RNA–Protein interactions for RNA: ENST00000561266.5

TPM1-230, Transcript of tropomyosin 1, humanhuman

TSL 3

Gene TPM1, Length 671 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-230ENST00000561266 EHBP1L1Q8N3D4 1523 aa22.07■■□□□ 1.12
TPM1-230ENST00000561266 GPATCH8Q9UKJ3 1502 aaKnown RBP22.07■■□□□ 1.12
TPM1-230ENST00000561266 EFCAB2Q5VUJ9 269 aa22.07■■□□□ 1.12
TPM1-230ENST00000561266 KANK4Q5T7N3 995 aaPredicted RBP22.06■■□□□ 1.12
TPM1-230ENST00000561266 DENND4BO75064 1496 aaPredicted RBP22.06■■□□□ 1.12
TPM1-230ENST00000561266 ADGRL1O94910 1474 aa22.06■■□□□ 1.12
TPM1-230ENST00000561266 SCAPERQ9BY12 1400 aa22.06■■□□□ 1.12
TPM1-230ENST00000561266 ARHGEF12Q9NZN5 1544 aa22.03■■□□□ 1.12
TPM1-230ENST00000561266 LRRC9Q6ZRR7 1453 aa22.03■■□□□ 1.12
TPM1-230ENST00000561266 MAP3K1Q13233 1512 aa22.01■■□□□ 1.11
TPM1-230ENST00000561266 SAMD9LQ8IVG5 1584 aa22■■□□□ 1.11
TPM1-230ENST00000561266 POGZQ7Z3K3 1410 aa21.99■■□□□ 1.11
TPM1-230ENST00000561266 NCOA2Q15596 1464 aa21.99■■□□□ 1.11
TPM1-230ENST00000561266 SUPT6HQ7KZ85 1726 aaKnown RBP21.99■■□□□ 1.11
TPM1-230ENST00000561266 CCNB3Q8WWL7 1395 aa21.99■■□□□ 1.11
TPM1-230ENST00000561266 ABCC1P33527 1531 aa21.98■■□□□ 1.11
TPM1-230ENST00000561266 KDM4FA0A1W2PPD8 638 aa21.98■■□□□ 1.11
TPM1-230ENST00000561266 ITSN2Q9NZM3 1697 aa21.97■■□□□ 1.11
TPM1-230ENST00000561266 ZMYM4Q5VZL5 1548 aa21.96■■□□□ 1.11
TPM1-230ENST00000561266 AFAP1Q8N556 730 aa21.96■■□□□ 1.11
TPM1-230ENST00000561266 ZNF777Q9ULD5 760 aaPredicted RBP21.96■■□□□ 1.11
TPM1-230ENST00000561266 TRAPPC8Q9Y2L5 1435 aa21.96■■□□□ 1.11
TPM1-230ENST00000561266 YEATS2Q9ULM3 1422 aa21.95■■□□□ 1.1
TPM1-230ENST00000561266 ZNF644Q9H582 1327 aaPredicted RBP21.94■■□□□ 1.1
TPM1-230ENST00000561266 SIGLEC1Q9BZZ2 1709 aa21.94■■□□□ 1.1
TPM1-230ENST00000561266 CFDP1Q9UEE9 299 aaPredicted RBP21.93■■□□□ 1.1
TPM1-230ENST00000561266 ARHGEF40Q8TER5 1519 aa21.92■■□□□ 1.1
TPM1-230ENST00000561266 KDM5CP41229 1560 aa21.91■■□□□ 1.1
TPM1-230ENST00000561266 SYCP2Q9BX26 1530 aa21.91■■□□□ 1.1
TPM1-230ENST00000561266 HNRNPMP52272 730 aaKnown RBP eCLIP21.9■■□□□ 1.1
TPM1-230ENST00000561266 ZFYVE16Q7Z3T8 1539 aa21.89■■□□□ 1.09
TPM1-230ENST00000561266 ZNF518AQ6AHZ1 1483 aa21.89■■□□□ 1.09
TPM1-230ENST00000561266 MAGI2Q86UL8 1455 aa21.85■■□□□ 1.09
TPM1-230ENST00000561266 KIDINS220Q9ULH0 1771 aa21.84■■□□□ 1.09
TPM1-230ENST00000561266 HECW2Q9P2P5 1572 aa21.84■■□□□ 1.09
TPM1-230ENST00000561266 APLP2Q06481 763 aa21.84■■□□□ 1.09
TPM1-230ENST00000561266 MBD5Q9P267 1494 aa21.83■■□□□ 1.09
TPM1-230ENST00000561266 KIAA1107Q9UPP5 1409 aa21.83■■□□□ 1.09
TPM1-230ENST00000561266 ABCA6Q8N139 1617 aa21.82■■□□□ 1.08
TPM1-230ENST00000561266 CAMSAP2Q08AD1 1489 aa21.81■■□□□ 1.08
TPM1-230ENST00000561266 MLH3Q9UHC1 1453 aa21.81■■□□□ 1.08
TPM1-230ENST00000561266 DIP2CQ9Y2E4 1556 aa21.81■■□□□ 1.08
TPM1-230ENST00000561266 PLEKHH2Q8IVE3 1493 aa21.8■■□□□ 1.08
TPM1-230ENST00000561266 ATP10AO60312 1499 aa21.79■■□□□ 1.08
TPM1-230ENST00000561266 MYOM3Q5VTT5 1437 aa21.79■■□□□ 1.08
TPM1-230ENST00000561266 BCORL1Q5H9F3 1711 aa21.78■■□□□ 1.08
TPM1-230ENST00000561266 ADAMTSL3P82987 1691 aa21.77■■□□□ 1.08
TPM1-230ENST00000561266 AEBP2Q6ZN18 517 aaPredicted RBP21.77■■□□□ 1.08
TPM1-230ENST00000561266 INO80Q9ULG1 1556 aaPredicted RBP21.75■■□□□ 1.07
TPM1-230ENST00000561266 MYT1LQ9UL68 1186 aa21.75■■□□□ 1.07
TPM1-230ENST00000561266 ARID4BQ4LE39 1312 aaPredicted RBP21.75■■□□□ 1.07
TPM1-230ENST00000561266 C9orf84Q5VXU9 1444 aa21.74■■□□□ 1.07
TPM1-230ENST00000561266 PPARGC1BQ86YN6 1023 aaKnown RBP21.74■■□□□ 1.07
TPM1-230ENST00000561266 SPAG9O60271 1321 aaKnown RBP21.74■■□□□ 1.07
TPM1-230ENST00000561266 ATP7AQ04656 1500 aa21.73■■□□□ 1.07
TPM1-230ENST00000561266 MIA2Q96PC5 1412 aa21.72■■□□□ 1.07
TPM1-230ENST00000561266 MADDQ8WXG6 1647 aa21.7■■□□□ 1.06
TPM1-230ENST00000561266 ARHGEF5Q12774 1597 aa21.7■■□□□ 1.06
TPM1-230ENST00000561266 PTPN23Q9H3S7 1636 aa21.69■■□□□ 1.06
TPM1-230ENST00000561266 MLECQ14165 292 aa21.69■■□□□ 1.06
TPM1-230ENST00000561266 CCDC141Q6ZP82 1450 aa21.69■■□□□ 1.06
TPM1-230ENST00000561266 REREQ9P2R6 1566 aa21.69■■□□□ 1.06
TPM1-230ENST00000561266 FGD6Q6ZV73 1430 aa21.67■■□□□ 1.06
TPM1-230ENST00000561266 RIMS1Q86UR5 1692 aaKnown RBP21.65■■□□□ 1.06
TPM1-230ENST00000561266 ADGBQ8N7X0 1667 aa21.65■■□□□ 1.06
TPM1-230ENST00000561266 TCOF1Q13428 1488 aaKnown RBP21.64■■□□□ 1.05
TPM1-230ENST00000561266 AGLP35573 1532 aa21.63■■□□□ 1.05
TPM1-230ENST00000561266 RTEL1-TNFRSF6BF6WH68 1400 aa21.63■■□□□ 1.05
TPM1-230ENST00000561266 PLXNC1O60486 1568 aa21.61■■□□□ 1.05
TPM1-230ENST00000561266 FER1L4A9Z1Z3 1794 aa21.61■■□□□ 1.05
TPM1-230ENST00000561266 A2MP01023 1474 aa21.61■■□□□ 1.05
TPM1-230ENST00000561266 PTPRMP28827 1452 aa21.61■■□□□ 1.05
TPM1-230ENST00000561266 RSPH4AQ5TD94 716 aa21.61■■□□□ 1.05
TPM1-230ENST00000561266 ABCC5O15440 1437 aa21.6■■□□□ 1.05
TPM1-230ENST00000561266 MAST1Q9Y2H9 1570 aa21.58■■□□□ 1.05
TPM1-230ENST00000561266 CROCC2H7BZ55 1655 aa21.58■■□□□ 1.05
TPM1-230ENST00000561266 DNMT1P26358 1616 aaKnown RBP21.57■■□□□ 1.04
TPM1-230ENST00000561266 TSPY4P0CV99 314 aa21.55■■□□□ 1.04
TPM1-230ENST00000561266 TSPY10P0CW01 314 aa21.55■■□□□ 1.04
TPM1-230ENST00000561266 DAPK1P53355 1430 aa21.55■■□□□ 1.04
TPM1-230ENST00000561266 DHX29Q7Z478 1369 aaKnown RBP21.54■■□□□ 1.04
TPM1-230ENST00000561266 FAM50AQ14320 339 aaKnown RBP21.51■■□□□ 1.03
TPM1-230ENST00000561266 PLPPR3Q6T4P5 718 aa21.51■■□□□ 1.03
TPM1-230ENST00000561266 CEBPAP49715 358 aaPredicted RBP21.5■■□□□ 1.03
TPM1-230ENST00000561266 CHIC2Q9UKJ5 165 aa21.49■■□□□ 1.03
TPM1-230ENST00000561266 SHANK2Q9UPX8 1470 aa21.48■■□□□ 1.03
TPM1-230ENST00000561266 PTPRKQ15262 1439 aa21.47■■□□□ 1.03
TPM1-230ENST00000561266 GGT6Q6P531 493 aa21.47■■□□□ 1.03
TPM1-230ENST00000561266 C3P01024 1663 aa21.46■■□□□ 1.03
TPM1-230ENST00000561266 CLTCQ00610 1675 aaKnown RBP21.45■■□□□ 1.02
TPM1-230ENST00000561266 KIF3BO15066 747 aa21.45■■□□□ 1.02
TPM1-230ENST00000561266 RRP7BPQ9NSQ0 103 aa21.44■■□□□ 1.02
TPM1-230ENST00000561266 KIF15Q9NS87 1388 aa21.41■■□□□ 1.02
TPM1-230ENST00000561266 DUOX2Q9NRD8 1548 aa21.4■■□□□ 1.02
TPM1-230ENST00000561266 NCOA1Q15788 1441 aa21.4■■□□□ 1.02
TPM1-230ENST00000561266 MROH1Q8NDA8 1641 aa21.4■■□□□ 1.02
TPM1-230ENST00000561266 MROH2AA6NES4 1674 aa21.39■■□□□ 1.01
TPM1-230ENST00000561266 ADGRL2O95490 1459 aa21.39■■□□□ 1.01
TPM1-230ENST00000561266 RNF17Q9BXT8 1623 aaKnown RBP21.38■■□□□ 1.01
TPM1-230ENST00000561266 RRBP1Q9P2E9 1410 aaKnown RBP21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms