RNA–Protein interactions for RNA: ENST00000559754.1

SPG11-218, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 5

Gene SPG11, Length 411 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-218ENST00000559754 POTEMA6NI47 508 aa10.63□□□□□ -0.71
SPG11-218ENST00000559754 TMC2Q8TDI7 906 aa10.63□□□□□ -0.71
SPG11-218ENST00000559754 RIMBP2O15034 1052 aa10.62□□□□□ -0.71
SPG11-218ENST00000559754 POTEGQ6S5H5 508 aa10.62□□□□□ -0.71
SPG11-218ENST00000559754 ZNF710Q8N1W2 664 aa10.61□□□□□ -0.71
SPG11-218ENST00000559754 KIF3CO14782 793 aa10.6□□□□□ -0.71
SPG11-218ENST00000559754 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.6□□□□□ -0.71
SPG11-218ENST00000559754 C2orf72A6NCS6 295 aa10.59□□□□□ -0.71
SPG11-218ENST00000559754 HOXB3P14651 431 aaPredicted RBP10.59□□□□□ -0.71
SPG11-218ENST00000559754 ZSWIM6Q9HCJ5 1215 aa10.56□□□□□ -0.72
SPG11-218ENST00000559754 GPHNQ9NQX3 736 aaPredicted RBP10.54□□□□□ -0.72
SPG11-218ENST00000559754 PCDH10Q9P2E7 1040 aa10.53□□□□□ -0.72
SPG11-218ENST00000559754 SPRYD3Q8NCJ5 442 aa10.52□□□□□ -0.73
SPG11-218ENST00000559754 HOXB1P14653 301 aaPredicted RBP10.51□□□□□ -0.73
SPG11-218ENST00000559754 EMP3P54852 163 aa10.51□□□□□ -0.73
SPG11-218ENST00000559754 PDE4AP27815 886 aa10.5□□□□□ -0.73
SPG11-218ENST00000559754 FOXK1P85037 733 aa10.5□□□□□ -0.73
SPG11-218ENST00000559754 MARVELD3Q96A59 401 aa10.49□□□□□ -0.73
SPG11-218ENST00000559754 SLC34A2O95436 690 aa10.48□□□□□ -0.73
SPG11-218ENST00000559754 CRISPLD2Q9H0B8 497 aa10.47□□□□□ -0.73
SPG11-218ENST00000559754 PLPP6Q8IY26 295 aa10.46□□□□□ -0.73
SPG11-218ENST00000559754 DSG2Q14126 1118 aa10.45□□□□□ -0.74
SPG11-218ENST00000559754 GPR153Q6NV75 609 aa10.45□□□□□ -0.74
SPG11-218ENST00000559754 PAXIP1Q6ZW49 1069 aaPredicted RBP10.44□□□□□ -0.74
SPG11-218ENST00000559754 CFAP44Q96MT7 982 aa10.44□□□□□ -0.74
SPG11-218ENST00000559754 ARSIQ5FYB1 569 aa10.43□□□□□ -0.74
SPG11-218ENST00000559754 NCKAP5LQ9HCH0 1330 aa10.42□□□□□ -0.74
SPG11-218ENST00000559754 FAM205CA6NFA0 338 aa10.42□□□□□ -0.74
SPG11-218ENST00000559754 PPP1R15BQ5SWA1 713 aa10.42□□□□□ -0.74
SPG11-218ENST00000559754 CDAN1Q8IWY9 1227 aa10.41□□□□□ -0.74
SPG11-218ENST00000559754 LARP6Q9BRS8 491 aaKnown RBP10.41□□□□□ -0.74
SPG11-218ENST00000559754 PCDHGA4Q9Y5G9 962 aa10.41□□□□□ -0.74
SPG11-218ENST00000559754 ERBB3P21860 1342 aa10.4□□□□□ -0.74
SPG11-218ENST00000559754 DDX27Q96GQ7 796 aaKnown RBP10.4□□□□□ -0.74
SPG11-218ENST00000559754 HS3ST6Q96QI5 342 aa10.4□□□□□ -0.74
SPG11-218ENST00000559754 TBC1D12O60347 775 aa10.39□□□□□ -0.75
SPG11-218ENST00000559754 MFSD10Q14728 455 aa10.38□□□□□ -0.75
SPG11-218ENST00000559754 PTCD2Q8WV60 388 aaKnown RBP10.38□□□□□ -0.75
SPG11-218ENST00000559754 CADPS2Q86UW7 1296 aa10.37□□□□□ -0.75
SPG11-218ENST00000559754 KHSRPQ92945 711 aaKnown RBP eCLIP10.35□□□□□ -0.75
SPG11-218ENST00000559754 ZNF316A6NFI3 1004 aaPredicted RBP10.34□□□□□ -0.75
SPG11-218ENST00000559754 NUDT7P0C024 238 aa10.34□□□□□ -0.75
SPG11-218ENST00000559754 VARS2Q5ST30 1063 aaKnown RBP10.34□□□□□ -0.75
SPG11-218ENST00000559754 POTEB3A0JP26 581 aa10.32□□□□□ -0.76
SPG11-218ENST00000559754 POTEBQ6S5H4 581 aa10.32□□□□□ -0.76
SPG11-218ENST00000559754 OXER1Q8TDS5 423 aa10.32□□□□□ -0.76
SPG11-218ENST00000559754 PSDA5PKW4 1024 aaPredicted RBP10.3□□□□□ -0.76
SPG11-218ENST00000559754 UPF1Q92900 1129 aaKnown RBP eCLIP10.3□□□□□ -0.76
SPG11-218ENST00000559754 ZNF687Q8N1G0 1237 aa10.28□□□□□ -0.76
SPG11-218ENST00000559754 LHX6Q9UPM6 363 aa10.28□□□□□ -0.76
SPG11-218ENST00000559754 KDM4FA0A1W2PPD8 638 aa10.26□□□□□ -0.77
SPG11-218ENST00000559754 MAP3K9P80192 1104 aa10.25□□□□□ -0.77
SPG11-218ENST00000559754 WDR70Q9NW82 654 aa10.25□□□□□ -0.77
SPG11-218ENST00000559754 CAMK2BQ13554 666 aa10.24□□□□□ -0.77
SPG11-218ENST00000559754 KRTAP3-3Q9BYR6 98 aa10.23□□□□□ -0.77
SPG11-218ENST00000559754 KRTAP3-2Q9BYR7 98 aa10.23□□□□□ -0.77
SPG11-218ENST00000559754 PLSCR2Q9NRY7 297 aa10.23□□□□□ -0.77
SPG11-218ENST00000559754 EMILIN3Q9NT22 766 aa10.22□□□□□ -0.77
SPG11-218ENST00000559754 PPP4R3BQ5MIZ7 849 aa10.21□□□□□ -0.77
SPG11-218ENST00000559754 EVI5O60447 810 aa10.2□□□□□ -0.78
SPG11-218ENST00000559754 PBX2P40425 430 aa10.2□□□□□ -0.78
SPG11-218ENST00000559754 PLCB2Q00722 1185 aa10.2□□□□□ -0.78
SPG11-218ENST00000559754 ANO8Q9HCE9 1232 aaPredicted RBP10.19□□□□□ -0.78
SPG11-218ENST00000559754 TSHZ2Q9NRE2 1034 aa10.19□□□□□ -0.78
SPG11-218ENST00000559754 E2F4Q16254 413 aa10.17□□□□□ -0.78
SPG11-218ENST00000559754 SPNS2Q8IVW8 549 aa10.15□□□□□ -0.78
SPG11-218ENST00000559754 ZNF454Q8N9F8 522 aa10.15□□□□□ -0.78
SPG11-218ENST00000559754 DPYSL4O14531 572 aa10.14□□□□□ -0.79
SPG11-218ENST00000559754 JPH4Q96JJ6 628 aa10.14□□□□□ -0.79
SPG11-218ENST00000559754 KCNH8Q96L42 1107 aa10.14□□□□□ -0.79
SPG11-218ENST00000559754 ARHGAP33O14559 1287 aa10.13□□□□□ -0.79
SPG11-218ENST00000559754 FOSBP53539 338 aa10.13□□□□□ -0.79
SPG11-218ENST00000559754 LSM11P83369 360 aaKnown RBP eCLIP10.11□□□□□ -0.79
SPG11-218ENST00000559754 ARIH1Q9Y4X5 557 aaPredicted RBP10.11□□□□□ -0.79
SPG11-218ENST00000559754 SPDYE16A6NNV3 312 aaPredicted RBP10.09□□□□□ -0.79
SPG11-218ENST00000559754 PTGER2P43116 358 aa10.09□□□□□ -0.79
SPG11-218ENST00000559754 ANKRD13DQ6ZTN6 518 aa10.09□□□□□ -0.79
SPG11-218ENST00000559754 AXIN2Q9Y2T1 843 aa10.09□□□□□ -0.79
SPG11-218ENST00000559754 PHF14O94880 888 aa10.08□□□□□ -0.8
SPG11-218ENST00000559754 POTEEQ6S8J3 1075 aa10.08□□□□□ -0.8
SPG11-218ENST00000559754 ZDHHC16Q969W1 377 aa10.08□□□□□ -0.8
SPG11-218ENST00000559754 PDIA6Q15084 440 aa10.07□□□□□ -0.8
SPG11-218ENST00000559754 BCL2L12Q9HB09 334 aa10.07□□□□□ -0.8
SPG11-218ENST00000559754 MMRN1Q13201 1228 aa10.06□□□□□ -0.8
SPG11-218ENST00000559754 PTPREP23469 700 aa10.05□□□□□ -0.8
SPG11-218ENST00000559754 FBXW7Q969H0 707 aa10.05□□□□□ -0.8
SPG11-218ENST00000559754 EPAS1Q99814 870 aa10.05□□□□□ -0.8
SPG11-218ENST00000559754 PCDHGA10Q9Y5H3 936 aa10.05□□□□□ -0.8
SPG11-218ENST00000559754 PSEN2P49810 448 aa10.04□□□□□ -0.8
SPG11-218ENST00000559754 HAP1P54257 671 aaPredicted RBP10.04□□□□□ -0.8
SPG11-218ENST00000559754 TYW1BQ6NUM6 668 aa10.04□□□□□ -0.8
SPG11-218ENST00000559754 KCNK17Q96T54 332 aa10.04□□□□□ -0.8
SPG11-218ENST00000559754 TK2O00142 265 aa10.03□□□□□ -0.8
SPG11-218ENST00000559754 P3H3Q8IVL6 736 aa10.02□□□□□ -0.81
SPG11-218ENST00000559754 ADAM33Q9BZ11 813 aa10.02□□□□□ -0.81
SPG11-218ENST00000559754 ADGRD1Q6QNK2 874 aa10.01□□□□□ -0.81
SPG11-218ENST00000559754 ARHGEF1Q92888 912 aaKnown RBP10.01□□□□□ -0.81
SPG11-218ENST00000559754 DMRTA1Q5VZB9 504 aa10□□□□□ -0.81
SPG11-218ENST00000559754 DDX12PQ92771 950 aa10□□□□□ -0.81
SPG11-218ENST00000559754 SLC4A5Q9BY07 1137 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms