0.42
SMG1-206ENST00000562668 GPHNQ9NQX3 736 aaPredicted RBP12.41□□□□□ -0.42
SMG1-206ENST00000562668 FOXK1P85037 733 aa12.39□□□□□ -0.43
SMG1-206ENST00000562668 VARS2Q5ST30 1063 aaKnown RBP12.38□□□□□ -0.43
SMG1-206ENST00000562668 KHSRPQ92945 711 aaKnown RBP eCLIP12.38□□□□□ -0.432e-9■■■□□ 18.3
SMG1-206ENST00000562668 DSG2Q14126 1118 aa12.36□□□□□ -0.43
SMG1-206ENST00000562668 PLPP6Q8IY26 295 aa12.36□□□□□ -0.43
SMG1-206ENST00000562668 KRTAP3-3Q9BYR6 98 aa12.36□□□□□ -0.43
SMG1-206ENST00000562668 KRTAP3-2Q9BYR7 98 aa12.36□□□□□ -0.43
SMG1-206ENST00000562668 CRISPLD2Q9H0B8 497 aa12.36□□□□□ -0.43
SMG1-206ENST00000562668 PCDHGA4Q9Y5G9 962 aa12.36□□□□□ -0.43
SMG1-206ENST00000562668 NUDT7P0C024 238 aa12.33□□□□□ -0.44
SMG1-206ENST00000562668 ZNF316A6NFI3 1004 aaPredicted RBP12.32□□□□□ -0.44
SMG1-206ENST00000562668 BBXQ8WY36 941 aaPredicted RBP12.32□□□□□ -0.44
SMG1-206ENST00000562668 NCKAP5LQ9HCH0 1330 aa12.31□□□□□ -0.44
SMG1-206ENST00000562668 PTCD2Q8WV60 388 aaKnown RBP12.3□□□□□ -0.44
SMG1-206ENST00000562668 PPP1R15BQ5SWA1 713 aa12.28□□□□□ -0.44
SMG1-206ENST00000562668 ZNF687Q8N1G0 1237 aa12.28□□□□□ -0.44
SMG1-206ENST00000562668 PDE4AP27815 886 aa12.27□□□□□ -0.45
SMG1-206ENST00000562668 SPNS2Q8IVW8 549 aa12.27□□□□□ -0.45
SMG1-206ENST00000562668 LHX6Q9UPM6 363 aa12.25□□□□□ -0.45
SMG1-206ENST00000562668 KDM4FA0A1W2PPD8 638 aa12.22□□□□□ -0.45
SMG1-206ENST00000562668 TBC1D12O60347 775 aa12.21□□□□□ -0.45
SMG1-206ENST00000562668 MFSD10Q14728 455 aa12.21□□□□□ -0.45
SMG1-206ENST00000562668 CADPS2Q86UW7 1296 aa12.21□□□□□ -0.45
SMG1-206ENST00000562668 DDX27Q96GQ7 796 aaKnown RBP12.21□□□□□ -0.45
SMG1-206ENST00000562668 LARP6Q9BRS8 491 aaKnown RBP12.21□□□□□ -0.45
SMG1-206ENST00000562668 MMRN1Q13201 1228 aa12.2□□□□□ -0.46
SMG1-206ENST00000562668 OXER1Q8TDS5 423 aa12.2□□□□□ -0.46
SMG1-206ENST00000562668 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.2□□□□□ -0.46
SMG1-206ENST00000562668 UPF1Q92900 1129 aaKnown RBP eCLIP12.19□□□□□ -0.46
SMG1-206ENST00000562668 PSDA5PKW4 1024 aaPredicted RBP12.17□□□□□ -0.46
SMG1-206ENST00000562668 SPRYD3Q8NCJ5 442 aa12.16□□□□□ -0.46
SMG1-206ENST00000562668 PBX2P40425 430 aa12.15□□□□□ -0.46
SMG1-206ENST00000562668 LSM11P83369 360 aaKnown RBP eCLIP12.1□□□□□ -0.47
SMG1-206ENST00000562668 PPP4R3BQ5MIZ7 849 aa12.09□□□□□ -0.47
SMG1-206ENST00000562668 POTEEQ6S8J3 1075 aa12.09□□□□□ -0.47
SMG1-206ENST00000562668 PAXIP1Q6ZW49 1069 aaPredicted RBP12.09□□□□□ -0.47
SMG1-206ENST00000562668 CFAP44Q96MT7 982 aa12.08□□□□□ -0.48
SMG1-206ENST00000562668 EMILIN3Q9NT22 766 aa12.07□□□□□ -0.48
SMG1-206ENST00000562668 AXIN2Q9Y2T1 843 aa12.07□□□□□ -0.48
SMG1-206ENST00000562668 ANKRD13DQ6ZTN6 518 aa12.06□□□□□ -0.48
SMG1-206ENST00000562668 PTGER2P43116 358 aa12.05□□□□□ -0.48
SMG1-206ENST00000562668 EVI5O60447 810 aa12.04□□□□□ -0.48
SMG1-206ENST00000562668 ARHGAP33O14559 1287 aa12.03□□□□□ -0.48
SMG1-206ENST00000562668 MAP3K9P80192 1104 aa12.03□□□□□ -0.48
SMG1-206ENST00000562668 CAMK2BQ13554 666 aa12.03□□□□□ -0.48
SMG1-206ENST00000562668 ZNF454Q8N9F8 522 aa12.02□□□□□ -0.49
SMG1-206ENST00000562668 MYT1LQ9UL68 1186 aa12.02□□□□□ -0.49
SMG1-206ENST00000562668 ANO8Q9HCE9 1232 aaPredicted RBP12.01□□□□□ -0.49
SMG1-206ENST00000562668 FOSBP53539 338 aa12□□□□□ -0.49
SMG1-206ENST00000562668 RNF166Q96A37 237 aaPredicted RBP12□□□□□ -0.49
SMG1-206ENST00000562668 JPH4Q96JJ6 628 aa12□□□□□ -0.49
SMG1-206ENST00000562668 PSEN2P49810 448 aa11.98□□□□□ -0.49
SMG1-206ENST00000562668 KCNH8Q96L42 1107 aa11.97□□□□□ -0.49
SMG1-206ENST00000562668 KCNK17Q96T54 332 aa11.97□□□□□ -0.49
SMG1-206ENST00000562668 DMRTA1Q5VZB9 504 aa11.96□□□□□ -0.49
SMG1-206ENST00000562668 BCL2L12Q9HB09 334 aa11.96□□□□□ -0.49
SMG1-206ENST00000562668 ADGRD1Q6QNK2 874 aa11.95□□□□□ -0.5
SMG1-206ENST00000562668 DPYSL4O14531 572 aa11.94□□□□□ -0.5
SMG1-206ENST00000562668 TK2O00142 265 aa11.93□□□□□ -0.5
SMG1-206ENST00000562668 ZDHHC16Q969W1 377 aa11.91□□□□□ -0.5
SMG1-206ENST00000562668 PTPREP23469 700 aa11.89□□□□□ -0.51
SMG1-206ENST00000562668 ADAM33Q9BZ11 813 aa11.89□□□□□ -0.51
SMG1-206ENST00000562668 PCDHGA10Q9Y5H3 936 aa11.88□□□□□ -0.51
SMG1-206ENST00000562668 HRO43593 1189 aa11.87□□□□□ -0.51
SMG1-206ENST00000562668 WDR70Q9NW82 654 aa11.87□□□□□ -0.51
SMG1-206ENST00000562668 PHF14O94880 888 aa11.86□□□□□ -0.51
SMG1-206ENST00000562668 E2F4Q16254 413 aa11.86□□□□□ -0.51
SMG1-206ENST00000562668 TYW1BQ6NUM6 668 aa11.85□□□□□ -0.51
SMG1-206ENST00000562668 PDIA6Q15084 440 aa11.84□□□□□ -0.51
SMG1-206ENST00000562668 FBXW7Q969H0 707 aa11.84□□□□□ -0.51
SMG1-206ENST00000562668 SLC4A5Q9BY07 1137 aa11.84□□□□□ -0.51
SMG1-206ENST00000562668 VPS9D1Q9Y2B5 631 aa11.84□□□□□ -0.51
SMG1-206ENST00000562668 EPAS1Q99814 870 aa11.81□□□□□ -0.52
SMG1-206ENST00000562668 ZBED2Q9BTP6 218 aa11.81□□□□□ -0.52
SMG1-206ENST00000562668 TSHZ2Q9NRE2 1034 aa11.81□□□□□ -0.52
SMG1-206ENST00000562668 ARIH1Q9Y4X5 557 aaPredicted RBP11.81□□□□□ -0.52
SMG1-206ENST00000562668 SPDYE16A6NNV3 312 aaPredicted RBP11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms