RNA–Protein interactions for RNA: ENST00000561940.1

SMG1-204, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 964 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-204ENST00000561940 TMEM92Q6UXU6 159 aa15.51■□□□□ 0.07
SMG1-204ENST00000561940 PLSCR2Q9NRY7 297 aa15.51■□□□□ 0.07
SMG1-204ENST00000561940 CADPS2Q86UW7 1296 aa15.48■□□□□ 0.07
SMG1-204ENST00000561940 TSHZ2Q9NRE2 1034 aa15.45■□□□□ 0.06
SMG1-204ENST00000561940 C2orf72A6NCS6 295 aa15.42■□□□□ 0.06
SMG1-204ENST00000561940 TMC2Q8TDI7 906 aa15.42■□□□□ 0.06
SMG1-204ENST00000561940 HAP1P54257 671 aaPredicted RBP15.39■□□□□ 0.05
SMG1-204ENST00000561940 NCKAP5LQ9HCH0 1330 aa15.36■□□□□ 0.05
SMG1-204ENST00000561940 KIF3CO14782 793 aa15.35■□□□□ 0.05
SMG1-204ENST00000561940 PDE4AP27815 886 aa15.34■□□□□ 0.05
SMG1-204ENST00000561940 LARP6Q9BRS8 491 aaKnown RBP15.34■□□□□ 0.05
SMG1-204ENST00000561940 GPHNQ9NQX3 736 aaPredicted RBP15.34■□□□□ 0.05
SMG1-204ENST00000561940 CRISPLD2Q9H0B8 497 aa15.32■□□□□ 0.04
SMG1-204ENST00000561940 DSG2Q14126 1118 aa15.29■□□□□ 0.04
SMG1-204ENST00000561940 PLPP6Q8IY26 295 aa15.26■□□□□ 0.03
SMG1-204ENST00000561940 FAM163AQ96GL9 167 aaPredicted RBP15.25■□□□□ 0.03
SMG1-204ENST00000561940 FOXK1P85037 733 aa15.24■□□□□ 0.03
SMG1-204ENST00000561940 PPP1R15BQ5SWA1 713 aa15.23■□□□□ 0.03
SMG1-204ENST00000561940 DDX27Q96GQ7 796 aaKnown RBP15.23■□□□□ 0.03
SMG1-204ENST00000561940 HOXB3P14651 431 aaPredicted RBP15.21■□□□□ 0.03
SMG1-204ENST00000561940 SNPHO15079 494 aa15.2■□□□□ 0.02
SMG1-204ENST00000561940 MFSD10Q14728 455 aa15.18■□□□□ 0.02
SMG1-204ENST00000561940 WDR70Q9NW82 654 aa15.18■□□□□ 0.02
SMG1-204ENST00000561940 DOK7Q18PE1 504 aa15.16■□□□□ 0.02
SMG1-204ENST00000561940 ZNF710Q8N1W2 664 aa15.15■□□□□ 0.02
SMG1-204ENST00000561940 ST18O60284 1047 aa15.13■□□□□ 0.01
SMG1-204ENST00000561940 UPF1Q92900 1129 aaKnown RBP eCLIP15.11■□□□□ 0.01
SMG1-204ENST00000561940 KDM2AQ9Y2K7 1162 aa15.1■□□□□ 0.01
SMG1-204ENST00000561940 ARSIQ5FYB1 569 aa15.09■□□□□ 0.01
SMG1-204ENST00000561940 KHSRPQ92945 711 aaKnown RBP eCLIP15.09■□□□□ 0.01
SMG1-204ENST00000561940 RIMBP2O15034 1052 aa15.08■□□□□ 0
SMG1-204ENST00000561940 LCE2DQ5TA82 110 aaPredicted RBP15.07■□□□□ 0
SMG1-204ENST00000561940 PCDHGA4Q9Y5G9 962 aa15.05■□□□□ -0
SMG1-204ENST00000561940 SLC34A2O95436 690 aa15.04■□□□□ -0
SMG1-204ENST00000561940 MARVELD3Q96A59 401 aa15.04■□□□□ -0
SMG1-204ENST00000561940 EMILIN3Q9NT22 766 aa15.04■□□□□ -0
SMG1-204ENST00000561940 E2F4Q16254 413 aa15.03■□□□□ -0
SMG1-204ENST00000561940 GPR153Q6NV75 609 aa15.03■□□□□ -0
SMG1-204ENST00000561940 VSIG10Q8N0Z9 540 aa15.02■□□□□ -0
SMG1-204ENST00000561940 PTCD2Q8WV60 388 aaKnown RBP15.01□□□□□ -0.01
SMG1-204ENST00000561940 OXER1Q8TDS5 423 aa15□□□□□ -0.01
SMG1-204ENST00000561940 NUDT7P0C024 238 aa14.99□□□□□ -0.01
SMG1-204ENST00000561940 CAMK2BQ13554 666 aa14.99□□□□□ -0.01
SMG1-204ENST00000561940 ZSWIM6Q9HCJ5 1215 aa14.99□□□□□ -0.01
SMG1-204ENST00000561940 HOXB1P14653 301 aaPredicted RBP14.98□□□□□ -0.01
SMG1-204ENST00000561940 MAP3K9P80192 1104 aa14.98□□□□□ -0.01
SMG1-204ENST00000561940 TBC1D12O60347 775 aa14.97□□□□□ -0.01
SMG1-204ENST00000561940 DPYSL4O14531 572 aa14.95□□□□□ -0.02
SMG1-204ENST00000561940 EMP3P54852 163 aa14.93□□□□□ -0.02
SMG1-204ENST00000561940 KCNV2Q8TDN2 545 aa14.91□□□□□ -0.02
SMG1-204ENST00000561940 FAM205CA6NFA0 338 aa14.89□□□□□ -0.03
SMG1-204ENST00000561940 EVI5O60447 810 aa14.88□□□□□ -0.03
SMG1-204ENST00000561940 POTEMA6NI47 508 aa14.87□□□□□ -0.03
SMG1-204ENST00000561940 POTEGQ6S5H5 508 aa14.87□□□□□ -0.03
SMG1-204ENST00000561940 ERBB3P21860 1342 aa14.87□□□□□ -0.03
SMG1-204ENST00000561940 LHX6Q9UPM6 363 aa14.86□□□□□ -0.03
SMG1-204ENST00000561940 KDM4FA0A1W2PPD8 638 aa14.84□□□□□ -0.03
SMG1-204ENST00000561940 ZNF316A6NFI3 1004 aaPredicted RBP14.83□□□□□ -0.04
SMG1-204ENST00000561940 PCDH10Q9P2E7 1040 aa14.83□□□□□ -0.04
SMG1-204ENST00000561940 POTEB3A0JP26 581 aa14.82□□□□□ -0.04
SMG1-204ENST00000561940 VARS2Q5ST30 1063 aaKnown RBP14.82□□□□□ -0.04
SMG1-204ENST00000561940 POTEBQ6S5H4 581 aa14.82□□□□□ -0.04
SMG1-204ENST00000561940 P3H3Q8IVL6 736 aa14.8□□□□□ -0.04
SMG1-204ENST00000561940 HS3ST6Q96QI5 342 aa14.8□□□□□ -0.04
SMG1-204ENST00000561940 ARHGEF1Q92888 912 aaKnown RBP14.79□□□□□ -0.04
SMG1-204ENST00000561940 ANO8Q9HCE9 1232 aaPredicted RBP14.77□□□□□ -0.05
SMG1-204ENST00000561940 ARIH1Q9Y4X5 557 aaPredicted RBP14.77□□□□□ -0.05
SMG1-204ENST00000561940 PDIA6Q15084 440 aa14.74□□□□□ -0.05
SMG1-204ENST00000561940 DDX12PQ92771 950 aa14.74□□□□□ -0.05
SMG1-204ENST00000561940 SPDYE16A6NNV3 312 aaPredicted RBP14.73□□□□□ -0.05
SMG1-204ENST00000561940 ZNF454Q8N9F8 522 aa14.73□□□□□ -0.05
SMG1-204ENST00000561940 GRXCR2A6NFK2 248 aa14.69□□□□□ -0.06
SMG1-204ENST00000561940 SEMA3EO15041 775 aa14.67□□□□□ -0.06
SMG1-204ENST00000561940 FOSBP53539 338 aa14.66□□□□□ -0.06
SMG1-204ENST00000561940 CDAN1Q8IWY9 1227 aa14.66□□□□□ -0.06
SMG1-204ENST00000561940 PCDHGA10Q9Y5H3 936 aa14.66□□□□□ -0.06
SMG1-204ENST00000561940 PPP4R3BQ5MIZ7 849 aa14.65□□□□□ -0.06
SMG1-204ENST00000561940 PSDA5PKW4 1024 aaPredicted RBP14.64□□□□□ -0.07
SMG1-204ENST00000561940 MLLT3P42568 568 aaPredicted RBP14.64□□□□□ -0.07
SMG1-204ENST00000561940 JPH4Q96JJ6 628 aa14.64□□□□□ -0.07
SMG1-204ENST00000561940 PTGER2P43116 358 aa14.63□□□□□ -0.07
SMG1-204ENST00000561940 ZNF687Q8N1G0 1237 aa14.63□□□□□ -0.07
SMG1-204ENST00000561940 AXIN2Q9Y2T1 843 aa14.63□□□□□ -0.07
SMG1-204ENST00000561940 PHF14O94880 888 aa14.61□□□□□ -0.07
SMG1-204ENST00000561940 NBR1Q14596 966 aa14.61□□□□□ -0.07
SMG1-204ENST00000561940 ZDHHC16Q969W1 377 aa14.61□□□□□ -0.07
SMG1-204ENST00000561940 RBM33Q96EV2 1170 aaKnown RBP14.61□□□□□ -0.07
SMG1-204ENST00000561940 BCANQ96GW7 911 aa14.61□□□□□ -0.07
SMG1-204ENST00000561940 ADAM33Q9BZ11 813 aa14.59□□□□□ -0.07
SMG1-204ENST00000561940 TYW1BQ6NUM6 668 aa14.58□□□□□ -0.08
SMG1-204ENST00000561940 POTEEQ6S8J3 1075 aa14.58□□□□□ -0.08
SMG1-204ENST00000561940 EPAS1Q99814 870 aa14.56□□□□□ -0.08
SMG1-204ENST00000561940 PRIM1P49642 420 aaKnown RBP14.55□□□□□ -0.08
SMG1-204ENST00000561940 PSEN2P49810 448 aa14.55□□□□□ -0.08
SMG1-204ENST00000561940 OSBPP22059 807 aa14.54□□□□□ -0.08
SMG1-204ENST00000561940 KCNK17Q96T54 332 aa14.54□□□□□ -0.08
SMG1-204ENST00000561940 TESPA1A2RU30 521 aaPredicted RBP14.52□□□□□ -0.09
SMG1-204ENST00000561940 FBXW7Q969H0 707 aa14.52□□□□□ -0.09
SMG1-204ENST00000561940 KRTAP3-3Q9BYR6 98 aa14.52□□□□□ -0.09
SMG1-204ENST00000561940 KRTAP3-2Q9BYR7 98 aa14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms