RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 SENP3-EIF4A1A0A087X0R7 540 aa7.67□□□□□ -1.18
VPS13C-209ENST00000560637 NUP155O75694 1391 aa7.67□□□□□ -1.18
VPS13C-209ENST00000560637 DIEXFQ68CQ4 756 aaKnown RBP7.66□□□□□ -1.18
VPS13C-209ENST00000560637 C14orf37Q86TY3 774 aa7.66□□□□□ -1.18
VPS13C-209ENST00000560637 WASHC2CQ9Y4E1 1318 aa7.66□□□□□ -1.18
VPS13C-209ENST00000560637 IQGAP2Q13576 1575 aa7.65□□□□□ -1.18
VPS13C-209ENST00000560637 MAPKBP1O60336 1514 aa7.65□□□□□ -1.18
VPS13C-209ENST00000560637 RAB3GAP2Q9H2M9 1393 aa7.65□□□□□ -1.18
VPS13C-209ENST00000560637 DCAF11Q8TEB1 546 aa7.65□□□□□ -1.18
VPS13C-209ENST00000560637 DDX10Q13206 875 aaKnown RBP7.65□□□□□ -1.19
VPS13C-209ENST00000560637 UACAQ9BZF9 1416 aa7.64□□□□□ -1.19
VPS13C-209ENST00000560637 SCAF1Q9H7N4 1312 aaKnown RBP7.64□□□□□ -1.19
VPS13C-209ENST00000560637 MPHOSPH9Q99550 1183 aa7.63□□□□□ -1.19
VPS13C-209ENST00000560637 CASKIN1Q8WXD9 1431 aa7.63□□□□□ -1.19
VPS13C-209ENST00000560637 STK26Q9P289 416 aa7.63□□□□□ -1.19
VPS13C-209ENST00000560637 ANKRD30AQ9BXX3 1397 aa7.62□□□□□ -1.19
VPS13C-209ENST00000560637 NCOA2Q15596 1464 aa7.61□□□□□ -1.19
VPS13C-209ENST00000560637 LRRC9Q6ZRR7 1453 aa7.61□□□□□ -1.19
VPS13C-209ENST00000560637 SCAPERQ9BY12 1400 aa7.61□□□□□ -1.19
VPS13C-209ENST00000560637 SETD5Q9C0A6 1442 aa7.61□□□□□ -1.19
VPS13C-209ENST00000560637 ZNF316A6NFI3 1004 aaPredicted RBP7.6□□□□□ -1.19
VPS13C-209ENST00000560637 NUTM2FA1L443 756 aa7.6□□□□□ -1.19
VPS13C-209ENST00000560637 TMC1Q8TDI8 760 aa7.6□□□□□ -1.19
VPS13C-209ENST00000560637 ZBTB7CA1YPR0 619 aa7.59□□□□□ -1.19
VPS13C-209ENST00000560637 EPRSP07814 1512 aaKnown RBP7.59□□□□□ -1.19
VPS13C-209ENST00000560637 ARHGAP5Q13017 1502 aa7.59□□□□□ -1.19
VPS13C-209ENST00000560637 UHRF1BP1LA0JNW5 1464 aa7.59□□□□□ -1.19
VPS13C-209ENST00000560637 FGD6Q6ZV73 1430 aa7.59□□□□□ -1.19
VPS13C-209ENST00000560637 PRKCSHP14314 528 aaPredicted RBP7.58□□□□□ -1.2
VPS13C-209ENST00000560637 CARD11Q9BXL7 1154 aa7.58□□□□□ -1.2
VPS13C-209ENST00000560637 KANK1Q14678 1352 aa7.58□□□□□ -1.2
VPS13C-209ENST00000560637 ABCC10Q5T3U5 1492 aa7.58□□□□□ -1.2
VPS13C-209ENST00000560637 TROQ12816 1431 aaPredicted RBP7.58□□□□□ -1.2
VPS13C-209ENST00000560637 MYOM3Q5VTT5 1437 aa7.58□□□□□ -1.2
VPS13C-209ENST00000560637 NCBP3Q53F19 620 aaKnown RBP7.58□□□□□ -1.2
VPS13C-209ENST00000560637 LMOD2Q6P5Q4 547 aa7.58□□□□□ -1.2
VPS13C-209ENST00000560637 SALL2Q9Y467 1007 aaPredicted RBP7.58□□□□□ -1.2
VPS13C-209ENST00000560637 GLI2P10070 1586 aa7.57□□□□□ -1.2
VPS13C-209ENST00000560637 KIF15Q9NS87 1388 aa7.57□□□□□ -1.2
VPS13C-209ENST00000560637 PCF11O94913 1555 aaKnown RBP7.57□□□□□ -1.2
VPS13C-209ENST00000560637 CD109Q6YHK3 1445 aa7.56□□□□□ -1.2
VPS13C-209ENST00000560637 FYCO1Q9BQS8 1478 aa7.56□□□□□ -1.2
VPS13C-209ENST00000560637 ZBTB22O15209 634 aa7.56□□□□□ -1.2
VPS13C-209ENST00000560637 SOX12O15370 315 aa7.56□□□□□ -1.2
VPS13C-209ENST00000560637 CEBPAP49715 358 aaPredicted RBP7.56□□□□□ -1.2
VPS13C-209ENST00000560637 POGKQ9P215 609 aa7.55□□□□□ -1.2
VPS13C-209ENST00000560637 KIF13AQ9H1H9 1805 aa7.55□□□□□ -1.2
VPS13C-209ENST00000560637 RSPH4AQ5TD94 716 aa7.55□□□□□ -1.2
VPS13C-209ENST00000560637 L3MBTL2Q969R5 705 aa7.55□□□□□ -1.2
VPS13C-209ENST00000560637 EFCAB5A4FU69 1503 aa7.55□□□□□ -1.2
VPS13C-209ENST00000560637 DIP2BQ9P265 1576 aa7.55□□□□□ -1.2
VPS13C-209ENST00000560637 ATP10BO94823 1461 aa7.54□□□□□ -1.2
VPS13C-209ENST00000560637 UGGT2Q9NYU1 1516 aa7.54□□□□□ -1.2
VPS13C-209ENST00000560637 ANP32CO43423 234 aa7.54□□□□□ -1.2
VPS13C-209ENST00000560637 TNNT2P45379 298 aaPredicted RBP7.54□□□□□ -1.2
VPS13C-209ENST00000560637 EIF4G2P78344 907 aaKnown RBP eCLIP7.54□□□□□ -1.2
VPS13C-209ENST00000560637 ERCC6L2Q5T890 1561 aa7.54□□□□□ -1.2
VPS13C-209ENST00000560637 ASXL2Q76L83 1435 aa7.53□□□□□ -1.2
VPS13C-209ENST00000560637 TEX14Q8IWB6 1497 aa7.53□□□□□ -1.2
VPS13C-209ENST00000560637 ABCC2Q92887 1545 aa7.52□□□□□ -1.2
VPS13C-209ENST00000560637 ADCY10Q96PN6 1610 aa7.52□□□□□ -1.2
VPS13C-209ENST00000560637 NUP153P49790 1475 aaKnown RBP7.52□□□□□ -1.21
VPS13C-209ENST00000560637 DISP1Q96F81 1524 aa7.52□□□□□ -1.21
VPS13C-209ENST00000560637 PPM1GO15355 546 aaPredicted RBP7.51□□□□□ -1.21
VPS13C-209ENST00000560637 TRAK1Q9UPV9 953 aa7.51□□□□□ -1.21
VPS13C-209ENST00000560637 A0A0G2JS52 829 aa7.51□□□□□ -1.21
VPS13C-209ENST00000560637 ANKRD50Q9ULJ7 1429 aa7.51□□□□□ -1.21
VPS13C-209ENST00000560637 TIAM1Q13009 1591 aa7.51□□□□□ -1.21
VPS13C-209ENST00000560637 CENPBP07199 599 aaPredicted RBP7.5□□□□□ -1.21
VPS13C-209ENST00000560637 FAM9BQ8IZU0 186 aa7.5□□□□□ -1.21
VPS13C-209ENST00000560637 KDM6BO15054 1643 aa7.5□□□□□ -1.21
VPS13C-209ENST00000560637 CTTNBP2Q8WZ74 1663 aa7.5□□□□□ -1.21
VPS13C-209ENST00000560637 FBXO31Q5XUX0 539 aaPredicted RBP7.5□□□□□ -1.21
VPS13C-209ENST00000560637 HECW1Q76N89 1606 aa7.5□□□□□ -1.21
VPS13C-209ENST00000560637 SRPK2P78362 688 aaKnown RBP7.49□□□□□ -1.21
VPS13C-209ENST00000560637 BCL11AQ9H165 835 aa7.49□□□□□ -1.21
VPS13C-209ENST00000560637 C9orf84Q5VXU9 1444 aa7.49□□□□□ -1.21
VPS13C-209ENST00000560637 TMEM132EQ6IEE7 984 aa7.49□□□□□ -1.21
VPS13C-209ENST00000560637 DHX57Q6P158 1386 aaKnown RBP7.49□□□□□ -1.21
VPS13C-209ENST00000560637 RBM33Q96EV2 1170 aaKnown RBP7.48□□□□□ -1.21
VPS13C-209ENST00000560637 KDM5BQ9UGL1 1544 aa7.48□□□□□ -1.21
VPS13C-209ENST00000560637 KIAA0556O60303 1618 aa7.47□□□□□ -1.21
VPS13C-209ENST00000560637 ADGRL1O94910 1474 aa7.47□□□□□ -1.21
VPS13C-209ENST00000560637 PPP6R1Q9UPN7 881 aa7.47□□□□□ -1.21
VPS13C-209ENST00000560637 FANCAO15360 1455 aa7.47□□□□□ -1.21
VPS13C-209ENST00000560637 HSPA5P11021 654 aaKnown RBP7.47□□□□□ -1.21
VPS13C-209ENST00000560637 HAP1P54257 671 aaPredicted RBP7.47□□□□□ -1.21
VPS13C-209ENST00000560637 CC2D1BQ5T0F9 858 aaKnown RBP7.46□□□□□ -1.21
VPS13C-209ENST00000560637 MIER1Q8N108 512 aa7.46□□□□□ -1.21
VPS13C-209ENST00000560637 SLC26A8Q96RN1 970 aa7.46□□□□□ -1.21
VPS13C-209ENST00000560637 EHBP1L1Q8N3D4 1523 aa7.46□□□□□ -1.22
VPS13C-209ENST00000560637 EID1Q9Y6B2 187 aa7.46□□□□□ -1.22
VPS13C-209ENST00000560637 CFAP43Q8NDM7 1665 aa7.46□□□□□ -1.22
VPS13C-209ENST00000560637 CCDC144AA2RUR9 1427 aa7.45□□□□□ -1.22
VPS13C-209ENST00000560637 MAP3K4Q9Y6R4 1608 aa7.45□□□□□ -1.22
VPS13C-209ENST00000560637 PAK3O75914 559 aaPredicted RBP7.45□□□□□ -1.22
VPS13C-209ENST00000560637 DAPK1P53355 1430 aa7.44□□□□□ -1.22
VPS13C-209ENST00000560637 ROCK2O75116 1388 aaKnown RBP7.44□□□□□ -1.22
VPS13C-209ENST00000560637 GPATCH8Q9UKJ3 1502 aaKnown RBP7.44□□□□□ -1.22
VPS13C-209ENST00000560637 RAPGEF6Q8TEU7 1601 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms